Wall clock time and date at job start Mon Mar 30 2020 01:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99950 * 2 1 4 4 O 1.20823 * 119.99955 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99632 * 180.02562 * 3 2 1 6 6 H 1.09008 * 109.30763 * 59.75327 * 5 3 2 7 7 C 1.52920 * 109.37459 * 179.52613 * 5 3 2 8 8 N 1.47151 * 108.49532 * 170.61505 * 7 5 3 9 9 C 1.46901 * 111.00104 * 165.33709 * 8 7 5 10 10 C 1.50696 * 109.46992 * 189.05058 * 9 8 7 11 11 H 1.07998 * 120.00548 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99481 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00168 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47246 * 119.99972 * 14 12 10 17 17 H 1.48505 * 109.46901 * 240.00202 * 14 12 10 18 18 C 1.46633 * 110.26049 * 288.76319 * 8 7 5 19 19 C 1.50617 * 110.49821 * 52.56032 * 18 8 7 20 20 C 1.38732 * 118.42929 * 162.49296 * 19 18 8 21 21 C 1.38014 * 120.37657 * 179.54567 * 20 19 18 22 22 C 1.38264 * 119.86879 * 0.03178 * 21 20 19 23 23 C 1.38029 * 119.82809 * 0.09258 * 22 21 20 24 24 C 1.37836 * 121.84530 * 342.25452 * 19 18 8 25 25 H 1.09002 * 109.47032 * 300.00030 * 1 2 3 26 26 H 1.09011 * 109.47198 * 59.99673 * 1 2 3 27 27 H 1.08997 * 109.47727 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.65156 * 50.89716 * 7 5 3 29 29 H 1.08997 * 109.78145 * 290.40081 * 7 5 3 30 30 H 1.09006 * 109.46893 * 309.05156 * 9 8 7 31 31 H 1.08994 * 109.47337 * 69.04574 * 9 8 7 32 32 H 0.97004 * 119.99455 * 179.97438 * 13 12 10 33 33 H 1.09003 * 109.27168 * 292.29125 * 18 8 7 34 34 H 1.09004 * 109.26897 * 172.82133 * 18 8 7 35 35 H 1.08003 * 119.81250 * 359.57111 * 20 19 18 36 36 H 1.07996 * 120.06561 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.08609 * 180.11097 * 22 21 20 38 38 H 1.07997 * 119.82855 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9530 0.7763 -0.8896 7 6 3.9975 2.7419 -0.0124 8 7 5.4501 2.8034 0.2147 9 6 5.9805 4.1304 -0.1257 10 6 7.4867 4.0922 -0.0951 11 1 7.9988 3.1740 0.1520 12 6 8.2111 5.2294 -0.3837 13 7 7.5875 6.3474 -0.6851 14 14 10.0780 5.1820 -0.3466 15 1 10.5314 3.8157 0.0183 16 1 10.6091 5.5388 -1.6867 17 1 10.5779 6.1538 0.6589 18 6 5.7621 2.4534 1.6041 19 6 5.1304 1.1362 1.9707 20 6 5.6020 0.4665 3.0905 21 6 5.0461 -0.7388 3.4685 22 6 4.0135 -1.2834 2.7275 23 6 3.5449 -0.6197 1.6117 24 6 4.1037 0.5908 1.2302 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.4797 3.2826 0.7799 29 1 3.7585 3.1889 -0.9773 30 1 5.6442 4.4109 -1.1239 31 1 5.6208 4.8620 0.5977 32 1 8.0971 7.1475 -0.8878 33 1 5.3810 3.2317 2.2654 34 1 6.8431 2.3793 1.7223 35 1 6.4086 0.8910 3.6699 36 1 5.4168 -1.2556 4.3413 37 1 3.5747 -2.2255 3.0211 38 1 2.7387 -1.0452 1.0327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599670679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:03 Heat of formation + Delta-G solvation = -71.820411 kcal Electronic energy + Delta-G solvation = -21314.506880 eV Core-core repulsion = 18121.085650 eV Total energy + Delta-G solvation = -3193.421230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10828 -40.54619 -38.33649 -37.51076 -35.14845 -34.10692 -32.47349 -30.46464 -29.20137 -28.45692 -26.33915 -25.04206 -23.60371 -22.99645 -22.07872 -20.39244 -18.88826 -18.55023 -17.98036 -17.74331 -16.92953 -16.83809 -16.54077 -16.09371 -15.61818 -14.95322 -14.84974 -14.70689 -14.41795 -14.27623 -13.88468 -13.77491 -13.44287 -13.21576 -13.11990 -12.95820 -12.68852 -12.57927 -12.43971 -12.11840 -11.93017 -11.73177 -11.64307 -11.51029 -11.25235 -10.64310 -9.72134 -9.57017 -9.15304 -8.21974 -6.32702 0.37020 0.48643 1.04611 1.42123 1.42837 1.56248 1.60557 2.40325 2.84845 3.10018 3.17107 3.41232 3.58411 3.87411 3.98918 4.12053 4.19120 4.30611 4.34479 4.36241 4.47270 4.54201 4.62390 4.69458 4.72134 4.74092 4.85782 5.06758 5.09767 5.16927 5.18309 5.27412 5.54309 5.62636 5.65331 5.67142 5.96418 6.11455 6.22449 6.43378 6.61626 6.82315 7.37257 8.89907 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.005178 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.138110 B = 5406.524555 C = 6525.681552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.348 6.348 3 C 0.483 3.517 4 O -0.533 6.533 5 C -0.027 4.027 6 H 0.136 0.864 7 C 0.070 3.930 8 N -0.531 5.531 9 C 0.207 3.793 10 C -0.523 4.523 11 H 0.067 0.933 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.972 3.028 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.101 3.899 19 C -0.079 4.079 20 C -0.129 4.129 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.093 4.093 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.140 0.860 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.010 0.990 31 H -0.036 1.036 32 H 0.265 0.735 33 H 0.026 0.974 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.597 -18.225 6.156 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.264 6.264 3 C 0.326 3.674 4 O -0.422 6.422 5 C -0.047 4.047 6 H 0.154 0.846 7 C -0.059 4.059 8 N -0.254 5.254 9 C 0.081 3.919 10 C -0.561 4.561 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.185 1.185 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.027 4.027 19 C -0.080 4.080 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.136 4.136 24 C -0.094 4.094 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.028 0.972 31 H -0.018 1.018 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.174 0.826 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.575 -18.099 5.791 21.747 hybrid contribution 0.264 1.675 0.182 1.705 sum -10.311 -16.424 5.973 20.292 Atomic orbital electron populations 1.23634 0.74695 1.06097 1.02476 1.86499 1.25018 1.31430 1.83409 1.23465 0.91255 0.81637 0.71026 1.90659 1.67512 1.37517 1.46536 1.19878 0.86748 0.97448 1.00585 0.84622 1.21840 0.89076 0.93768 1.01216 1.62276 1.10374 1.30809 1.21987 1.19454 0.95250 0.83234 0.93963 1.21436 0.91367 0.96479 1.46814 0.91509 1.25935 1.04220 0.94775 0.94617 1.70107 1.37699 1.01558 1.48173 0.85287 0.78687 0.78571 0.77796 1.18466 1.20425 1.20413 1.20844 1.00738 0.92849 0.88250 1.19771 0.96180 0.95974 0.96055 1.21254 1.00974 0.96364 0.96132 1.21462 0.96142 0.94771 1.00425 1.21460 0.96939 1.00849 0.94711 1.21721 1.00464 0.93424 0.98022 1.19131 0.97777 0.96759 0.95705 0.92231 0.91994 0.84183 0.95717 0.90807 0.97233 1.01805 0.92615 0.95589 0.89625 0.84963 0.82872 0.82610 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.83 7.67 -51.46 -0.39 -8.23 16 3 C 0.48 14.51 7.06 71.24 0.50 15.01 16 4 O -0.53 -19.22 15.57 21.97 0.34 -18.87 16 5 C -0.03 -0.89 2.93 -12.31 -0.04 -0.92 16 6 H 0.14 4.02 8.14 -2.38 -0.02 4.00 16 7 C 0.07 2.82 4.29 86.23 0.37 3.19 16 8 N -0.53 -24.19 4.68 -905.73 -4.23 -28.43 16 9 C 0.21 11.38 4.71 85.56 0.40 11.78 16 10 C -0.52 -29.80 8.56 25.60 0.22 -29.58 16 11 H 0.07 3.71 7.09 -2.91 -0.02 3.69 16 12 C 0.00 0.15 5.46 84.66 0.46 0.61 16 13 N -0.94 -56.80 13.29 21.45 0.28 -56.52 16 14 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 C 0.10 4.15 4.96 85.58 0.42 4.57 16 19 C -0.08 -2.67 5.79 -19.87 -0.12 -2.79 16 20 C -0.13 -3.50 9.65 22.33 0.22 -3.28 16 21 C -0.11 -2.30 10.05 22.22 0.22 -2.08 16 22 C -0.12 -2.41 10.05 22.23 0.22 -2.19 16 23 C -0.12 -2.87 9.00 22.32 0.20 -2.67 16 24 C -0.09 -2.89 5.44 -19.85 -0.11 -2.99 16 25 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 26 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.02 1.06 7.70 -2.39 -0.02 1.04 16 29 H 0.07 3.05 7.86 -2.39 -0.02 3.03 16 30 H 0.01 0.56 7.91 -2.38 -0.02 0.55 16 31 H -0.04 -2.14 8.07 -2.39 -0.02 -2.16 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 33 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 34 H 0.09 3.65 6.94 -2.38 -0.02 3.63 16 35 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.15 3.17 5.33 -2.91 -0.02 3.15 16 Total: -1.00 -70.06 314.58 3.26 -66.80 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.06 Total: 8.75 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 4.18 Total: -9.77 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.95 Total: -84.94 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.06 3.26 -66.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599670679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.024 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds