Wall clock time and date at job start Mon Mar 30 2020 02:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47036 * 274.23966 * 3 2 1 5 5 H 1.48498 * 109.47187 * 34.24208 * 3 2 1 6 6 H 1.48502 * 109.47107 * 154.24333 * 3 2 1 7 7 C 1.37874 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00328 * 352.93681 * 7 2 1 9 9 C 1.50706 * 119.99889 * 173.22216 * 7 2 1 10 10 C 1.52995 * 115.54995 * 301.46847 * 9 7 2 11 11 N 1.46503 * 109.47018 * 294.78896 * 10 9 7 12 12 C 1.34779 * 119.99933 * 184.71375 * 11 10 9 13 13 O 1.21598 * 119.99906 * 4.59443 * 12 11 10 14 14 C 1.47432 * 119.99995 * 184.60216 * 12 11 10 15 15 C 1.41289 * 126.41151 * 4.81854 * 14 12 11 16 16 N 1.30454 * 108.02051 * 179.85574 * 15 14 12 17 17 N 1.39942 * 108.89375 * 0.41213 * 16 15 14 18 18 C 1.46503 * 125.75115 * 179.73734 * 17 16 15 19 19 C 1.53000 * 117.49787 * 163.61967 * 18 17 16 20 20 C 1.52999 * 59.99989 * 252.51334 * 19 18 17 21 21 C 1.34259 * 108.49100 * 359.73292 * 17 16 15 22 22 C 1.53004 * 117.49680 * 155.79956 * 9 7 2 23 23 C 1.52997 * 117.49928 * 87.14102 * 9 7 2 24 24 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46931 * 54.78591 * 10 9 7 26 26 H 1.09001 * 109.47168 * 174.78824 * 10 9 7 27 27 H 0.97001 * 120.00296 * 4.70789 * 11 10 9 28 28 H 1.07995 * 125.99014 * 0.02562 * 15 14 12 29 29 H 1.08995 * 115.54770 * 309.32699 * 18 17 16 30 30 H 1.09002 * 117.49865 * 359.97438 * 19 18 17 31 31 H 1.09001 * 117.49700 * 145.01749 * 19 18 17 32 32 H 1.09006 * 117.49241 * 252.51396 * 20 19 18 33 33 H 1.08991 * 117.52041 * 107.48253 * 20 19 18 34 34 H 1.08005 * 126.28807 * 180.02562 * 21 17 16 35 35 H 1.08994 * 117.49892 * 359.97438 * 22 9 7 36 36 H 1.08999 * 117.49786 * 145.02320 * 22 9 7 37 37 H 1.09006 * 117.49779 * 214.98091 * 23 9 7 38 38 H 1.09007 * 117.49913 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4070 2.0982 -1.3963 5 1 1.4943 2.6251 0.7878 6 1 3.5887 1.4160 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1259 0.1141 9 6 3.5036 -1.1985 -0.1546 10 6 4.0375 -0.5501 -1.4333 11 7 3.6023 -1.3299 -2.5947 12 6 4.0343 -1.0002 -3.8281 13 8 4.8498 -0.1092 -3.9686 14 6 3.5180 -1.7197 -5.0068 15 6 2.5050 -2.7046 -5.0109 16 7 2.3297 -3.0981 -6.2422 17 7 3.2157 -2.4009 -7.0713 18 6 3.3348 -2.5601 -8.5227 19 6 4.0686 -1.4626 -9.2960 20 6 2.5480 -1.5904 -9.4067 21 6 3.9380 -1.5615 -6.3122 22 6 4.2670 -2.4038 0.3982 23 6 4.3447 -1.0537 1.1152 24 1 -0.4850 0.8401 -0.0004 25 1 3.6524 0.4664 -1.5133 26 1 5.1267 -0.5245 -1.4003 27 1 3.0034 -2.0836 -2.4760 28 1 1.9679 -3.0662 -4.1465 29 1 3.4463 -3.5854 -8.8756 30 1 4.4624 -0.6219 -8.7248 31 1 4.6633 -1.7657 -10.1577 32 1 2.1423 -1.9776 -10.3414 33 1 1.9415 -0.8342 -8.9084 34 1 4.7061 -0.8862 -6.6593 35 1 3.6849 -3.1932 0.8736 36 1 5.1498 -2.7345 -0.1489 37 1 5.2786 -0.4966 1.0395 38 1 3.8137 -0.9547 2.0621 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599872524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:58 Heat of formation + Delta-G solvation = 73.916319 kcal Electronic energy + Delta-G solvation = -20707.528202 eV Core-core repulsion = 17552.719342 eV Total energy + Delta-G solvation = -3154.808860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47521 -40.34662 -38.61717 -38.05016 -34.95616 -34.26934 -32.26966 -31.46207 -28.63938 -27.17284 -24.75109 -23.77649 -23.26537 -22.96655 -21.26169 -21.17558 -20.78107 -19.22638 -18.31840 -17.18454 -17.01094 -16.87293 -16.62975 -16.07897 -15.60119 -15.37560 -15.04472 -14.85652 -14.64815 -14.11097 -14.08512 -13.76948 -13.68155 -13.00034 -12.60881 -12.53088 -12.40130 -12.14756 -12.05662 -11.96865 -11.60099 -11.44824 -11.08919 -10.93096 -10.68862 -10.54488 -10.33519 -10.01019 -9.59416 -8.30590 -6.32290 0.45886 1.09326 1.22525 1.31837 1.38146 1.47910 2.32091 2.34841 2.46380 2.57781 3.00362 3.40174 3.45590 3.57456 3.73642 3.84568 3.90286 4.03654 4.11083 4.31736 4.39588 4.49525 4.54559 4.61392 4.65390 4.74350 4.87842 4.91079 4.94992 5.06598 5.08917 5.28370 5.33340 5.53052 5.61220 5.70560 5.85487 6.31850 6.44683 6.70124 6.79243 7.32946 7.35384 8.83805 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.004413 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.125770 B = 6343.496629 C = 6538.570476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.037 3.963 3 Si 0.916 3.084 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.228 1.228 7 C -0.475 4.475 8 H 0.048 0.952 9 C -0.042 4.042 10 C 0.160 3.840 11 N -0.698 5.698 12 C 0.587 3.413 13 O -0.600 6.600 14 C -0.311 4.311 15 C 0.083 3.917 16 N -0.314 5.314 17 N -0.331 5.331 18 C 0.048 3.952 19 C -0.148 4.148 20 C -0.173 4.173 21 C 0.133 3.867 22 C -0.155 4.155 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.411 0.589 28 H 0.204 0.796 29 H 0.158 0.842 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.206 0.794 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 -4.984 -17.556 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.162 4.162 3 Si 0.744 3.256 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.150 1.150 7 C -0.512 4.512 8 H 0.066 0.934 9 C -0.044 4.044 10 C 0.037 3.963 11 N -0.346 5.346 12 C 0.376 3.624 13 O -0.484 6.484 14 C -0.326 4.326 15 C -0.104 4.104 16 N -0.133 5.133 17 N -0.109 5.109 18 C -0.053 4.053 19 C -0.186 4.186 20 C -0.211 4.211 21 C -0.019 4.019 22 C -0.192 4.192 23 C -0.222 4.222 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.220 0.780 29 H 0.175 0.825 30 H 0.122 0.878 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.102 0.898 34 H 0.223 0.777 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.380 -5.078 -18.533 21.383 hybrid contribution -0.236 1.231 1.056 1.639 sum 9.144 -3.847 -17.477 20.097 Atomic orbital electron populations 1.70006 1.07886 1.27758 1.52047 1.25512 0.94882 1.01847 0.93970 0.86262 0.81404 0.80461 0.77502 1.21797 1.22378 1.15007 1.20394 0.89016 0.93047 1.48757 0.93394 1.19445 0.92649 1.01378 0.90878 1.20914 0.97385 0.93237 0.84807 1.45604 1.49573 1.34058 1.05395 1.17596 0.80120 0.81845 0.82845 1.90673 1.36477 1.34272 1.86956 1.20217 1.08884 1.09583 0.93956 1.24399 0.95743 0.94198 0.96039 1.77154 1.14177 1.20306 1.01639 1.48159 1.26509 1.28791 1.07396 1.22329 1.10561 0.99907 0.72477 1.23641 0.95303 0.97812 1.01846 1.23549 0.95232 1.00683 1.01603 1.23123 0.95694 0.93444 0.89683 1.22828 1.01593 0.91029 1.03712 1.23109 1.01246 1.00796 0.97040 0.92688 0.95178 0.91775 0.75293 0.77980 0.82457 0.87751 0.83383 0.84587 0.89756 0.77710 0.89515 0.88271 0.88952 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 2 C 0.04 2.06 5.46 84.65 0.46 2.53 16 3 Si 0.92 44.82 24.68 68.60 1.69 46.51 16 4 H -0.29 -14.74 6.96 99.48 0.69 -14.05 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.23 -10.09 6.13 99.48 0.61 -9.48 16 7 C -0.47 -25.03 9.19 25.60 0.24 -24.80 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 9 C -0.04 -1.82 0.85 -52.93 -0.04 -1.87 16 10 C 0.16 6.83 5.08 86.38 0.44 7.27 16 11 N -0.70 -27.51 5.46 -466.38 -2.55 -30.06 16 12 C 0.59 22.91 7.81 86.66 0.68 23.59 16 13 O -0.60 -26.58 16.89 -4.02 -0.07 -26.65 16 14 C -0.31 -10.12 6.12 -20.15 -0.12 -10.25 16 15 C 0.08 2.53 11.50 85.65 0.99 3.52 16 16 N -0.31 -9.25 12.50 -56.27 -0.70 -9.95 16 17 N -0.33 -8.03 3.91 -325.75 -1.27 -9.31 16 18 C 0.05 0.73 7.12 44.99 0.32 1.05 16 19 C -0.15 -1.32 9.97 30.59 0.31 -1.02 16 20 C -0.17 -2.05 10.46 30.59 0.32 -1.73 16 21 C 0.13 3.51 10.63 84.27 0.90 4.41 16 22 C -0.15 -5.53 9.96 30.62 0.30 -5.22 16 23 C -0.18 -7.00 8.71 30.62 0.27 -6.73 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.03 1.44 4.23 -2.39 -0.01 1.43 16 26 H 0.06 2.56 8.06 -2.39 -0.02 2.54 16 27 H 0.41 15.19 7.34 -92.71 -0.68 14.51 16 28 H 0.20 5.49 7.55 -2.91 -0.02 5.47 16 29 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.10 1.04 6.98 -2.39 -0.02 1.03 16 31 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.14 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.21 4.32 7.20 -2.91 -0.02 4.30 16 35 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 38 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -71.67 323.31 2.73 -68.94 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.29 Total: 26.24 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.04 Total: -9.26 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -4.22 Total: -105.78 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.69 Total: 46.51 kcal Total: -71.67 2.73 -68.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599872524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.855 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds