Wall clock time and date at job start Mon Mar 30 2020 01:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00366 * 2 1 4 4 H 1.08997 * 112.90359 * 18.75428 * 3 2 1 5 5 C 1.53785 * 113.61201 * 150.00210 * 3 2 1 6 6 C 1.53783 * 87.07814 * 89.11946 * 5 3 2 7 7 H 1.09000 * 113.61383 * 270.88134 * 6 5 3 8 8 N 1.46507 * 113.61153 * 139.97970 * 6 5 3 9 9 C 1.34777 * 119.99838 * 155.00047 * 8 6 5 10 10 O 1.21606 * 119.99973 * 359.97438 * 9 8 6 11 11 C 1.47430 * 119.99712 * 179.97438 * 9 8 6 12 12 C 1.39223 * 120.28246 * 354.16500 * 11 9 8 13 13 C 1.38227 * 120.08861 * 179.71487 * 12 11 9 14 14 C 1.38825 * 120.67744 * 0.56468 * 13 12 11 15 15 C 1.37607 * 120.57113 * 359.71212 * 14 13 12 16 16 C 1.40709 * 119.87628 * 0.02562 * 15 14 13 17 17 C 1.40889 * 120.32571 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00263 * 145.84035 * 17 16 15 19 19 C 1.40278 * 119.99829 * 325.83927 * 17 16 15 20 20 N 1.30628 * 119.99876 * 350.77302 * 19 17 16 21 21 Si 1.86802 * 119.99843 * 170.77111 * 19 17 16 22 22 H 1.48494 * 109.46984 * 60.00249 * 21 19 17 23 23 H 1.48502 * 109.46545 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47094 * 299.99479 * 21 19 17 25 25 C 1.53776 * 113.61632 * 247.50238 * 3 2 1 26 26 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46545 * 299.99594 * 1 2 3 28 28 H 1.08997 * 109.47293 * 59.99394 * 1 2 3 29 29 H 1.08995 * 113.61758 * 334.56899 * 5 3 2 30 30 H 1.09005 * 113.61012 * 203.66597 * 5 3 2 31 31 H 0.97000 * 119.99639 * 334.99760 * 8 6 5 32 32 H 1.07994 * 119.95529 * 359.97438 * 12 11 9 33 33 H 1.08002 * 119.65980 * 180.25426 * 13 12 11 34 34 H 1.08001 * 119.71820 * 179.73955 * 14 13 12 35 35 H 1.07995 * 120.06482 * 180.02562 * 15 14 13 36 36 H 0.97007 * 119.99605 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.61597 * 156.33428 * 25 3 2 38 38 H 1.08995 * 113.69145 * 25.43848 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 0.3228 5 6 3.3757 1.3717 0.7045 6 6 4.0061 1.0329 -0.6566 7 1 4.1084 -0.0373 -0.8362 8 7 5.2364 1.7780 -0.9352 9 6 6.1522 1.2731 -1.7854 10 8 5.9575 0.1988 -2.3209 11 6 7.3900 2.0232 -2.0662 12 6 7.5653 3.3056 -1.5534 13 6 8.7299 4.0029 -1.8142 14 6 9.7308 3.4428 -2.5964 15 6 9.5840 2.1796 -3.1219 16 6 8.4104 1.4464 -2.8668 17 6 8.2499 0.1524 -3.4005 18 1 7.7135 -0.5998 -2.8411 19 6 8.7868 -0.1590 -4.6585 20 7 9.2754 0.7890 -5.4129 21 14 8.8029 -1.9291 -5.2550 22 1 7.4107 -2.4414 -5.3222 23 1 9.4195 -1.9910 -6.6045 24 1 9.5920 -2.7619 -4.3122 25 6 2.7534 1.6489 -1.3017 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.5171 0.5956 1.4566 30 1 3.6313 2.3669 1.0685 31 1 5.3918 2.6348 -0.5078 32 1 6.7922 3.7544 -0.9475 33 1 8.8605 4.9957 -1.4095 34 1 10.6327 4.0032 -2.7939 35 1 10.3680 1.7516 -3.7289 36 1 9.6463 0.5736 -6.2830 37 1 2.8389 2.7197 -1.4862 38 1 2.3935 1.0972 -2.1701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601686300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:18 Heat of formation + Delta-G solvation = -38.473505 kcal Electronic energy + Delta-G solvation = -20813.114543 eV Core-core repulsion = 17621.139344 eV Total energy + Delta-G solvation = -3191.975199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83210 -38.46424 -36.79450 -35.73796 -33.74437 -32.33617 -29.89466 -29.36559 -26.84687 -25.67526 -25.49494 -24.13379 -21.99071 -20.85482 -19.76558 -19.28110 -17.51818 -16.78495 -16.25701 -15.71425 -15.24997 -15.23602 -14.86650 -14.22156 -13.93433 -13.80338 -13.41034 -13.05130 -12.67012 -12.44595 -12.40655 -12.20169 -11.84855 -11.54342 -11.46966 -11.08436 -11.03493 -10.74492 -10.67468 -10.49896 -10.30565 -10.03857 -9.65311 -9.57514 -9.22526 -8.38423 -8.24945 -7.55947 -7.32424 -6.76574 -4.35284 2.39521 2.85183 3.11984 3.18407 3.28495 3.55598 4.01064 4.04137 4.17109 4.59336 4.64127 4.71672 5.00544 5.09496 5.19892 5.24802 5.39666 5.50144 5.66642 5.68810 5.83766 5.99511 6.05414 6.12078 6.14649 6.30630 6.41645 6.68734 6.98483 7.10796 7.14566 7.21530 7.30180 7.49361 7.65167 7.91783 8.01693 8.20984 8.44500 8.70049 8.85709 8.93425 9.47136 10.18813 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.005065 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.552742 B = 5526.929027 C = 6879.628557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.064 3.936 4 H 0.075 0.925 5 C -0.149 4.149 6 C 0.140 3.860 7 H 0.115 0.885 8 N -0.739 5.739 9 C 0.564 3.436 10 O -0.537 6.537 11 C -0.262 4.262 12 C -0.057 4.057 13 C -0.247 4.247 14 C -0.096 4.096 15 C -0.148 4.148 16 C 0.146 3.854 17 C -0.416 4.416 18 H 0.105 0.895 19 C 0.070 3.930 20 N -0.794 5.794 21 Si 0.917 3.083 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.173 4.173 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.391 0.609 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.282 0.718 37 H 0.089 0.911 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 2.583 8.317 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C 0.006 3.994 4 H 0.093 0.907 5 C -0.187 4.187 6 C 0.034 3.966 7 H 0.133 0.867 8 N -0.392 5.392 9 C 0.358 3.642 10 O -0.415 6.415 11 C -0.267 4.267 12 C -0.076 4.076 13 C -0.267 4.267 14 C -0.115 4.115 15 C -0.168 4.168 16 C 0.142 3.858 17 C -0.444 4.444 18 H 0.123 0.877 19 C -0.148 4.148 20 N -0.419 5.419 21 Si 0.741 3.259 22 H -0.186 1.186 23 H -0.205 1.205 24 H -0.188 1.188 25 C -0.213 4.213 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.226 0.774 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.838 1.647 7.671 13.380 hybrid contribution -0.189 0.181 -0.244 0.358 sum -11.027 1.828 7.428 13.420 Atomic orbital electron populations 1.22794 0.81143 1.02717 0.99829 1.87919 1.19510 1.26582 1.94585 1.22916 0.94101 0.85021 0.97408 0.90701 1.23624 0.94287 1.02760 0.98068 1.22180 0.82808 0.98264 0.93382 0.86735 1.46023 1.20209 1.24013 1.48971 1.18462 0.82823 0.85237 0.77640 1.90674 1.78278 1.22282 1.50234 1.19478 0.95966 0.96080 1.15212 1.20635 0.95930 0.93761 0.97235 1.20274 0.97085 1.00147 1.09157 1.20796 0.97370 0.95763 0.97545 1.21359 0.98206 0.94863 1.02337 1.17475 0.88649 0.92228 0.87453 1.20151 1.26356 0.97268 1.00670 0.87740 1.26118 0.92258 0.99534 0.96932 1.69714 1.28461 1.34265 1.09475 0.86213 0.79884 0.82027 0.77777 1.18599 1.20486 1.18762 1.24007 0.97531 1.01747 0.97997 0.89642 0.94144 0.94003 0.90166 0.88800 0.77449 0.89310 0.89168 0.89128 0.86499 0.90700 0.89226 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.72 10.63 -35.23 -0.37 -5.10 16 3 C 0.06 0.74 4.37 -25.92 -0.11 0.63 16 4 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 5 C -0.15 -1.78 7.66 -25.92 -0.20 -1.98 16 6 C 0.14 2.23 4.17 -67.11 -0.28 1.95 16 7 H 0.11 2.16 7.46 -51.93 -0.39 1.77 16 8 N -0.74 -13.28 5.30 -54.08 -0.29 -13.56 16 9 C 0.56 13.29 7.72 -12.52 -0.10 13.19 16 10 O -0.54 -14.46 13.19 5.27 0.07 -14.39 16 11 C -0.26 -6.48 5.92 -104.37 -0.62 -7.10 16 12 C -0.06 -1.21 9.52 -39.22 -0.37 -1.59 16 13 C -0.25 -5.28 10.03 -39.37 -0.39 -5.68 16 14 C -0.10 -2.18 10.01 -39.59 -0.40 -2.58 16 15 C -0.15 -3.81 8.62 -38.88 -0.34 -4.15 16 16 C 0.15 3.97 5.51 -106.54 -0.59 3.38 16 17 C -0.42 -11.62 7.68 -37.81 -0.29 -11.91 16 18 H 0.10 3.02 5.91 -52.49 -0.31 2.71 16 19 C 0.07 1.82 5.25 -17.30 -0.09 1.73 16 20 N -0.79 -20.87 11.14 55.56 0.62 -20.25 16 21 Si 0.92 20.00 29.57 -169.99 -5.03 14.98 16 22 H -0.26 -5.87 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 25 C -0.17 -2.37 7.71 -25.92 -0.20 -2.57 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 31 H 0.39 5.97 6.79 -40.82 -0.28 5.69 16 32 H 0.09 1.55 6.44 -52.49 -0.34 1.22 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.06 6.59 -52.49 -0.35 2.71 16 36 H 0.28 6.76 8.29 -40.82 -0.34 6.42 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -30.89 318.64 -8.08 -38.98 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.01 Total: 9.84 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.88 Total: -15.29 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.33 Total: -33.81 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.31 Total: -19.49 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -8.08 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601686300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.503 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds