Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31332 * 1 3 3 Si 1.86796 * 120.00023 * 2 1 4 4 H 1.48499 * 109.47062 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47328 * 119.99763 * 3 2 1 6 6 H 1.48501 * 109.47093 * 239.99731 * 3 2 1 7 7 C 1.39108 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00242 * 186.64561 * 7 2 1 9 9 N 1.36753 * 119.99483 * 6.64598 * 7 2 1 10 10 C 1.34769 * 120.00295 * 45.01738 * 9 7 2 11 11 O 1.21668 * 119.99815 * 5.38496 * 10 9 7 12 12 C 1.47220 * 120.00101 * 185.38888 * 10 9 7 13 13 N 1.31964 * 125.93557 * 4.77453 * 12 10 9 14 14 C 1.33375 * 109.28217 * 179.90608 * 13 12 10 15 15 C 1.34851 * 108.19998 * 359.97438 * 14 13 12 16 16 N 1.36105 * 125.93667 * 184.46538 * 12 10 9 17 17 C 1.46435 * 128.39091 * 0.80278 * 16 12 10 18 18 C 1.53283 * 108.78518 * 162.36721 * 17 16 12 19 19 C 1.53132 * 109.64402 * 50.37487 * 18 17 16 20 20 C 1.50755 * 128.46370 * 180.11401 * 15 14 13 21 21 C 1.46503 * 119.99554 * 225.01320 * 9 7 2 22 22 C 1.52995 * 117.49881 * 2.17612 * 21 9 7 23 23 C 1.52998 * 117.49800 * 293.51553 * 21 9 7 24 24 H 0.96998 * 120.00073 * 355.00289 * 1 2 3 25 25 H 1.08002 * 125.90103 * 179.97438 * 14 13 12 26 26 H 1.08999 * 109.72914 * 42.47251 * 17 16 12 27 27 H 1.09004 * 109.39037 * 282.06121 * 17 16 12 28 28 H 1.09002 * 109.44327 * 290.32149 * 18 17 16 29 29 H 1.09003 * 109.44481 * 170.42632 * 18 17 16 30 30 H 1.09000 * 109.50611 * 170.40399 * 19 18 17 31 31 H 1.09000 * 109.50525 * 50.28991 * 19 18 17 32 32 H 1.09000 * 109.73467 * 283.86704 * 20 15 14 33 33 H 1.08992 * 109.73683 * 44.56793 * 20 15 14 34 34 H 1.09003 * 115.54591 * 147.84698 * 21 9 7 35 35 H 1.09002 * 117.50493 * 0.02562 * 22 21 9 36 36 H 1.09006 * 117.49700 * 145.02285 * 22 21 9 37 37 H 1.09006 * 117.49438 * 214.98219 * 23 21 9 38 38 H 1.08994 * 117.50208 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 1.2823 2.7464 -0.0006 5 1 3.1010 1.6964 1.2125 6 1 3.1011 1.6963 -1.2125 7 6 2.0089 -1.2047 0.0005 8 1 3.0834 -1.2078 0.1088 9 7 1.3319 -2.3850 -0.1360 10 6 0.3690 -2.5054 -1.0712 11 8 0.1686 -1.5993 -1.8581 12 6 -0.4404 -3.7332 -1.1406 13 7 -0.3847 -4.7462 -0.2968 14 6 -1.2609 -5.6796 -0.6708 15 6 -1.8897 -5.2459 -1.7821 16 7 -1.3803 -4.0181 -2.0829 17 6 -1.7922 -3.2074 -3.2307 18 6 -2.5344 -4.1045 -4.2276 19 6 -3.6226 -4.8961 -3.4968 20 6 -2.9640 -5.9377 -2.5821 21 6 1.6536 -3.5188 0.7343 22 6 2.7206 -3.3035 1.8095 23 6 3.0347 -4.1587 0.5794 24 1 -0.4850 0.8368 0.0732 25 1 -1.4366 -6.6203 -0.1701 26 1 -0.9138 -2.7759 -3.7106 27 1 -2.4548 -2.4108 -2.8920 28 1 -1.8292 -4.7967 -4.6876 29 1 -2.9922 -3.4869 -5.0004 30 1 -4.2570 -5.4007 -4.2254 31 1 -4.2268 -4.2156 -2.8969 32 1 -2.5208 -6.7295 -3.1861 33 1 -3.7094 -6.3608 -1.9089 34 1 0.8188 -4.1759 0.9781 35 1 3.1830 -2.3183 1.8697 36 1 2.5880 -3.8194 2.7605 37 1 3.1085 -5.2369 0.7217 38 1 3.7038 -3.7366 -0.1703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601015680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 50.634989 kcal Electronic energy + Delta-G solvation = -22038.089235 eV Core-core repulsion = 18882.270820 eV Total energy + Delta-G solvation = -3155.818414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.27486 -40.12504 -37.77896 -37.49000 -34.88836 -33.70795 -32.94619 -31.49156 -29.22708 -27.07986 -25.22608 -24.19552 -23.06715 -22.86418 -22.23758 -21.42788 -19.82889 -18.76868 -17.85308 -17.12318 -16.99819 -16.61775 -15.87163 -15.58121 -15.37711 -14.99860 -14.94516 -14.73100 -14.66091 -14.45347 -14.18168 -13.66736 -13.05950 -12.88543 -12.85747 -12.70353 -12.23418 -12.13687 -12.00574 -11.90624 -11.83749 -11.60236 -11.48275 -10.81268 -10.58336 -10.48098 -10.15375 -9.19455 -8.96661 -8.22352 -6.07623 0.69303 1.36552 1.44149 1.48775 1.73734 1.89161 2.31701 2.80011 3.06548 3.11962 3.44973 3.56905 3.66592 3.75322 3.81167 3.93846 4.22014 4.31209 4.36792 4.42327 4.44527 4.58939 4.61686 4.72567 4.84961 4.87637 4.90927 5.00365 5.07337 5.10990 5.29474 5.35819 5.40006 5.47424 5.58342 5.93107 6.12023 6.19179 6.88980 6.97277 7.20843 7.56858 8.24996 8.84756 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.006804 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.516298 B = 4113.949767 C = 5168.201297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.006 3.994 3 Si 0.987 3.013 4 H -0.284 1.284 5 H -0.254 1.254 6 H -0.275 1.275 7 C -0.348 4.348 8 H 0.084 0.916 9 N -0.418 5.418 10 C 0.540 3.460 11 O -0.576 6.576 12 C 0.143 3.857 13 N -0.472 5.472 14 C -0.049 4.049 15 C -0.014 4.014 16 N -0.421 5.421 17 C 0.106 3.894 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.039 4.039 21 C 0.034 3.966 22 C -0.171 4.171 23 C -0.183 4.183 24 H 0.261 0.739 25 H 0.205 0.795 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -12.933 -5.004 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.210 1.210 5 H -0.179 1.179 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.102 0.898 9 N -0.137 5.137 10 C 0.327 3.673 11 O -0.457 6.457 12 C -0.116 4.116 13 N -0.194 5.194 14 C -0.200 4.200 15 C -0.132 4.132 16 N -0.102 5.102 17 C -0.016 4.016 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.077 4.077 21 C -0.071 4.071 22 C -0.209 4.209 23 C -0.222 4.222 24 H 0.070 0.930 25 H 0.222 0.778 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.173 0.827 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.060 -12.201 -4.924 14.486 hybrid contribution 0.075 1.473 -0.409 1.530 sum -5.985 -10.728 -5.333 13.393 Atomic orbital electron populations 1.69998 1.08087 1.27870 1.44435 1.26341 0.95886 1.03099 0.94606 0.85126 0.77825 0.76873 0.79161 1.20975 1.17851 1.20050 1.19251 0.91646 0.83159 1.53510 0.89812 1.42536 1.32889 1.10717 1.27546 1.16721 0.83853 0.83878 0.82799 1.90553 1.70693 1.41421 1.43018 1.22889 0.98174 0.98448 0.92105 1.70219 1.22660 1.01464 1.25106 1.22675 0.98326 1.01362 0.97659 1.22197 1.02937 0.87168 1.00917 1.45314 1.27720 1.15823 1.21364 1.22088 1.00285 0.94012 0.85232 1.21959 0.98412 0.98822 0.96859 1.21702 0.97222 0.97759 0.99283 1.20480 0.93244 0.96966 0.97021 1.22974 0.94493 0.92579 0.97005 1.23154 1.02916 1.01152 0.93672 1.23183 0.99402 0.99272 1.00322 0.92987 0.77793 0.91015 0.91498 0.90267 0.87328 0.86838 0.92504 0.87642 0.87018 0.82702 0.89631 0.86722 0.86776 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.72 11.14 21.69 0.24 -54.48 16 2 C 0.01 0.38 4.75 84.98 0.40 0.78 16 3 Si 0.99 46.13 29.56 68.60 2.03 48.16 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.25 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.35 -20.33 7.94 84.13 0.67 -19.66 16 8 H 0.08 4.68 7.19 -2.91 -0.02 4.66 16 9 N -0.42 -23.66 2.85 -617.07 -1.76 -25.41 16 10 C 0.54 31.39 6.75 86.60 0.58 31.97 16 11 O -0.58 -36.64 13.04 -4.25 -0.06 -36.69 16 12 C 0.14 7.01 7.58 136.30 1.03 8.04 16 13 N -0.47 -20.44 7.61 -190.23 -1.45 -21.89 16 14 C -0.05 -1.63 11.82 83.68 0.99 -0.64 16 15 C -0.01 -0.42 6.58 41.10 0.27 -0.15 16 16 N -0.42 -16.74 3.16 -501.80 -1.58 -18.32 16 17 C 0.11 3.71 6.06 86.49 0.52 4.23 16 18 C -0.12 -2.63 5.93 30.73 0.18 -2.44 16 19 C -0.12 -2.06 5.96 30.80 0.18 -1.88 16 20 C -0.04 -0.70 6.31 30.02 0.19 -0.52 16 21 C 0.03 1.60 5.62 44.99 0.25 1.86 16 22 C -0.17 -6.82 9.80 30.62 0.30 -6.52 16 23 C -0.18 -7.14 10.37 30.62 0.32 -6.82 16 24 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 25 H 0.21 4.87 8.06 -2.91 -0.02 4.85 16 26 H 0.07 2.89 7.41 -2.39 -0.02 2.87 16 27 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 29 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.16 7.27 5.06 -2.39 -0.01 7.26 16 35 H 0.09 3.68 6.71 -2.39 -0.02 3.66 16 36 H 0.11 3.78 8.14 -2.38 -0.02 3.76 16 37 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 38 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -79.84 308.26 4.39 -75.45 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.07 Total: 24.93 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.90 Total: 8.25 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -4.55 Total: -120.11 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.06 Total: -36.69 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -79.84 4.39 -75.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.090 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds