Wall clock time and date at job start Mon Mar 30 2020 01:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 H 1.08992 * 110.64341 * 26.85733 * 3 2 1 5 5 C 1.55158 * 110.72000 * 149.99911 * 3 2 1 6 6 C 1.54915 * 101.58220 * 154.04198 * 5 3 2 7 7 N 1.47425 * 104.82896 * 322.98765 * 6 5 3 8 8 C 1.34772 * 125.64722 * 204.08538 * 7 6 5 9 9 O 1.21610 * 120.00118 * 174.55741 * 8 7 6 10 10 C 1.47440 * 120.00133 * 354.83771 * 8 7 6 11 11 C 1.39223 * 120.28046 * 321.48171 * 10 8 7 12 12 C 1.38218 * 120.09031 * 180.02562 * 11 10 8 13 13 C 1.38826 * 120.67712 * 359.97438 * 12 11 10 14 14 C 1.37599 * 120.56978 * 359.97438 * 13 12 11 15 15 C 1.40707 * 119.88127 * 359.70419 * 14 13 12 16 16 C 1.40887 * 120.32774 * 180.27951 * 15 14 13 17 17 H 1.07999 * 119.99868 * 150.53436 * 16 15 14 18 18 C 1.40273 * 119.99912 * 330.53226 * 16 15 14 19 19 N 1.30625 * 120.00206 * 349.57741 * 18 16 15 20 20 Si 1.86801 * 119.99811 * 169.57278 * 18 16 15 21 21 H 1.48506 * 109.46795 * 90.00283 * 20 18 16 22 22 H 1.48501 * 109.47426 * 210.00061 * 20 18 16 23 23 H 1.48497 * 109.47299 * 330.00277 * 20 18 16 24 24 C 1.47018 * 108.70351 * 24.36204 * 7 6 5 25 25 H 1.08993 * 109.47070 * 60.00246 * 1 2 3 26 26 H 1.09000 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47152 * 299.99664 * 1 2 3 28 28 H 1.09007 * 111.00547 * 35.96896 * 5 3 2 29 29 H 1.08994 * 111.00583 * 272.11688 * 5 3 2 30 30 H 1.09002 * 110.36304 * 204.15286 * 6 5 3 31 31 H 1.08999 * 110.36308 * 81.82862 * 6 5 3 32 32 H 1.08001 * 119.95575 * 359.97438 * 11 10 8 33 33 H 1.08007 * 119.65905 * 179.97438 * 12 11 10 34 34 H 1.08001 * 119.71460 * 179.97438 * 13 12 11 35 35 H 1.07997 * 120.05677 * 179.97438 * 14 13 12 36 36 H 0.96997 * 119.99844 * 180.02562 * 19 18 16 37 37 H 1.08999 * 109.88730 * 118.12971 * 24 7 6 38 38 H 1.09006 * 109.87620 * 239.29189 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 3.3816 1.2958 0.7256 6 6 4.0971 2.4947 0.0544 7 7 3.6669 2.4499 -1.3550 8 6 4.3409 2.9720 -2.3988 9 8 3.9409 2.7905 -3.5329 10 6 5.5665 3.7579 -2.1664 11 6 5.6486 4.6257 -1.0808 12 6 6.7993 5.3610 -0.8668 13 6 7.8837 5.2453 -1.7259 14 6 7.8327 4.3952 -2.8067 15 6 6.6756 3.6304 -3.0430 16 6 6.6154 2.7526 -4.1434 17 1 6.0074 1.8616 -4.0908 18 6 7.3453 3.0361 -5.3073 19 7 7.9147 4.2025 -5.4534 20 14 7.5030 1.7452 -6.6483 21 1 6.3833 1.8939 -7.6125 22 1 8.7948 1.9244 -7.3585 23 1 7.4561 0.3913 -6.0402 24 6 2.3778 1.7473 -1.4323 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.9172 0.3654 0.5365 29 1 3.2587 1.4634 1.7956 30 1 5.1786 2.3788 0.1248 31 1 3.7841 3.4307 0.5171 32 1 4.8118 4.7251 -0.4053 33 1 6.8553 6.0324 -0.0227 34 1 8.7750 5.8275 -1.5443 35 1 8.6810 4.3120 -3.4698 36 1 8.4191 4.3986 -6.2584 37 1 1.6128 2.4181 -1.8233 38 1 2.4707 0.8724 -2.0758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601278728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:34 Heat of formation + Delta-G solvation = -74.775430 kcal Electronic energy + Delta-G solvation = -21271.284124 eV Core-core repulsion = 18077.734754 eV Total energy + Delta-G solvation = -3193.549369 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17974 -39.57504 -38.47648 -37.17652 -35.61424 -32.48778 -31.74397 -31.17001 -29.54361 -27.62365 -27.15630 -24.99769 -23.02623 -22.90843 -21.97345 -20.43705 -19.15064 -18.20479 -18.02396 -17.27204 -16.71664 -16.37042 -16.11167 -15.90044 -15.65966 -15.19565 -14.89286 -14.47742 -14.35188 -14.02115 -13.62630 -13.54713 -13.35088 -13.13696 -12.89944 -12.74770 -12.66482 -12.58669 -12.25437 -12.22119 -11.82584 -11.64201 -11.46718 -11.16491 -10.72785 -10.49021 -9.65503 -9.36545 -9.29596 -8.69706 -6.41337 0.58590 1.01110 1.29608 1.42469 1.47339 2.00715 2.16442 2.18833 2.70668 2.87423 3.46126 3.58488 3.67827 4.01002 4.19675 4.22652 4.31988 4.45505 4.49321 4.57004 4.62677 4.67962 4.72837 4.80690 4.85492 4.88592 4.98210 5.07622 5.13808 5.23883 5.33324 5.48933 5.60766 5.85658 6.01663 6.10762 6.21433 6.29100 6.53515 6.67862 6.85768 6.93910 7.46027 8.25701 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018599 B = 0.005698 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.076357 B = 4912.942087 C = 6104.084781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.089 3.911 4 H 0.110 0.890 5 C -0.120 4.120 6 C 0.100 3.900 7 N -0.625 5.625 8 C 0.583 3.417 9 O -0.588 6.588 10 C -0.273 4.273 11 C -0.054 4.054 12 C -0.234 4.234 13 C -0.091 4.091 14 C -0.182 4.182 15 C 0.114 3.886 16 C -0.464 4.464 17 H 0.056 0.944 18 C 0.036 3.964 19 N -0.817 5.817 20 Si 0.977 3.023 21 H -0.272 1.272 22 H -0.250 1.250 23 H -0.264 1.264 24 C 0.084 3.916 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.291 0.709 37 H 0.062 0.938 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 -3.442 13.454 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.030 3.970 4 H 0.128 0.872 5 C -0.158 4.158 6 C -0.022 4.022 7 N -0.360 5.360 8 C 0.377 3.623 9 O -0.469 6.469 10 C -0.278 4.278 11 C -0.073 4.073 12 C -0.253 4.253 13 C -0.109 4.109 14 C -0.201 4.201 15 C 0.110 3.890 16 C -0.493 4.493 17 H 0.074 0.926 18 C -0.180 4.180 19 N -0.443 5.443 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.174 1.174 23 H -0.188 1.188 24 C -0.040 4.040 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.593 -3.547 12.629 15.681 hybrid contribution -0.088 -0.269 -1.350 1.380 sum -8.681 -3.815 11.279 14.735 Atomic orbital electron populations 1.23055 0.79223 1.04073 1.01114 1.87932 1.21806 1.27077 1.94676 1.23143 0.96199 0.85610 0.92009 0.87209 1.22936 0.93457 0.97912 1.01461 1.22614 1.00543 0.99669 0.79330 1.48377 1.22304 1.57169 1.08188 1.18346 0.83100 0.78048 0.82815 1.90657 1.69919 1.62119 1.24211 1.19692 0.94356 1.08937 1.04793 1.21081 0.97692 0.94310 0.94188 1.20791 0.94762 1.06476 1.03280 1.21192 0.98615 0.96966 0.94156 1.21346 0.98049 1.01785 0.98927 1.17779 0.90137 0.90413 0.90632 1.19664 1.23383 1.07475 0.98739 0.92591 1.26694 0.92250 0.97611 1.01411 1.69718 1.25285 1.21225 1.28111 0.85297 0.78995 0.78648 0.77291 1.19699 1.17356 1.18809 1.22411 0.85577 0.96179 0.99826 0.93971 0.88387 0.91675 0.90998 0.85500 0.90755 0.88781 0.85185 0.84769 0.86094 0.87488 0.89799 0.91930 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -9.19 10.45 -148.98 -1.56 -10.75 16 3 C 0.09 1.97 3.43 31.79 0.11 2.08 16 4 H 0.11 1.75 7.82 -2.39 -0.02 1.73 16 5 C -0.12 -2.50 6.81 31.99 0.22 -2.29 16 6 C 0.10 2.71 5.25 86.86 0.46 3.17 16 7 N -0.62 -23.71 3.32 -815.61 -2.71 -26.43 16 8 C 0.58 29.23 7.01 86.67 0.61 29.83 16 9 O -0.59 -34.76 15.44 -4.06 -0.06 -34.83 16 10 C -0.27 -13.82 5.41 -19.70 -0.11 -13.92 16 11 C -0.05 -2.23 8.21 22.50 0.18 -2.04 16 12 C -0.23 -9.14 10.03 22.41 0.22 -8.91 16 13 C -0.09 -3.95 10.01 22.26 0.22 -3.73 16 14 C -0.18 -9.51 8.65 22.72 0.20 -9.31 16 15 C 0.11 6.44 5.56 -21.11 -0.12 6.33 16 16 C -0.46 -27.57 7.73 23.41 0.18 -27.39 16 17 H 0.06 3.51 6.76 -2.91 -0.02 3.49 16 18 C 0.04 1.95 5.26 85.37 0.45 2.40 16 19 N -0.82 -44.54 10.87 21.88 0.24 -44.30 16 20 Si 0.98 42.55 29.57 68.60 2.03 44.58 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.08 2.71 6.66 86.73 0.58 3.28 16 25 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 2.23 7.34 -2.39 -0.02 2.21 16 31 H 0.09 2.03 6.98 -2.39 -0.02 2.01 16 32 H 0.13 4.30 5.96 -2.91 -0.02 4.28 16 33 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.11 5.84 6.26 -2.91 -0.02 5.82 16 36 H 0.29 14.22 8.29 -92.71 -0.77 13.45 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.66 8.06 -2.38 -0.02 1.64 16 Total: -1.00 -74.05 314.24 3.43 -70.62 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 1.06 Total: 20.05 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.43 Total: -18.96 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -2.47 Total: -70.72 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.62 Total: -45.57 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.05 3.43 -70.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601278728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.151 kcal (2) G-P(sol) polarization free energy of solvation -74.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds