Wall clock time and date at job start Mon Mar 30 2020 02:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48506 * 109.47302 * 0.02562 * 3 2 1 5 5 H 1.48509 * 109.47079 * 119.99956 * 3 2 1 6 6 H 1.48501 * 109.47360 * 239.99960 * 3 2 1 7 7 C 1.38972 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99703 * 181.28935 * 7 2 1 9 9 N 1.36976 * 120.00370 * 1.29796 * 7 2 1 10 10 C 1.34776 * 120.00595 * 118.25415 * 9 7 2 11 11 O 1.21629 * 120.00316 * 185.73764 * 10 9 7 12 12 C 1.47352 * 119.99842 * 5.74776 * 10 9 7 13 13 C 1.41323 * 126.41915 * 352.51844 * 12 10 9 14 14 N 1.30446 * 108.02758 * 179.85973 * 13 12 10 15 15 N 1.39936 * 108.91191 * 0.40762 * 14 13 12 16 16 C 1.46497 * 125.74883 * 179.73649 * 15 14 13 17 17 C 1.53003 * 109.47118 * 305.00001 * 16 15 14 18 18 C 1.53003 * 117.49935 * 243.74563 * 17 16 15 19 19 C 1.53008 * 117.49545 * 175.08954 * 17 16 15 20 20 C 1.34286 * 108.49644 * 359.73846 * 15 14 13 21 21 C 1.46503 * 119.99721 * 298.25833 * 9 7 2 22 22 C 1.53000 * 117.49974 * 4.73932 * 21 9 7 23 23 C 1.53000 * 60.00229 * 252.50935 * 22 21 9 24 24 H 0.97003 * 120.00594 * 355.01263 * 1 2 3 25 25 H 1.08000 * 125.98600 * 0.02795 * 13 12 10 26 26 H 1.08999 * 109.47411 * 65.00588 * 16 15 14 27 27 H 1.09006 * 109.47028 * 185.00178 * 16 15 14 28 28 H 1.09000 * 115.54792 * 29.42528 * 17 16 15 29 29 H 1.08993 * 117.50164 * 0.02562 * 18 17 16 30 30 H 1.09007 * 117.49248 * 145.02362 * 18 17 16 31 31 H 1.09004 * 117.49136 * 214.98472 * 19 17 16 32 32 H 1.08995 * 117.49888 * 359.97256 * 19 17 16 33 33 H 1.08004 * 126.29740 * 179.97438 * 20 15 14 34 34 H 1.09001 * 115.55337 * 150.44597 * 21 9 7 35 35 H 1.09002 * 117.49903 * 0.02562 * 22 21 9 36 36 H 1.09005 * 117.50138 * 145.02158 * 22 21 9 37 37 H 1.08996 * 117.49625 * 252.51332 * 23 22 21 38 38 H 1.08996 * 117.51869 * 107.47264 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 1.2830 2.7465 0.0006 5 1 3.1018 1.6964 1.2126 6 1 3.1018 1.6964 -1.2125 7 6 2.0089 -1.2036 0.0005 8 1 3.0887 -1.2036 0.0216 9 7 1.3244 -2.3897 -0.0258 10 6 1.4861 -3.2384 -1.0602 11 8 0.8023 -4.2414 -1.1367 12 6 2.4916 -2.9514 -2.0984 13 6 3.2506 -1.7662 -2.2264 14 7 4.0299 -1.8960 -3.2644 15 7 3.8039 -3.1479 -3.8475 16 6 4.4784 -3.6721 -5.0376 17 6 4.3111 -2.6853 -6.1949 18 6 3.5244 -3.1586 -7.4188 19 6 5.0444 -2.9974 -7.5010 20 6 2.8645 -3.7876 -3.1323 21 6 0.4162 -2.7357 1.0705 22 6 0.1903 -1.6848 2.1592 23 6 1.0274 -2.9297 2.4597 24 1 -0.4851 0.8368 0.0730 25 1 3.1970 -0.9050 -1.5769 26 1 5.5390 -3.8061 -4.8248 27 1 4.0388 -4.6312 -5.3116 28 1 4.2155 -1.6377 -5.9093 29 1 3.1257 -4.1728 -7.3995 30 1 2.9114 -2.4222 -7.9387 31 1 5.4308 -2.1550 -8.0748 32 1 5.6464 -3.9054 -7.5356 33 1 2.4724 -4.7744 -3.3295 34 1 -0.4283 -3.3694 0.7992 35 1 0.7170 -0.7357 2.0596 36 1 -0.8030 -1.6267 2.6043 37 1 0.5847 -3.6906 3.1024 38 1 2.1051 -2.8002 2.5578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:34 Heat of formation + Delta-G solvation = 113.391720 kcal Electronic energy + Delta-G solvation = -21184.318935 eV Core-core repulsion = 18031.221857 eV Total energy + Delta-G solvation = -3153.097078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60253 -38.36344 -37.48954 -35.83373 -33.32493 -32.27452 -31.17569 -29.41712 -26.84661 -25.18543 -22.57633 -22.49035 -21.47491 -21.14033 -20.02410 -19.83969 -19.05564 -17.48223 -16.35170 -15.67578 -15.25416 -15.17546 -14.68372 -14.39912 -13.97317 -13.60972 -13.49633 -12.94294 -12.82357 -12.56026 -12.03266 -11.95845 -11.72411 -11.67888 -11.37389 -11.05494 -10.72193 -10.60526 -10.45642 -10.34538 -10.25848 -10.09512 -9.54954 -9.18384 -8.82782 -8.73732 -8.47396 -7.86407 -7.01824 -6.27187 -4.30191 2.28785 2.87070 3.12981 3.17721 3.19857 3.24225 3.63586 4.05770 4.37534 4.61043 4.68707 4.77992 4.79639 4.89744 5.01359 5.27003 5.31249 5.39168 5.42476 5.46471 5.69330 5.88691 5.92621 6.07470 6.12750 6.24806 6.29396 6.30364 6.43149 6.58706 6.69004 6.98331 7.17524 7.36809 7.44080 7.48046 7.49593 8.23333 8.31563 8.40178 9.04254 9.57685 10.03060 10.69252 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.005469 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.900104 B = 5118.593995 C = 6038.463864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.086 0.914 9 N -0.415 5.415 10 C 0.570 3.430 11 O -0.608 6.608 12 C -0.244 4.244 13 C 0.093 3.907 14 N -0.327 5.327 15 N -0.375 5.375 16 C 0.169 3.831 17 C -0.165 4.165 18 C -0.179 4.179 19 C -0.173 4.173 20 C 0.092 3.908 21 C 0.109 3.891 22 C -0.140 4.140 23 C -0.221 4.221 24 H 0.270 0.730 25 H 0.218 0.782 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.205 -3.419 -8.032 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.151 4.151 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.482 4.482 8 H 0.103 0.897 9 N -0.132 5.132 10 C 0.361 3.639 11 O -0.495 6.495 12 C -0.259 4.259 13 C -0.093 4.093 14 N -0.147 5.147 15 N -0.155 5.155 16 C 0.047 3.953 17 C -0.184 4.184 18 C -0.216 4.216 19 C -0.210 4.210 20 C -0.058 4.058 21 C 0.004 3.996 22 C -0.178 4.178 23 C -0.260 4.260 24 H 0.081 0.919 25 H 0.234 0.766 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.192 0.808 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.637 -3.258 -8.956 12.213 hybrid contribution -0.349 0.595 0.544 0.879 sum 7.288 -2.662 -8.412 11.444 Atomic orbital electron populations 1.69951 1.05988 1.27902 1.43726 1.25666 0.95350 0.99426 0.94651 0.86496 0.79756 0.81906 0.79668 1.20617 1.19438 1.18920 1.19105 0.91006 0.82349 1.55712 0.89687 1.42368 1.38945 1.16598 1.15315 1.17494 0.82354 0.83376 0.80704 1.90587 1.49695 1.30611 1.78568 1.20316 1.07005 0.96700 1.01865 1.25666 0.90745 0.99509 0.93365 1.77128 1.26150 0.98338 1.13088 1.48316 1.31153 1.13509 1.22532 1.21139 0.97767 0.95303 0.81100 1.22606 1.05623 1.01430 0.88740 1.23096 0.94173 1.02673 1.01628 1.22963 0.94878 1.03425 0.99774 1.22774 0.91692 0.98685 0.92603 1.21180 0.95010 1.00797 0.82612 1.22916 0.98906 0.94842 1.01128 1.23344 0.99638 1.01552 1.01439 0.91949 0.76607 0.89705 0.88991 0.86291 0.88602 0.88672 0.88533 0.88603 0.80806 0.88058 0.87121 0.90994 0.90639 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.75 11.25 55.50 0.62 -21.12 16 2 C 0.06 1.42 3.82 -17.46 -0.07 1.35 16 3 Si 0.90 18.65 29.04 -169.99 -4.94 13.71 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.35 -8.65 5.33 -14.98 -0.08 -8.73 16 8 H 0.09 2.02 6.20 -52.49 -0.33 1.69 16 9 N -0.42 -10.58 2.68 -108.95 -0.29 -10.87 16 10 C 0.57 14.68 7.62 -12.55 -0.10 14.59 16 11 O -0.61 -16.71 16.65 5.25 0.09 -16.63 16 12 C -0.24 -5.52 6.03 -105.07 -0.63 -6.16 16 13 C 0.09 2.02 10.33 -16.97 -0.18 1.85 16 14 N -0.33 -6.51 12.14 30.87 0.37 -6.14 16 15 N -0.38 -6.40 3.65 -60.78 -0.22 -6.62 16 16 C 0.17 2.03 6.77 -4.04 -0.03 2.00 16 17 C -0.17 -1.92 5.92 -90.61 -0.54 -2.46 16 18 C -0.18 -1.75 10.18 -26.69 -0.27 -2.02 16 19 C -0.17 -1.51 10.26 -26.69 -0.27 -1.78 16 20 C 0.09 1.73 11.26 -16.53 -0.19 1.54 16 21 C 0.11 2.64 5.71 -67.93 -0.39 2.25 16 22 C -0.14 -3.09 8.40 -26.73 -0.22 -3.32 16 23 C -0.22 -4.59 10.33 -26.73 -0.28 -4.86 16 24 H 0.27 6.64 8.32 -40.82 -0.34 6.31 16 25 H 0.22 4.81 4.22 -52.49 -0.22 4.59 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.09 0.87 7.80 -51.93 -0.40 0.47 16 28 H 0.12 1.69 7.90 -51.93 -0.41 1.28 16 29 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.17 2.81 8.06 -52.48 -0.42 2.38 16 34 H 0.10 2.54 7.70 -51.93 -0.40 2.14 16 35 H 0.11 2.63 5.44 -51.93 -0.28 2.34 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 319.36 15.07 4.81 4.81 Total: -1.00 -29.87 319.36 -7.76 -37.63 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -4.98 Total: 10.97 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -3.24 Total: -5.75 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.49 Total: -44.75 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.09 Total: -16.63 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.94 Total: 13.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.87 -7.76 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.024 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds