Wall clock time and date at job start Mon Mar 30 2020 01:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 H 1.08992 * 110.64341 * 26.85733 * 3 2 1 5 5 C 1.55158 * 110.72000 * 149.99911 * 3 2 1 6 6 C 1.54915 * 101.58220 * 154.04198 * 5 3 2 7 7 N 1.47425 * 104.82896 * 322.98765 * 6 5 3 8 8 C 1.34772 * 125.64722 * 204.08538 * 7 6 5 9 9 O 1.21610 * 120.00118 * 174.55741 * 8 7 6 10 10 C 1.47440 * 120.00133 * 354.83771 * 8 7 6 11 11 C 1.39223 * 120.28046 * 321.48171 * 10 8 7 12 12 C 1.38218 * 120.09031 * 180.02562 * 11 10 8 13 13 C 1.38826 * 120.67712 * 359.97438 * 12 11 10 14 14 C 1.37599 * 120.56978 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88127 * 359.70419 * 14 13 12 16 16 C 1.40887 * 120.32774 * 180.27951 * 15 14 13 17 17 H 1.07999 * 119.99868 * 150.53436 * 16 15 14 18 18 C 1.40273 * 119.99912 * 330.53226 * 16 15 14 19 19 N 1.30625 * 120.00206 * 349.57741 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 169.57278 * 18 16 15 21 21 H 1.48506 * 109.46795 * 90.00283 * 20 18 16 22 22 H 1.48501 * 109.47426 * 210.00061 * 20 18 16 23 23 H 1.48497 * 109.47299 * 330.00277 * 20 18 16 24 24 C 1.47018 * 108.70351 * 24.36204 * 7 6 5 25 25 H 1.08993 * 109.47070 * 60.00246 * 1 2 3 26 26 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47152 * 299.99664 * 1 2 3 28 28 H 1.09007 * 111.00547 * 35.96896 * 5 3 2 29 29 H 1.08994 * 111.00583 * 272.11688 * 5 3 2 30 30 H 1.09002 * 110.36304 * 204.15286 * 6 5 3 31 31 H 1.08999 * 110.36308 * 81.82862 * 6 5 3 32 32 H 1.08001 * 119.95575 * 359.97438 * 11 10 8 33 33 H 1.08007 * 119.65905 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.71460 * 179.97438 * 13 12 11 35 35 H 1.07997 * 120.05677 * 179.97438 * 14 13 12 36 36 H 0.96997 * 119.99844 * 180.02562 * 19 18 16 37 37 H 1.08999 * 109.88730 * 118.12971 * 24 7 6 38 38 H 1.09006 * 109.87620 * 239.29189 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 3.3816 1.2958 0.7256 6 6 4.0971 2.4947 0.0544 7 7 3.6669 2.4499 -1.3550 8 6 4.3409 2.9720 -2.3988 9 8 3.9409 2.7905 -3.5329 10 6 5.5665 3.7579 -2.1664 11 6 5.6486 4.6257 -1.0808 12 6 6.7993 5.3610 -0.8668 13 6 7.8837 5.2453 -1.7259 14 6 7.8327 4.3952 -2.8067 15 6 6.6756 3.6304 -3.0430 16 6 6.6154 2.7526 -4.1434 17 1 6.0074 1.8616 -4.0908 18 6 7.3453 3.0361 -5.3073 19 7 7.9147 4.2025 -5.4534 20 14 7.5030 1.7452 -6.6483 21 1 6.3833 1.8939 -7.6125 22 1 8.7948 1.9244 -7.3585 23 1 7.4561 0.3913 -6.0402 24 6 2.3778 1.7473 -1.4323 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9172 0.3654 0.5365 29 1 3.2587 1.4634 1.7956 30 1 5.1786 2.3788 0.1248 31 1 3.7841 3.4307 0.5171 32 1 4.8118 4.7251 -0.4053 33 1 6.8553 6.0324 -0.0227 34 1 8.7750 5.8275 -1.5443 35 1 8.6810 4.3120 -3.4698 36 1 8.4191 4.3986 -6.2584 37 1 1.6128 2.4181 -1.8233 38 1 2.4707 0.8724 -2.0758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601278728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:34 Heat of formation + Delta-G solvation = -54.590417 kcal Electronic energy + Delta-G solvation = -21270.408836 eV Core-core repulsion = 18077.734754 eV Total energy + Delta-G solvation = -3192.674081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.68422 -38.18296 -36.80622 -35.74478 -33.72396 -30.95213 -29.95917 -29.55791 -28.26320 -26.60446 -25.41652 -23.49789 -21.53213 -21.21975 -20.62307 -18.79295 -17.25974 -17.09911 -16.50340 -15.44668 -15.38337 -14.95998 -14.75534 -14.62319 -14.21958 -13.61624 -13.32074 -12.92243 -12.72468 -12.51419 -12.18539 -12.01148 -11.83830 -11.75473 -11.60120 -11.32257 -11.10340 -10.96801 -10.84854 -10.62767 -10.47748 -9.94721 -9.75537 -9.63247 -9.26091 -8.66597 -8.04784 -7.55066 -7.41888 -6.79604 -4.41066 2.44807 2.82694 3.08744 3.15159 3.23749 3.40353 3.82031 3.95550 4.05472 4.55806 4.62127 4.68556 4.94721 5.15474 5.23082 5.34071 5.43864 5.55175 5.60262 5.78147 5.79351 5.91280 5.98603 6.05236 6.13951 6.21460 6.34082 6.52835 6.92644 6.99557 7.09014 7.12444 7.23118 7.46812 7.67779 7.90380 7.98064 8.15568 8.28345 8.58393 8.79508 8.86643 9.26625 10.13456 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.005698 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.076357 B = 4912.942087 C = 6104.084781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.076 3.924 4 H 0.076 0.924 5 C -0.131 4.131 6 C 0.109 3.891 7 N -0.627 5.627 8 C 0.592 3.408 9 O -0.534 6.534 10 C -0.256 4.256 11 C -0.059 4.059 12 C -0.248 4.248 13 C -0.094 4.094 14 C -0.154 4.154 15 C 0.146 3.854 16 C -0.422 4.422 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.789 5.789 20 Si 0.915 3.085 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.260 1.260 24 C 0.091 3.909 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.283 0.717 37 H 0.060 0.940 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.787 -4.168 10.370 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C 0.017 3.983 4 H 0.094 0.906 5 C -0.169 4.169 6 C -0.015 4.015 7 N -0.366 5.366 8 C 0.386 3.614 9 O -0.410 6.410 10 C -0.261 4.261 11 C -0.078 4.078 12 C -0.268 4.268 13 C -0.113 4.113 14 C -0.174 4.174 15 C 0.142 3.858 16 C -0.450 4.450 17 H 0.102 0.898 18 C -0.145 4.145 19 N -0.414 5.414 20 Si 0.739 3.261 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.033 4.033 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.713 -4.268 9.472 12.939 hybrid contribution -0.250 -0.101 -0.599 0.657 sum -7.962 -4.369 8.872 12.697 Atomic orbital electron populations 1.22815 0.81126 1.02751 1.00048 1.87948 1.19644 1.27033 1.94804 1.23185 0.95209 0.84774 0.95111 0.90614 1.22938 0.94504 0.99967 0.99463 1.22283 1.00733 0.96766 0.81707 1.48457 1.21903 1.58920 1.07312 1.18283 0.82847 0.77774 0.82464 1.90705 1.68505 1.60025 1.21813 1.19362 0.94602 1.08031 1.04082 1.20719 0.96230 0.95883 0.94964 1.20266 0.96024 1.07387 1.03101 1.20807 0.96904 0.98157 0.95411 1.21394 0.98689 0.99924 0.97352 1.17408 0.88727 0.89656 0.89988 1.19709 1.21443 1.07142 0.96713 0.89800 1.26010 0.92781 0.95725 0.99947 1.69700 1.24409 1.20206 1.27068 0.86184 0.78269 0.81474 0.80125 1.19191 1.20078 1.18375 1.22178 0.86833 0.97407 0.96898 0.93841 0.89640 0.94030 0.89556 0.89728 0.89496 0.91806 0.88860 0.89165 0.89130 0.85884 0.90619 0.92123 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.36 16 2 O -0.38 -4.78 10.45 -35.23 -0.37 -5.15 16 3 C 0.08 0.95 3.43 -24.89 -0.09 0.86 16 4 H 0.08 0.79 7.82 -51.93 -0.41 0.38 16 5 C -0.13 -1.58 6.81 -24.58 -0.17 -1.75 16 6 C 0.11 1.61 5.25 -2.53 -0.01 1.60 16 7 N -0.63 -11.95 3.32 -171.77 -0.57 -12.53 16 8 C 0.59 14.33 7.01 -12.51 -0.09 14.24 16 9 O -0.53 -14.83 15.44 5.27 0.08 -14.74 16 10 C -0.26 -6.37 5.41 -104.36 -0.56 -6.93 16 11 C -0.06 -1.28 8.21 -39.22 -0.32 -1.61 16 12 C -0.25 -5.30 10.03 -39.37 -0.39 -5.69 16 13 C -0.09 -2.13 10.01 -39.60 -0.40 -2.52 16 14 C -0.15 -3.94 8.65 -38.88 -0.34 -4.28 16 15 C 0.15 3.96 5.56 -106.54 -0.59 3.37 16 16 C -0.42 -11.73 7.73 -37.82 -0.29 -12.02 16 17 H 0.08 2.40 6.76 -52.49 -0.35 2.05 16 18 C 0.07 1.92 5.26 -17.30 -0.09 1.83 16 19 N -0.79 -20.61 10.87 55.56 0.60 -20.00 16 20 Si 0.92 19.77 29.57 -169.99 -5.03 14.75 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 24 C 0.09 1.48 6.66 -3.06 -0.02 1.46 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.31 8.11 -51.93 -0.42 -0.11 16 28 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 1.38 7.34 -51.93 -0.38 1.00 16 31 H 0.06 0.84 6.98 -51.93 -0.36 0.48 16 32 H 0.09 1.74 5.96 -52.49 -0.31 1.43 16 33 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 3.21 6.26 -52.49 -0.33 2.88 16 36 H 0.28 6.68 8.29 -40.82 -0.34 6.35 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -31.24 314.24 -7.89 -39.14 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.08 Total: 3.89 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.27 Total: -10.09 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.03 Total: -32.53 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.29 Total: -19.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.24 -7.89 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601278728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.455 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds