Wall clock time and date at job start Mon Mar 30 2020 01:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 113.99643 * 2 1 4 4 H 1.09005 * 112.85251 * 341.19018 * 3 2 1 5 5 C 1.53779 * 113.69178 * 112.46285 * 3 2 1 6 6 C 1.53787 * 87.08188 * 139.99114 * 5 3 2 7 7 H 1.08997 * 113.68955 * 220.00861 * 6 5 3 8 8 N 1.46494 * 113.61295 * 89.11713 * 6 5 3 9 9 C 1.34782 * 119.99903 * 107.50843 * 8 6 5 10 10 O 1.21543 * 119.99717 * 359.97438 * 9 8 6 11 11 C 1.47892 * 119.99728 * 179.97438 * 9 8 6 12 12 C 1.39918 * 120.02615 * 359.97438 * 11 9 8 13 13 C 1.38320 * 120.35918 * 180.23425 * 12 11 9 14 14 C 1.37764 * 120.40963 * 359.48601 * 13 12 11 15 15 C 1.40750 * 120.03721 * 0.51090 * 14 13 12 16 16 C 1.41439 * 120.17451 * 179.76475 * 15 14 13 17 17 H 1.08000 * 120.00188 * 24.45025 * 16 15 14 18 18 C 1.39939 * 119.99780 * 204.44224 * 16 15 14 19 19 N 1.30826 * 119.99684 * 17.89565 * 18 16 15 20 20 Si 1.86802 * 120.00020 * 197.88633 * 18 16 15 21 21 H 1.48498 * 109.46813 * 90.00573 * 20 18 16 22 22 H 1.48493 * 109.47405 * 210.00355 * 20 18 16 23 23 H 1.48499 * 109.47230 * 330.01020 * 20 18 16 24 24 C 1.38987 * 120.02291 * 179.97438 * 11 9 8 25 25 C 1.53782 * 113.61302 * 209.99994 * 3 2 1 26 26 H 1.08998 * 109.46787 * 60.00634 * 1 2 3 27 27 H 1.08996 * 109.46632 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47055 * 299.99965 * 1 2 3 29 29 H 1.09001 * 113.61287 * 25.44271 * 5 3 2 30 30 H 1.09000 * 113.61542 * 254.53790 * 5 3 2 31 31 H 0.96998 * 120.00039 * 287.49915 * 8 6 5 32 32 H 1.07999 * 119.81725 * 359.95860 * 12 11 9 33 33 H 1.08003 * 119.79754 * 179.74737 * 13 12 11 34 34 H 1.07998 * 119.97804 * 180.23754 * 14 13 12 35 35 H 0.97005 * 119.99628 * 179.97438 * 19 18 16 36 36 H 1.08008 * 120.19955 * 0.04250 * 24 11 9 37 37 H 1.08997 * 113.61792 * 105.38708 * 25 3 2 38 38 H 1.08997 * 113.61585 * 334.48208 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3239 5 6 2.7530 1.6512 1.3013 6 6 3.8219 2.3201 0.4210 7 1 4.8424 2.1440 0.7612 8 7 3.5515 3.7322 0.1405 9 6 4.2911 4.6906 0.7331 10 8 5.1821 4.3832 1.5005 11 6 4.0184 6.1163 0.4495 12 6 2.9931 6.4707 -0.4343 13 6 2.7353 7.8017 -0.7082 14 6 3.4776 8.7940 -0.1063 15 6 4.5130 8.4568 0.7854 16 6 5.2801 9.4730 1.4011 17 1 4.8665 10.4633 1.5226 18 6 6.5751 9.1954 1.8531 19 7 7.2091 8.1391 1.4128 20 14 7.3985 10.3332 3.0848 21 1 7.0873 9.8782 4.4637 22 1 8.8684 10.3088 2.8754 23 1 6.8942 11.7169 2.8945 24 6 4.7803 7.1050 1.0606 25 6 3.3755 1.3720 -0.7045 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 3.1168 0.7773 1.8418 30 1 2.2131 2.3505 1.9398 31 1 2.8403 3.9776 -0.4717 32 1 2.4028 5.7006 -0.9085 33 1 1.9444 8.0649 -1.3950 34 1 3.2678 9.8312 -0.3223 35 1 8.1069 7.9469 1.7258 36 1 5.5732 6.8360 1.7430 37 1 3.3382 1.8458 -1.6854 38 1 3.9095 0.4218 -0.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600777335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:14 Heat of formation + Delta-G solvation = -63.940966 kcal Electronic energy + Delta-G solvation = -20505.897458 eV Core-core repulsion = 17312.817907 eV Total energy + Delta-G solvation = -3193.079551 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40269 -39.99327 -38.72545 -37.23009 -35.63366 -34.00985 -31.76333 -31.26179 -27.81202 -27.21473 -26.74743 -25.50029 -24.00163 -22.79953 -21.39899 -20.57041 -19.56504 -18.08116 -17.76195 -17.00155 -16.78878 -16.58981 -16.33611 -16.11218 -15.69040 -15.47120 -15.06879 -14.54420 -14.27817 -14.08405 -13.68071 -13.47513 -13.42391 -13.30749 -12.95847 -12.82008 -12.53638 -12.19626 -12.13294 -11.93350 -11.90291 -11.53900 -11.46020 -11.08723 -10.81701 -10.44744 -10.12603 -9.48090 -9.39021 -8.67213 -6.38624 0.36577 1.00585 1.36188 1.47843 1.50554 2.07485 2.15622 2.18930 2.77402 2.88318 3.46271 3.55784 3.69565 3.85612 3.95736 4.01104 4.40372 4.45787 4.54502 4.58984 4.59308 4.75725 4.78653 4.87370 4.90248 4.96058 4.97392 5.03301 5.08760 5.19073 5.31115 5.50413 5.55871 5.86071 5.92073 6.05160 6.28440 6.28924 6.50218 6.67448 6.87544 6.94283 7.29480 8.29539 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.003795 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.198119 B = 7376.889017 C = 7986.420256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.070 3.930 4 H 0.103 0.897 5 C -0.166 4.166 6 C 0.109 3.891 7 H 0.084 0.916 8 N -0.695 5.695 9 C 0.564 3.436 10 O -0.588 6.588 11 C -0.139 4.139 12 C -0.197 4.197 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.498 4.498 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.267 1.267 22 H -0.270 1.270 23 H -0.250 1.250 24 C -0.131 4.131 25 C -0.128 4.128 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.416 -11.350 -4.580 16.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C 0.012 3.988 4 H 0.121 0.879 5 C -0.205 4.205 6 C 0.004 3.996 7 H 0.102 0.898 8 N -0.348 5.348 9 C 0.354 3.646 10 O -0.469 6.469 11 C -0.142 4.142 12 C -0.217 4.217 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.527 4.527 17 H 0.102 0.898 18 C -0.186 4.186 19 N -0.450 5.450 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.194 1.194 23 H -0.173 1.173 24 C -0.152 4.152 25 C -0.166 4.166 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.063 0.937 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.252 0.748 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.465 -11.879 -4.059 16.343 hybrid contribution 0.355 0.835 0.513 1.042 sum -10.110 -11.044 -3.546 15.386 Atomic orbital electron populations 1.22984 0.79793 1.03838 1.00784 1.87904 1.21295 1.27598 1.94600 1.23782 0.94042 0.85500 0.95446 0.87897 1.23967 0.97749 1.00766 0.98030 1.21668 0.99565 0.79920 0.98476 0.89772 1.45409 1.36945 1.04694 1.47731 1.18757 0.80347 0.86563 0.78945 1.90673 1.33929 1.84053 1.38225 1.19763 1.00423 0.91201 1.02858 1.20853 1.00450 0.96790 1.03564 1.20932 0.98952 0.92377 0.99017 1.21419 1.01763 0.98855 1.01665 1.17946 0.92355 0.92442 0.90783 1.19876 0.98878 0.98261 1.35671 0.89783 1.26859 0.97872 0.97159 0.96706 1.69892 1.12652 1.26479 1.36002 0.85188 0.77338 0.79098 0.78031 1.19154 1.19421 1.17342 1.21450 0.99873 0.92752 1.01128 1.23541 0.95369 0.99710 0.98008 0.92737 0.88477 0.93725 0.88252 0.91696 0.74820 0.84414 0.84235 0.87355 0.90309 0.88399 0.88865 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.40 -7.80 10.72 -148.98 -1.60 -9.40 16 3 C 0.07 1.33 4.18 31.12 0.13 1.46 16 4 H 0.10 1.61 7.87 -2.38 -0.02 1.59 16 5 C -0.17 -3.89 7.71 31.12 0.24 -3.65 16 6 C 0.11 2.94 4.32 45.52 0.20 3.14 16 7 H 0.08 2.70 7.46 -2.39 -0.02 2.68 16 8 N -0.70 -21.40 5.21 -442.86 -2.31 -23.71 16 9 C 0.56 24.61 7.77 86.80 0.67 25.28 16 10 O -0.59 -30.74 15.93 -3.85 -0.06 -30.80 16 11 C -0.14 -6.52 5.87 -20.13 -0.12 -6.64 16 12 C -0.20 -7.50 9.55 22.70 0.22 -7.29 16 13 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 14 C -0.22 -10.04 9.78 22.77 0.22 -9.81 16 15 C 0.07 3.63 5.57 -21.32 -0.12 3.51 16 16 C -0.50 -27.13 9.05 23.47 0.21 -26.91 16 17 H 0.08 4.32 7.91 -2.91 -0.02 4.30 16 18 C 0.03 1.52 5.14 85.25 0.44 1.96 16 19 N -0.82 -46.25 10.95 21.83 0.24 -46.01 16 20 Si 0.98 39.82 29.60 68.60 2.03 41.85 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 24 C -0.13 -7.30 8.24 23.00 0.19 -7.11 16 25 C -0.13 -2.48 7.66 31.12 0.24 -2.24 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.41 9.97 6.72 -92.71 -0.62 9.35 16 32 H 0.14 3.84 6.38 -2.91 -0.02 3.82 16 33 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.29 14.81 8.30 -92.70 -0.77 14.04 16 36 H 0.10 6.09 5.74 -2.91 -0.02 6.07 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.48 322.91 2.73 -66.75 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.45 Total: 31.52 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.97 Total: -30.21 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -2.07 Total: -69.72 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.66 Total: -40.20 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -69.48 2.73 -66.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600777335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.813 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds