Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48499 * 109.47062 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47328 * 119.99763 * 3 2 1 6 6 H 1.48501 * 109.47093 * 239.99731 * 3 2 1 7 7 C 1.39108 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00242 * 186.64561 * 7 2 1 9 9 N 1.36753 * 119.99483 * 6.64598 * 7 2 1 10 10 C 1.34769 * 120.00295 * 45.01738 * 9 7 2 11 11 O 1.21668 * 119.99815 * 5.38496 * 10 9 7 12 12 C 1.47220 * 120.00101 * 185.38888 * 10 9 7 13 13 N 1.31964 * 125.93557 * 4.77453 * 12 10 9 14 14 C 1.33375 * 109.28217 * 179.90608 * 13 12 10 15 15 C 1.34851 * 108.19998 * 359.97438 * 14 13 12 16 16 N 1.36105 * 125.93667 * 184.46538 * 12 10 9 17 17 C 1.46435 * 128.39091 * 0.80278 * 16 12 10 18 18 C 1.53283 * 108.78518 * 162.36721 * 17 16 12 19 19 C 1.53132 * 109.64402 * 50.37487 * 18 17 16 20 20 C 1.50755 * 128.46370 * 180.11401 * 15 14 13 21 21 C 1.46503 * 119.99554 * 225.01320 * 9 7 2 22 22 C 1.52995 * 117.49881 * 2.17612 * 21 9 7 23 23 C 1.52998 * 117.49800 * 293.51553 * 21 9 7 24 24 H 0.96998 * 120.00073 * 355.00289 * 1 2 3 25 25 H 1.08002 * 125.90103 * 179.97438 * 14 13 12 26 26 H 1.08999 * 109.72914 * 42.47251 * 17 16 12 27 27 H 1.09004 * 109.39037 * 282.06121 * 17 16 12 28 28 H 1.09002 * 109.44327 * 290.32149 * 18 17 16 29 29 H 1.09003 * 109.44481 * 170.42632 * 18 17 16 30 30 H 1.09000 * 109.50611 * 170.40399 * 19 18 17 31 31 H 1.09000 * 109.50525 * 50.28991 * 19 18 17 32 32 H 1.09000 * 109.73467 * 283.86704 * 20 15 14 33 33 H 1.08992 * 109.73683 * 44.56793 * 20 15 14 34 34 H 1.09003 * 115.54591 * 147.84698 * 21 9 7 35 35 H 1.09002 * 117.50493 * 0.02562 * 22 21 9 36 36 H 1.09006 * 117.49700 * 145.02285 * 22 21 9 37 37 H 1.09006 * 117.49438 * 214.98219 * 23 21 9 38 38 H 1.08994 * 117.50208 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 1.2823 2.7464 -0.0006 5 1 3.1010 1.6964 1.2125 6 1 3.1011 1.6963 -1.2125 7 6 2.0089 -1.2047 0.0005 8 1 3.0834 -1.2078 0.1088 9 7 1.3319 -2.3850 -0.1360 10 6 0.3690 -2.5054 -1.0712 11 8 0.1686 -1.5993 -1.8581 12 6 -0.4404 -3.7332 -1.1406 13 7 -0.3847 -4.7462 -0.2968 14 6 -1.2609 -5.6796 -0.6708 15 6 -1.8897 -5.2459 -1.7821 16 7 -1.3803 -4.0181 -2.0829 17 6 -1.7922 -3.2074 -3.2307 18 6 -2.5344 -4.1045 -4.2276 19 6 -3.6226 -4.8961 -3.4968 20 6 -2.9640 -5.9377 -2.5821 21 6 1.6536 -3.5188 0.7343 22 6 2.7206 -3.3035 1.8095 23 6 3.0347 -4.1587 0.5794 24 1 -0.4850 0.8368 0.0732 25 1 -1.4366 -6.6203 -0.1701 26 1 -0.9138 -2.7759 -3.7106 27 1 -2.4548 -2.4108 -2.8920 28 1 -1.8292 -4.7967 -4.6876 29 1 -2.9922 -3.4869 -5.0004 30 1 -4.2570 -5.4007 -4.2254 31 1 -4.2268 -4.2156 -2.8969 32 1 -2.5208 -6.7295 -3.1861 33 1 -3.7094 -6.3608 -1.9089 34 1 0.8188 -4.1759 0.9781 35 1 3.1830 -2.3183 1.8697 36 1 2.5880 -3.8194 2.7605 37 1 3.1085 -5.2369 0.7217 38 1 3.7038 -3.7366 -0.1703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 70.953594 kcal Electronic energy + Delta-G solvation = -22037.208154 eV Core-core repulsion = 18882.270820 eV Total energy + Delta-G solvation = -3154.937333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.79863 -38.22718 -36.37853 -35.84135 -32.95544 -32.33648 -31.01622 -30.08517 -27.74262 -25.22179 -23.95403 -22.54641 -21.56692 -21.42214 -20.53727 -19.71676 -18.52513 -16.96854 -15.98107 -15.59277 -15.43013 -14.66365 -14.29158 -14.12762 -13.93458 -13.84444 -13.71633 -13.34786 -12.92893 -12.82455 -12.67388 -11.81067 -11.64296 -11.07999 -11.06209 -10.98753 -10.94726 -10.84844 -10.76807 -10.55491 -10.25689 -9.86920 -9.74614 -9.06927 -8.81335 -8.72983 -8.21099 -7.72401 -6.96882 -6.11286 -3.90585 2.27804 3.17613 3.29159 3.34403 3.36280 3.40167 4.25312 4.61442 4.65797 4.71840 4.75638 4.90918 5.00393 5.03525 5.32530 5.39864 5.44447 5.50323 5.61825 5.69188 5.74965 5.85969 5.91226 5.98578 6.02986 6.07571 6.15075 6.17726 6.35436 6.45892 6.67270 6.86650 7.04813 7.11355 7.40859 7.57538 7.73373 8.23873 8.53097 9.03060 9.16166 9.60092 10.27286 10.95561 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.006804 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.516298 B = 4113.949767 C = 5168.201297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.059 3.941 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.331 4.331 8 H 0.082 0.918 9 N -0.401 5.401 10 C 0.550 3.450 11 O -0.532 6.532 12 C 0.205 3.795 13 N -0.469 5.469 14 C -0.030 4.030 15 C -0.038 4.038 16 N -0.420 5.420 17 C 0.111 3.889 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.040 4.040 21 C 0.068 3.932 22 C -0.184 4.184 23 C -0.206 4.206 24 H 0.265 0.735 25 H 0.165 0.835 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 -10.267 -4.640 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.151 4.151 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.458 4.458 8 H 0.100 0.900 9 N -0.119 5.119 10 C 0.336 3.664 11 O -0.410 6.410 12 C -0.057 4.057 13 N -0.190 5.190 14 C -0.181 4.181 15 C -0.156 4.156 16 N -0.101 5.101 17 C -0.011 4.011 18 C -0.172 4.172 19 C -0.163 4.163 20 C -0.078 4.078 21 C -0.038 4.038 22 C -0.222 4.222 23 C -0.245 4.245 24 H 0.075 0.925 25 H 0.182 0.818 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.174 0.826 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.187 -9.524 -4.586 11.775 hybrid contribution -0.145 0.830 -0.485 0.973 sum -5.332 -8.693 -5.071 11.390 Atomic orbital electron populations 1.69834 1.06370 1.27512 1.42372 1.25391 0.95107 0.99470 0.95135 0.86157 0.79095 0.81497 0.78633 1.21080 1.20073 1.19942 1.18953 0.91294 0.82072 1.53524 0.90021 1.42292 1.32794 1.09971 1.26878 1.16177 0.83774 0.82999 0.83439 1.90624 1.69372 1.39464 1.41495 1.23673 0.94937 0.98315 0.88752 1.70374 1.21894 1.01339 1.25420 1.21911 0.98838 1.00591 0.96807 1.21157 1.03769 0.89028 1.01627 1.45078 1.28643 1.14695 1.21721 1.21969 1.01290 0.93014 0.84814 1.21935 0.98231 0.99137 0.97890 1.21658 0.97687 0.98161 0.98788 1.20144 0.94305 0.96691 0.96656 1.22822 0.93009 0.92704 0.95263 1.23096 1.05131 1.01420 0.92506 1.23190 1.02435 0.97704 1.01169 0.92473 0.81753 0.88084 0.89615 0.91080 0.89771 0.90929 0.91397 0.90479 0.89877 0.82610 0.88053 0.89926 0.89916 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.68 11.14 55.50 0.62 -24.06 16 2 C 0.06 1.68 4.75 -17.44 -0.08 1.59 16 3 Si 0.92 21.71 29.56 -169.99 -5.03 16.68 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.33 -9.26 7.94 -15.03 -0.12 -9.37 16 8 H 0.08 2.19 7.19 -52.49 -0.38 1.82 16 9 N -0.40 -10.80 2.85 -109.02 -0.31 -11.11 16 10 C 0.55 15.06 6.75 -12.61 -0.09 14.98 16 11 O -0.53 -15.74 13.04 5.22 0.07 -15.68 16 12 C 0.21 4.83 7.58 -154.83 -1.17 3.65 16 13 N -0.47 -10.11 7.61 -11.48 -0.09 -10.19 16 14 C -0.03 -0.53 11.82 -18.08 -0.21 -0.75 16 15 C -0.04 -0.63 6.58 -81.78 -0.54 -1.17 16 16 N -0.42 -8.25 3.16 -109.96 -0.35 -8.60 16 17 C 0.11 1.88 6.06 -3.93 -0.02 1.86 16 18 C -0.13 -1.59 5.93 -26.52 -0.16 -1.74 16 19 C -0.13 -1.32 5.96 -26.42 -0.16 -1.48 16 20 C -0.04 -0.45 6.31 -27.61 -0.17 -0.63 16 21 C 0.07 1.56 5.62 -67.93 -0.38 1.18 16 22 C -0.18 -3.71 9.80 -26.70 -0.26 -3.97 16 23 C -0.21 -4.08 10.37 -26.69 -0.28 -4.36 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.10 1.87 7.41 -51.93 -0.38 1.49 16 27 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.16 3.60 5.06 -51.93 -0.26 3.33 16 35 H 0.10 2.16 6.71 -51.93 -0.35 1.82 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 308.26 15.07 4.65 4.65 Total: -1.00 -33.50 308.26 -9.24 -42.74 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.16 Total: 5.80 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -3.65 Total: -0.21 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.13 Total: -53.97 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.50 -9.24 -42.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.692 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds