Wall clock time and date at job start Mon Mar 30 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47287 * 264.65609 * 3 2 1 5 5 H 1.48501 * 109.47235 * 24.65291 * 3 2 1 6 6 H 1.48499 * 109.47328 * 144.65502 * 3 2 1 7 7 C 1.37874 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99856 * 345.61297 * 7 2 1 9 9 C 1.50699 * 120.00475 * 165.61411 * 7 2 1 10 10 C 1.52998 * 115.54752 * 294.61938 * 9 7 2 11 11 N 1.46896 * 109.47616 * 292.50159 * 10 9 7 12 12 C 1.47134 * 111.00742 * 176.85192 * 11 10 9 13 13 C 1.52930 * 108.82180 * 165.40307 * 12 11 10 14 14 C 1.50667 * 109.86459 * 50.48096 * 13 12 11 15 15 N 1.32298 * 119.00237 * 163.00106 * 14 13 12 16 16 N 1.28200 * 122.43534 * 179.80898 * 15 14 13 17 17 C 1.32367 * 122.14796 * 359.97438 * 16 15 14 18 18 O 1.35695 * 120.23504 * 180.02562 * 17 16 15 19 19 C 1.39207 * 119.53872 * 0.08470 * 17 16 15 20 20 C 1.38137 * 121.38297 * 342.94901 * 14 13 12 21 21 C 1.46679 * 111.10262 * 53.67085 * 11 10 9 22 22 C 1.52996 * 117.49870 * 80.28764 * 9 7 2 23 23 C 1.52998 * 117.50010 * 148.94846 * 9 7 2 24 24 H 0.97003 * 120.00535 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47282 * 172.49969 * 10 9 7 26 26 H 1.09006 * 109.47438 * 52.50332 * 10 9 7 27 27 H 1.08999 * 109.59825 * 45.56198 * 12 11 10 28 28 H 1.09003 * 109.60175 * 285.24707 * 12 11 10 29 29 H 1.09005 * 109.40582 * 170.59999 * 13 12 11 30 30 H 1.08997 * 109.40418 * 290.35389 * 13 12 11 31 31 H 0.96696 * 113.99901 * 270.02005 * 18 17 16 32 32 H 1.07999 * 121.03406 * 179.97438 * 19 17 16 33 33 H 1.08997 * 109.17441 * 55.19970 * 21 11 10 34 34 H 1.08999 * 109.21322 * 295.71956 * 21 11 10 35 35 H 1.09005 * 117.50072 * 215.00857 * 22 9 7 36 36 H 1.09001 * 117.50301 * 0.02562 * 22 9 7 37 37 H 1.08991 * 117.50098 * 359.97438 * 23 9 7 38 38 H 1.09011 * 117.49658 * 144.97796 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6095 1.9812 -1.3940 5 1 1.3946 2.6827 0.5840 6 1 3.4856 1.4755 0.8099 7 6 2.0045 -1.1940 -0.0005 8 1 1.4900 -2.1148 0.2315 9 6 3.4761 -1.2143 -0.3248 10 6 3.8426 -0.8080 -1.7536 11 7 3.3481 -1.8228 -2.6935 12 6 3.6170 -1.4284 -4.0852 13 6 3.4261 -2.6471 -4.9891 14 6 2.0962 -3.2943 -4.7019 15 7 1.5900 -4.1395 -5.5849 16 7 0.4661 -4.7296 -5.4060 17 6 -0.2675 -4.5338 -4.3217 18 8 -1.4516 -5.1796 -4.1721 19 6 0.1835 -3.6598 -3.3366 20 6 1.4005 -3.0235 -3.5396 21 6 1.9147 -2.0672 -2.5008 22 6 4.4506 -0.8311 0.7907 23 6 4.3323 -2.2908 0.3453 24 1 -0.4851 0.8400 0.0004 25 1 4.9261 -0.7282 -1.8420 26 1 3.3872 0.1548 -1.9857 27 1 4.6415 -1.0663 -4.1711 28 1 2.9247 -0.6407 -4.3824 29 1 3.4581 -2.3329 -6.0324 30 1 4.2256 -3.3644 -4.8036 31 1 -2.2099 -4.6986 -4.5306 32 1 -0.3957 -3.4818 -2.4426 33 1 1.3764 -1.1229 -2.5819 34 1 1.7530 -2.4904 -1.5094 35 1 5.3529 -0.2894 0.5067 36 1 4.0275 -0.5646 1.7592 37 1 3.8314 -2.9840 1.0209 38 1 5.1566 -2.7098 -0.2321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602815175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:48 Heat of formation + Delta-G solvation = 56.559242 kcal Electronic energy + Delta-G solvation = -21836.440565 eV Core-core repulsion = 18680.879045 eV Total energy + Delta-G solvation = -3155.561519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09975 -38.55538 -37.41267 -36.06187 -32.99080 -32.47631 -32.29505 -29.54755 -27.18090 -26.23142 -24.42622 -23.36728 -22.69578 -21.53011 -20.22380 -19.01706 -18.61657 -17.39271 -16.50891 -15.98426 -15.54341 -15.32249 -14.99588 -14.31193 -14.08112 -13.79213 -13.35582 -13.26781 -12.90620 -12.67098 -12.29496 -12.09846 -11.87966 -11.64683 -11.61013 -11.32461 -11.12209 -10.77916 -10.57002 -10.44899 -10.21789 -9.63156 -9.49509 -9.19365 -9.14113 -9.06283 -8.76252 -8.45839 -7.72380 -6.33123 -4.25717 1.02172 1.07747 3.12735 3.26683 3.33872 3.45875 3.78538 4.19334 4.26391 4.45592 4.74439 4.84767 4.93082 5.07498 5.20619 5.24731 5.42996 5.49707 5.66072 5.78995 5.86800 5.96925 6.00247 6.10734 6.15765 6.21627 6.23035 6.34580 6.41153 6.51216 6.51728 6.72443 6.93758 7.02329 7.11722 7.43395 7.54995 7.61353 7.67358 8.29910 8.67919 8.91831 9.31823 10.77023 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019859 B = 0.006542 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.572532 B = 4278.756225 C = 4868.561170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.864 3.136 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.488 4.488 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.090 3.910 11 N -0.522 5.522 12 C 0.043 3.957 13 C -0.052 4.052 14 C 0.065 3.935 15 N -0.226 5.226 16 N -0.273 5.273 17 C 0.246 3.754 18 O -0.476 6.476 19 C -0.136 4.136 20 C -0.042 4.042 21 C 0.088 3.912 22 C -0.195 4.195 23 C -0.169 4.169 24 H 0.266 0.734 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.401 0.599 32 H 0.160 0.840 33 H 0.068 0.932 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -1.687 -6.680 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.123 4.123 3 Si 0.691 3.309 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.174 1.174 7 C -0.525 4.525 8 H 0.099 0.901 9 C -0.007 4.007 10 C -0.038 4.038 11 N -0.245 5.245 12 C -0.086 4.086 13 C -0.092 4.092 14 C -0.079 4.079 15 N -0.072 5.072 16 N -0.125 5.125 17 C 0.061 3.939 18 O -0.281 6.281 19 C -0.166 4.166 20 C -0.053 4.053 21 C -0.039 4.039 22 C -0.233 4.233 23 C -0.207 4.207 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.258 0.742 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.973 -3.240 -7.704 9.254 hybrid contribution -0.713 2.758 1.081 3.046 sum 3.260 -0.482 -6.623 7.398 Atomic orbital electron populations 1.69922 1.06316 1.27428 1.48515 1.24881 0.94419 0.98925 0.94079 0.87090 0.81381 0.83628 0.78798 1.20555 1.21967 1.17402 1.20196 0.89432 0.94888 1.48000 0.90135 1.19396 0.93288 0.99719 0.88291 1.21886 0.97437 0.92040 0.92416 1.62277 1.15963 1.44231 1.02061 1.22209 1.01417 0.95203 0.89767 1.20333 0.91672 0.97211 0.99939 1.22583 0.98178 0.95677 0.91466 1.72936 1.04031 1.04968 1.25276 1.72714 1.01777 1.18682 1.19364 1.20767 0.89710 0.91638 0.91758 1.84776 1.14134 1.47610 1.81611 1.22527 0.97524 0.95084 1.01465 1.21233 0.92759 0.95922 0.95372 1.21736 0.87124 0.96709 0.98337 1.23050 1.01236 0.97897 1.01092 1.22681 1.02491 0.91406 1.04074 0.92413 0.92403 0.94976 0.90019 0.94630 0.89457 0.88779 0.74212 0.82285 0.91469 0.83373 0.91468 0.89662 0.90090 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 13.96 55.43 0.77 -22.91 16 2 C 0.08 2.02 5.20 -17.82 -0.09 1.93 16 3 Si 0.86 19.50 25.50 -169.99 -4.34 15.16 16 4 H -0.28 -6.21 6.61 56.52 0.37 -5.84 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.25 -5.42 5.85 56.52 0.33 -5.09 16 7 C -0.49 -11.67 5.92 -34.44 -0.20 -11.87 16 8 H 0.08 2.11 7.34 -52.49 -0.39 1.73 16 9 C -0.01 -0.12 0.73 -155.66 -0.11 -0.23 16 10 C 0.09 1.69 4.72 -3.83 -0.02 1.67 16 11 N -0.52 -9.22 4.78 -236.37 -1.13 -10.35 16 12 C 0.04 0.63 5.55 -3.73 -0.02 0.61 16 13 C -0.05 -0.72 6.21 -27.93 -0.17 -0.90 16 14 C 0.07 1.10 6.73 -82.44 -0.56 0.54 16 15 N -0.23 -4.03 11.40 33.55 0.38 -3.65 16 16 N -0.27 -4.91 11.52 30.50 0.35 -4.56 16 17 C 0.25 4.04 7.86 -16.96 -0.13 3.90 16 18 O -0.48 -6.58 13.58 -18.79 -0.26 -6.84 16 19 C -0.14 -2.29 9.83 -39.00 -0.38 -2.67 16 20 C -0.04 -0.74 5.79 -104.65 -0.61 -1.34 16 21 C 0.09 1.68 3.88 -5.31 -0.02 1.66 16 22 C -0.19 -3.77 7.77 -26.70 -0.21 -3.98 16 23 C -0.17 -3.19 9.96 -26.69 -0.27 -3.45 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 26 H 0.03 0.65 5.52 -51.93 -0.29 0.37 16 27 H 0.08 1.02 8.02 -51.93 -0.42 0.61 16 28 H 0.04 0.54 8.05 -51.93 -0.42 0.12 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.40 3.36 9.06 45.56 0.41 3.77 16 32 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.07 1.44 7.77 -51.93 -0.40 1.04 16 34 H 0.15 3.19 4.75 -51.93 -0.25 2.94 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -27.96 304.23 -6.78 -34.74 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.35 Total: 7.95 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.79 Total: -14.13 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.38 Total: -41.47 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.26 Total: -6.84 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.34 Total: 15.16 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.96 -6.78 -34.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602815175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.295 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds