Wall clock time and date at job start Mon Mar 30 2020 01:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00366 * 2 1 4 4 H 1.08997 * 112.90359 * 18.75428 * 3 2 1 5 5 C 1.53785 * 113.61201 * 150.00210 * 3 2 1 6 6 C 1.53783 * 87.07814 * 89.11946 * 5 3 2 7 7 H 1.09000 * 113.61383 * 270.88134 * 6 5 3 8 8 N 1.46507 * 113.61153 * 139.97970 * 6 5 3 9 9 C 1.34777 * 119.99838 * 155.00047 * 8 6 5 10 10 O 1.21606 * 119.99973 * 359.97438 * 9 8 6 11 11 C 1.47430 * 119.99712 * 179.97438 * 9 8 6 12 12 C 1.39223 * 120.28246 * 354.16500 * 11 9 8 13 13 C 1.38227 * 120.08861 * 179.71487 * 12 11 9 14 14 C 1.38825 * 120.67744 * 0.56468 * 13 12 11 15 15 C 1.37607 * 120.57113 * 359.71212 * 14 13 12 16 16 C 1.40709 * 119.87628 * 0.02562 * 15 14 13 17 17 C 1.40889 * 120.32571 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00263 * 145.84035 * 17 16 15 19 19 C 1.40278 * 119.99829 * 325.83927 * 17 16 15 20 20 N 1.30628 * 119.99876 * 350.77302 * 19 17 16 21 21 Si 1.86802 * 119.99843 * 170.77111 * 19 17 16 22 22 H 1.48494 * 109.46984 * 60.00249 * 21 19 17 23 23 H 1.48502 * 109.46545 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47094 * 299.99479 * 21 19 17 25 25 C 1.53776 * 113.61632 * 247.50238 * 3 2 1 26 26 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46545 * 299.99594 * 1 2 3 28 28 H 1.08997 * 109.47293 * 59.99394 * 1 2 3 29 29 H 1.08995 * 113.61758 * 334.56899 * 5 3 2 30 30 H 1.09005 * 113.61012 * 203.66597 * 5 3 2 31 31 H 0.97000 * 119.99639 * 334.99760 * 8 6 5 32 32 H 1.07994 * 119.95529 * 359.97438 * 12 11 9 33 33 H 1.08002 * 119.65980 * 180.25426 * 13 12 11 34 34 H 1.08001 * 119.71820 * 179.73955 * 14 13 12 35 35 H 1.07995 * 120.06482 * 180.02562 * 15 14 13 36 36 H 0.97007 * 119.99605 * 180.02562 * 20 19 17 37 37 H 1.08997 * 113.61597 * 156.33428 * 25 3 2 38 38 H 1.08995 * 113.69145 * 25.43848 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3144 2.0797 0.3228 5 6 3.3757 1.3717 0.7045 6 6 4.0061 1.0329 -0.6566 7 1 4.1084 -0.0373 -0.8362 8 7 5.2364 1.7780 -0.9352 9 6 6.1522 1.2731 -1.7854 10 8 5.9575 0.1988 -2.3209 11 6 7.3900 2.0232 -2.0662 12 6 7.5653 3.3056 -1.5534 13 6 8.7299 4.0029 -1.8142 14 6 9.7308 3.4428 -2.5964 15 6 9.5840 2.1796 -3.1219 16 6 8.4104 1.4464 -2.8668 17 6 8.2499 0.1524 -3.4005 18 1 7.7135 -0.5998 -2.8411 19 6 8.7868 -0.1590 -4.6585 20 7 9.2754 0.7890 -5.4129 21 14 8.8029 -1.9291 -5.2550 22 1 7.4107 -2.4414 -5.3222 23 1 9.4195 -1.9910 -6.6045 24 1 9.5920 -2.7619 -4.3122 25 6 2.7534 1.6489 -1.3017 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 3.5171 0.5956 1.4566 30 1 3.6313 2.3669 1.0685 31 1 5.3918 2.6348 -0.5078 32 1 6.7922 3.7544 -0.9475 33 1 8.8605 4.9957 -1.4095 34 1 10.6327 4.0032 -2.7939 35 1 10.3680 1.7516 -3.7289 36 1 9.6463 0.5736 -6.2830 37 1 2.8389 2.7197 -1.4862 38 1 2.3935 1.0972 -2.1701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601686300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:17 Heat of formation + Delta-G solvation = -58.923270 kcal Electronic energy + Delta-G solvation = -20814.001312 eV Core-core repulsion = 17621.139344 eV Total energy + Delta-G solvation = -3192.861968 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.14251 -39.99310 -38.46866 -36.98365 -35.62032 -33.93436 -31.76148 -31.14602 -27.69245 -27.30656 -26.67508 -25.49015 -23.65671 -22.65744 -21.22651 -20.70007 -19.33844 -18.03563 -17.84091 -17.10094 -16.81694 -16.26604 -16.08873 -15.90781 -15.51604 -15.34938 -14.98349 -14.52944 -14.46916 -14.03495 -13.56486 -13.37301 -13.25219 -13.03960 -12.84513 -12.79395 -12.51854 -12.35282 -12.25901 -11.90728 -11.88903 -11.49306 -11.31660 -11.13785 -10.49441 -10.22897 -9.84547 -9.37191 -9.21398 -8.67409 -6.35802 0.53540 1.02928 1.31719 1.43344 1.50501 2.20573 2.36051 2.53930 2.74865 2.79444 3.55933 3.64014 3.73763 3.95940 4.13355 4.26826 4.38259 4.45219 4.55387 4.59018 4.61988 4.73723 4.84610 4.85815 4.89917 5.04470 5.07054 5.10287 5.20478 5.26823 5.35359 5.63295 5.76576 5.84209 6.07504 6.11866 6.32433 6.35975 6.66572 6.82434 6.94047 7.04394 7.71311 8.30036 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.005065 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.552742 B = 5526.929027 C = 6879.628557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.075 3.925 4 H 0.113 0.887 5 C -0.130 4.130 6 C 0.116 3.884 7 H 0.073 0.927 8 N -0.716 5.716 9 C 0.557 3.443 10 O -0.584 6.584 11 C -0.281 4.281 12 C -0.052 4.052 13 C -0.236 4.236 14 C -0.092 4.092 15 C -0.179 4.179 16 C 0.114 3.886 17 C -0.460 4.460 18 H 0.079 0.921 19 C 0.032 3.968 20 N -0.823 5.823 21 Si 0.977 3.023 22 H -0.276 1.276 23 H -0.257 1.257 24 H -0.257 1.257 25 C -0.171 4.171 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.127 0.873 31 H 0.408 0.592 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.289 0.711 37 H 0.109 0.891 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 5.195 10.218 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.016 3.984 4 H 0.131 0.869 5 C -0.168 4.168 6 C 0.011 3.989 7 H 0.091 0.909 8 N -0.369 5.369 9 C 0.350 3.650 10 O -0.465 6.465 11 C -0.286 4.286 12 C -0.071 4.071 13 C -0.255 4.255 14 C -0.111 4.111 15 C -0.198 4.198 16 C 0.111 3.889 17 C -0.489 4.489 18 H 0.097 0.903 19 C -0.182 4.182 20 N -0.450 5.450 21 Si 0.798 3.202 22 H -0.201 1.201 23 H -0.181 1.181 24 H -0.181 1.181 25 C -0.210 4.210 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.145 0.855 31 H 0.246 0.754 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.139 4.305 9.613 16.072 hybrid contribution 0.122 -0.466 -0.691 0.843 sum -12.017 3.839 8.922 15.451 Atomic orbital electron populations 1.23006 0.79217 1.03734 1.01145 1.87893 1.21787 1.27661 1.94603 1.22916 0.94607 0.85558 0.95276 0.86908 1.23608 0.93450 1.04398 0.95382 1.22402 0.82656 0.96249 0.97610 0.90900 1.45753 1.19665 1.24375 1.47064 1.18552 0.83556 0.84704 0.78150 1.90653 1.79242 1.24288 1.52343 1.19875 0.96023 0.97742 1.14995 1.21081 0.97279 0.92140 0.96575 1.20822 0.95912 1.01596 1.07176 1.21194 0.98928 0.94591 0.96353 1.21298 0.97775 0.96596 1.04153 1.17863 0.89925 0.92640 0.88498 1.20096 1.28727 0.97888 1.02178 0.90349 1.26766 0.91777 1.03224 0.96472 1.69736 1.29631 1.35629 1.09979 0.85341 0.79053 0.77432 0.78347 1.20125 1.18079 1.18119 1.24026 0.96321 1.02280 0.98393 0.89013 0.91952 0.93423 0.90312 0.85476 0.75417 0.84627 0.84754 0.86203 0.88291 0.90030 0.87277 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.85 113.37 1.23 1.62 16 2 O -0.40 -9.73 10.63 -148.98 -1.58 -11.32 16 3 C 0.07 1.52 4.37 31.12 0.14 1.66 16 4 H 0.11 1.51 7.87 -2.39 -0.02 1.49 16 5 C -0.13 -2.74 7.66 31.12 0.24 -2.50 16 6 C 0.12 3.66 4.17 45.52 0.19 3.85 16 7 H 0.07 2.92 7.46 -2.39 -0.02 2.91 16 8 N -0.72 -25.00 5.30 -443.27 -2.35 -27.35 16 9 C 0.56 26.91 7.72 86.66 0.67 27.58 16 10 O -0.58 -33.55 13.19 -4.05 -0.05 -33.60 16 11 C -0.28 -14.01 5.92 -19.70 -0.12 -14.12 16 12 C -0.05 -2.08 9.52 22.50 0.21 -1.87 16 13 C -0.24 -9.16 10.03 22.41 0.22 -8.94 16 14 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 15 C -0.18 -9.40 8.62 22.72 0.20 -9.21 16 16 C 0.11 6.47 5.51 -21.11 -0.12 6.36 16 17 C -0.46 -27.43 7.68 23.42 0.18 -27.25 16 18 H 0.08 4.94 5.91 -2.91 -0.02 4.93 16 19 C 0.03 1.77 5.25 85.37 0.45 2.22 16 20 N -0.82 -45.21 11.14 21.88 0.24 -44.96 16 21 Si 0.98 43.20 29.57 68.60 2.03 45.23 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 C -0.17 -4.44 7.71 31.12 0.24 -4.21 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.13 1.85 8.12 -2.38 -0.02 1.83 16 31 H 0.41 11.11 6.79 -92.71 -0.63 10.48 16 32 H 0.14 4.04 6.44 -2.91 -0.02 4.02 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 35 H 0.10 5.44 6.59 -2.91 -0.02 5.42 16 36 H 0.29 14.34 8.29 -92.70 -0.77 13.57 16 37 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.64 318.64 2.69 -70.95 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.45 Total: 29.64 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 3.96 Total: -28.59 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.11 Total: -72.31 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.64 Total: -44.92 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -73.64 2.69 -70.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601686300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.029 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds