Wall clock time and date at job start Mon Mar 30 2020 01:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99643 * 2 1 4 4 H 1.09005 * 112.85251 * 341.19018 * 3 2 1 5 5 C 1.53779 * 113.69178 * 112.46285 * 3 2 1 6 6 C 1.53787 * 87.08188 * 139.99114 * 5 3 2 7 7 H 1.08997 * 113.68955 * 220.00861 * 6 5 3 8 8 N 1.46494 * 113.61295 * 89.11713 * 6 5 3 9 9 C 1.34782 * 119.99903 * 107.50843 * 8 6 5 10 10 O 1.21543 * 119.99717 * 359.97438 * 9 8 6 11 11 C 1.47892 * 119.99728 * 179.97438 * 9 8 6 12 12 C 1.39918 * 120.02615 * 359.97438 * 11 9 8 13 13 C 1.38320 * 120.35918 * 180.23425 * 12 11 9 14 14 C 1.37764 * 120.40963 * 359.48601 * 13 12 11 15 15 C 1.40750 * 120.03721 * 0.51090 * 14 13 12 16 16 C 1.41439 * 120.17451 * 179.76475 * 15 14 13 17 17 H 1.08000 * 120.00188 * 24.45025 * 16 15 14 18 18 C 1.39939 * 119.99780 * 204.44224 * 16 15 14 19 19 N 1.30826 * 119.99684 * 17.89565 * 18 16 15 20 20 Si 1.86802 * 120.00020 * 197.88633 * 18 16 15 21 21 H 1.48498 * 109.46813 * 90.00573 * 20 18 16 22 22 H 1.48493 * 109.47405 * 210.00355 * 20 18 16 23 23 H 1.48499 * 109.47230 * 330.01020 * 20 18 16 24 24 C 1.38987 * 120.02291 * 179.97438 * 11 9 8 25 25 C 1.53782 * 113.61302 * 209.99994 * 3 2 1 26 26 H 1.08998 * 109.46787 * 60.00634 * 1 2 3 27 27 H 1.08996 * 109.46632 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47055 * 299.99965 * 1 2 3 29 29 H 1.09001 * 113.61287 * 25.44271 * 5 3 2 30 30 H 1.09000 * 113.61542 * 254.53790 * 5 3 2 31 31 H 0.96998 * 120.00039 * 287.49915 * 8 6 5 32 32 H 1.07999 * 119.81725 * 359.95860 * 12 11 9 33 33 H 1.08003 * 119.79754 * 179.74737 * 13 12 11 34 34 H 1.07998 * 119.97804 * 180.23754 * 14 13 12 35 35 H 0.97005 * 119.99628 * 179.97438 * 19 18 16 36 36 H 1.08008 * 120.19955 * 0.04250 * 24 11 9 37 37 H 1.08997 * 113.61792 * 105.38708 * 25 3 2 38 38 H 1.08997 * 113.61585 * 334.48208 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3239 5 6 2.7530 1.6512 1.3013 6 6 3.8219 2.3201 0.4210 7 1 4.8424 2.1440 0.7612 8 7 3.5515 3.7322 0.1405 9 6 4.2911 4.6906 0.7331 10 8 5.1821 4.3832 1.5005 11 6 4.0184 6.1163 0.4495 12 6 2.9931 6.4707 -0.4343 13 6 2.7353 7.8017 -0.7082 14 6 3.4776 8.7940 -0.1063 15 6 4.5130 8.4568 0.7854 16 6 5.2801 9.4730 1.4011 17 1 4.8665 10.4633 1.5226 18 6 6.5751 9.1954 1.8531 19 7 7.2091 8.1391 1.4128 20 14 7.3985 10.3332 3.0848 21 1 7.0873 9.8782 4.4637 22 1 8.8684 10.3088 2.8754 23 1 6.8942 11.7169 2.8945 24 6 4.7803 7.1050 1.0606 25 6 3.3755 1.3720 -0.7045 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1168 0.7773 1.8418 30 1 2.2131 2.3505 1.9398 31 1 2.8403 3.9776 -0.4717 32 1 2.4028 5.7006 -0.9085 33 1 1.9444 8.0649 -1.3950 34 1 3.2678 9.8312 -0.3223 35 1 8.1069 7.9469 1.7258 36 1 5.5732 6.8360 1.7430 37 1 3.3382 1.8458 -1.6854 38 1 3.9095 0.4218 -0.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600777335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:14 Heat of formation + Delta-G solvation = -44.960170 kcal Electronic energy + Delta-G solvation = -20505.074389 eV Core-core repulsion = 17312.817907 eV Total energy + Delta-G solvation = -3192.256482 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11286 -38.59999 -37.05990 -36.13287 -33.79927 -32.51870 -29.99994 -29.45050 -27.05430 -25.79664 -25.38735 -24.28770 -22.51247 -20.99341 -19.78790 -19.38781 -17.84755 -16.96442 -16.20491 -15.72010 -15.51049 -15.29396 -15.05402 -14.65025 -14.17443 -13.94229 -13.28539 -13.22181 -12.79150 -12.55989 -12.54889 -12.45374 -12.34534 -11.67369 -11.33111 -11.20117 -11.11984 -11.00151 -10.74853 -10.57786 -10.46859 -10.03582 -9.71718 -9.61078 -9.23863 -9.06091 -8.69926 -7.66316 -7.55035 -6.82245 -4.43667 2.17284 2.79384 3.06807 3.10029 3.14147 3.55212 3.66331 3.80972 3.90506 4.45568 4.48705 4.60984 4.79450 4.89158 5.13558 5.19095 5.40278 5.48076 5.57483 5.58821 5.68024 5.76703 5.93577 5.96000 6.03240 6.13276 6.24440 6.69529 6.84231 6.96514 6.99000 7.07808 7.19038 7.35395 7.67110 7.72818 7.89927 8.05884 8.16431 8.48178 8.77940 8.80914 8.91439 10.12445 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.003795 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.198119 B = 7376.889017 C = 7986.420256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.060 3.940 4 H 0.086 0.914 5 C -0.168 4.168 6 C 0.126 3.874 7 H 0.108 0.892 8 N -0.721 5.721 9 C 0.567 3.433 10 O -0.543 6.543 11 C -0.128 4.128 12 C -0.220 4.220 13 C -0.097 4.097 14 C -0.212 4.212 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.092 4.092 25 C -0.143 4.143 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.134 0.866 37 H 0.078 0.922 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -10.618 -2.944 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.002 3.998 4 H 0.104 0.896 5 C -0.207 4.207 6 C 0.019 3.981 7 H 0.126 0.874 8 N -0.374 5.374 9 C 0.358 3.642 10 O -0.420 6.420 11 C -0.132 4.132 12 C -0.240 4.240 13 C -0.115 4.115 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.406 5.406 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.112 4.112 25 C -0.182 4.182 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.885 -11.120 -2.380 13.838 hybrid contribution -0.234 0.762 0.114 0.805 sum -8.119 -10.358 -2.266 13.354 Atomic orbital electron populations 1.22773 0.81399 1.02536 0.99999 1.87927 1.19495 1.27664 1.94631 1.23863 0.93838 0.84914 0.97147 0.89569 1.23985 0.98243 1.01107 0.97357 1.21484 1.00056 0.80862 0.95681 0.87406 1.45687 1.38091 1.04526 1.49106 1.18872 0.80228 0.86213 0.78897 1.90695 1.31763 1.83543 1.36021 1.19454 1.00201 0.90682 1.02817 1.20316 1.02248 0.95345 1.06057 1.20430 0.98758 0.92983 0.99355 1.21098 1.02494 0.97244 1.02384 1.17604 0.90931 0.92360 0.89483 1.19607 0.97860 0.97902 1.33467 0.90027 1.25976 0.97532 0.95720 0.95410 1.69791 1.12232 1.24348 1.34262 0.86259 0.78251 0.80912 0.81040 1.19121 1.20203 1.18574 1.21648 0.98710 0.91441 0.99381 1.23618 0.95530 1.00437 0.98573 0.94068 0.89863 0.94015 0.88571 0.90783 0.76605 0.89347 0.88911 0.88599 0.90390 0.84800 0.90376 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.32 10.72 -35.23 -0.38 -4.70 16 3 C 0.06 0.66 4.18 -25.92 -0.11 0.56 16 4 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 5 C -0.17 -2.09 7.71 -25.92 -0.20 -2.29 16 6 C 0.13 1.76 4.32 -67.12 -0.29 1.47 16 7 H 0.11 1.70 7.46 -51.93 -0.39 1.31 16 8 N -0.72 -11.73 5.21 -53.94 -0.28 -12.01 16 9 C 0.57 12.28 7.77 -12.31 -0.10 12.18 16 10 O -0.54 -13.54 15.93 5.33 0.08 -13.45 16 11 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 14 C -0.21 -5.00 9.78 -38.81 -0.38 -5.37 16 15 C 0.10 2.59 5.57 -106.87 -0.60 2.00 16 16 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 19 N -0.78 -20.64 10.95 55.55 0.61 -20.03 16 20 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.09 -2.43 8.24 -38.45 -0.32 -2.75 16 25 C -0.14 -1.59 7.66 -25.92 -0.20 -1.79 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.40 5.57 6.72 -40.82 -0.27 5.29 16 32 H 0.09 1.49 6.38 -52.49 -0.33 1.16 16 33 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 36 H 0.13 3.85 5.74 -52.48 -0.30 3.55 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -29.75 322.91 -8.10 -37.85 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.06 Total: 10.00 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.90 Total: -16.21 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.33 Total: -32.03 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.75 -8.10 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600777335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds