Wall clock time and date at job start Mon Mar 30 2020 02:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47036 * 274.23966 * 3 2 1 5 5 H 1.48498 * 109.47187 * 34.24208 * 3 2 1 6 6 H 1.48502 * 109.47107 * 154.24333 * 3 2 1 7 7 C 1.37874 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00328 * 352.93681 * 7 2 1 9 9 C 1.50706 * 119.99889 * 173.22216 * 7 2 1 10 10 C 1.52995 * 115.54995 * 301.46847 * 9 7 2 11 11 N 1.46503 * 109.47018 * 294.78896 * 10 9 7 12 12 C 1.34779 * 119.99933 * 184.71375 * 11 10 9 13 13 O 1.21598 * 119.99906 * 4.59443 * 12 11 10 14 14 C 1.47432 * 119.99995 * 184.60216 * 12 11 10 15 15 C 1.41289 * 126.41151 * 4.81854 * 14 12 11 16 16 N 1.30454 * 108.02051 * 179.85574 * 15 14 12 17 17 N 1.39942 * 108.89375 * 0.41213 * 16 15 14 18 18 C 1.46503 * 125.75115 * 179.73734 * 17 16 15 19 19 C 1.53000 * 117.49787 * 163.61967 * 18 17 16 20 20 C 1.52999 * 59.99989 * 252.51334 * 19 18 17 21 21 C 1.34259 * 108.49100 * 359.73292 * 17 16 15 22 22 C 1.53004 * 117.49680 * 155.79956 * 9 7 2 23 23 C 1.52997 * 117.49928 * 87.14102 * 9 7 2 24 24 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46931 * 54.78591 * 10 9 7 26 26 H 1.09001 * 109.47168 * 174.78824 * 10 9 7 27 27 H 0.97001 * 120.00296 * 4.70789 * 11 10 9 28 28 H 1.07995 * 125.99014 * 0.02562 * 15 14 12 29 29 H 1.08995 * 115.54770 * 309.32699 * 18 17 16 30 30 H 1.09002 * 117.49865 * 359.97438 * 19 18 17 31 31 H 1.09001 * 117.49700 * 145.01749 * 19 18 17 32 32 H 1.09006 * 117.49241 * 252.51396 * 20 19 18 33 33 H 1.08991 * 117.52041 * 107.48253 * 20 19 18 34 34 H 1.08005 * 126.28807 * 180.02562 * 21 17 16 35 35 H 1.08994 * 117.49892 * 359.97438 * 22 9 7 36 36 H 1.08999 * 117.49786 * 145.02320 * 22 9 7 37 37 H 1.09006 * 117.49779 * 214.98091 * 23 9 7 38 38 H 1.09007 * 117.49913 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4070 2.0982 -1.3963 5 1 1.4943 2.6251 0.7878 6 1 3.5887 1.4160 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1259 0.1141 9 6 3.5036 -1.1985 -0.1546 10 6 4.0375 -0.5501 -1.4333 11 7 3.6023 -1.3299 -2.5947 12 6 4.0343 -1.0002 -3.8281 13 8 4.8498 -0.1092 -3.9686 14 6 3.5180 -1.7197 -5.0068 15 6 2.5050 -2.7046 -5.0109 16 7 2.3297 -3.0981 -6.2422 17 7 3.2157 -2.4009 -7.0713 18 6 3.3348 -2.5601 -8.5227 19 6 4.0686 -1.4626 -9.2960 20 6 2.5480 -1.5904 -9.4067 21 6 3.9380 -1.5615 -6.3122 22 6 4.2670 -2.4038 0.3982 23 6 4.3447 -1.0537 1.1152 24 1 -0.4850 0.8401 -0.0004 25 1 3.6524 0.4664 -1.5133 26 1 5.1267 -0.5245 -1.4003 27 1 3.0034 -2.0836 -2.4760 28 1 1.9679 -3.0662 -4.1465 29 1 3.4463 -3.5854 -8.8756 30 1 4.4624 -0.6219 -8.7248 31 1 4.6633 -1.7657 -10.1577 32 1 2.1423 -1.9776 -10.3414 33 1 1.9415 -0.8342 -8.9084 34 1 4.7061 -0.8862 -6.6593 35 1 3.6849 -3.1932 0.8736 36 1 5.1498 -2.7345 -0.1489 37 1 5.2786 -0.4966 1.0395 38 1 3.8137 -0.9547 2.0621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599872524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:58 Heat of formation + Delta-G solvation = 96.265627 kcal Electronic energy + Delta-G solvation = -20706.559063 eV Core-core repulsion = 17552.719342 eV Total energy + Delta-G solvation = -3153.839721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.36930 -38.82340 -37.41792 -36.84723 -33.35518 -32.18272 -31.22670 -30.24872 -26.95530 -25.31596 -23.68507 -23.07429 -22.05056 -21.50414 -20.25563 -19.66887 -19.19199 -17.92764 -16.64233 -16.11505 -15.72975 -15.26522 -15.05586 -14.81145 -14.33436 -13.87989 -13.83264 -13.28360 -12.96730 -12.91780 -12.69332 -12.24157 -12.08366 -12.01981 -11.39042 -11.27555 -11.04150 -10.79937 -10.65242 -10.53977 -10.22442 -9.63394 -9.51331 -9.36380 -9.16310 -8.81961 -8.64044 -8.46654 -8.14396 -6.16866 -4.18218 1.59405 2.14006 2.34155 3.13136 3.30474 3.40473 3.46005 3.85469 3.89779 4.10316 4.25376 4.40013 4.44954 4.68758 4.83672 4.92931 5.10492 5.24657 5.27099 5.37591 5.42522 5.51979 5.56268 5.70535 5.91109 5.98491 6.17287 6.27020 6.46991 6.49138 6.57368 6.72924 6.81836 6.95118 7.09937 7.21939 7.58167 7.68729 8.27798 8.42917 8.84466 8.87085 9.47222 10.94088 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.004413 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.125770 B = 6343.496629 C = 6538.570476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.155 3.845 11 N -0.696 5.696 12 C 0.586 3.414 13 O -0.569 6.569 14 C -0.280 4.280 15 C 0.086 3.914 16 N -0.295 5.295 17 N -0.342 5.342 18 C 0.081 3.919 19 C -0.171 4.171 20 C -0.175 4.175 21 C 0.119 3.881 22 C -0.180 4.180 23 C -0.189 4.189 24 H 0.266 0.734 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.406 0.594 28 H 0.196 0.804 29 H 0.142 0.858 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.184 0.816 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.491 -4.568 -15.965 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.527 4.527 8 H 0.097 0.903 9 C -0.017 4.017 10 C 0.031 3.969 11 N -0.345 5.345 12 C 0.373 3.627 13 O -0.450 6.450 14 C -0.295 4.295 15 C -0.101 4.101 16 N -0.113 5.113 17 N -0.120 5.120 18 C -0.022 4.022 19 C -0.209 4.209 20 C -0.213 4.213 21 C -0.031 4.031 22 C -0.218 4.218 23 C -0.228 4.228 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.242 0.758 28 H 0.213 0.787 29 H 0.159 0.841 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.200 0.800 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.211 -4.624 -16.934 18.977 hybrid contribution 0.440 1.197 0.683 1.447 sum 7.652 -3.426 -16.251 18.286 Atomic orbital electron populations 1.69891 1.06368 1.27277 1.49167 1.24899 0.94486 0.99024 0.93517 0.87034 0.81342 0.83679 0.78328 1.20391 1.21984 1.17550 1.20254 0.86723 0.94675 1.51013 0.90315 1.19598 0.94746 0.97812 0.89559 1.21084 0.96886 0.94371 0.84524 1.45615 1.49354 1.34034 1.05458 1.17229 0.80826 0.82290 0.82356 1.90708 1.34947 1.32827 1.86516 1.20373 1.07057 1.08048 0.94006 1.24270 0.95917 0.94438 0.95512 1.77205 1.13192 1.19446 1.01502 1.47809 1.28037 1.30208 1.05961 1.21756 1.07748 0.97997 0.74675 1.23469 0.95822 0.99566 1.02044 1.23488 0.94380 1.01923 1.01470 1.22809 0.96043 0.93882 0.90391 1.22780 1.01782 0.91870 1.05321 1.23062 1.01218 0.99817 0.98653 0.92457 0.92659 0.93039 0.75836 0.78716 0.84098 0.87471 0.86482 0.86955 0.87773 0.79950 0.89644 0.90851 0.91163 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.33 5.46 -17.82 -0.10 2.23 16 3 Si 0.87 21.53 24.68 -169.99 -4.20 17.33 16 4 H -0.28 -7.05 6.96 56.52 0.39 -6.66 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.25 -5.90 6.13 56.52 0.35 -5.55 16 7 C -0.49 -12.80 9.19 -34.44 -0.32 -13.11 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 9 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 10 C 0.15 3.38 5.08 -4.04 -0.02 3.36 16 11 N -0.70 -13.83 5.46 -61.38 -0.34 -14.16 16 12 C 0.59 11.51 7.81 -12.52 -0.10 11.41 16 13 O -0.57 -12.71 16.89 5.28 0.09 -12.62 16 14 C -0.28 -4.61 6.12 -105.07 -0.64 -5.25 16 15 C 0.09 1.31 11.50 -16.98 -0.20 1.12 16 16 N -0.29 -4.44 12.50 30.86 0.39 -4.06 16 17 N -0.34 -4.39 3.91 -54.31 -0.21 -4.61 16 18 C 0.08 0.71 7.12 -67.93 -0.48 0.22 16 19 C -0.17 -1.05 9.97 -26.73 -0.27 -1.32 16 20 C -0.17 -1.25 10.46 -26.73 -0.28 -1.53 16 21 C 0.12 1.65 10.63 -16.56 -0.18 1.47 16 22 C -0.18 -3.47 9.96 -26.69 -0.27 -3.73 16 23 C -0.19 -3.86 8.71 -26.70 -0.23 -4.10 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.06 1.34 4.23 -51.93 -0.22 1.12 16 26 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 27 H 0.41 7.48 7.34 -40.82 -0.30 7.18 16 28 H 0.20 2.59 7.55 -52.49 -0.40 2.20 16 29 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 0.70 6.98 -51.93 -0.36 0.34 16 31 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.18 2.11 7.20 -52.48 -0.38 1.73 16 35 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.85 8.14 -51.92 -0.42 1.42 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -32.78 323.31 -6.91 -39.69 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.08 Total: 8.65 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -3.21 Total: -9.70 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.61 Total: -48.23 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.20 Total: 17.33 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.78 -6.91 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599872524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.953 kcal (2) G-P(sol) polarization free energy of solvation -32.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds