Wall clock time and date at job start Mon Mar 30 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00215 * 2 1 4 4 C 1.53004 * 109.47051 * 180.02562 * 3 2 1 5 5 C 1.53488 * 114.20334 * 175.00130 * 4 3 2 6 6 N 1.47074 * 87.98371 * 139.65502 * 5 4 3 7 7 C 1.34774 * 136.05332 * 152.84353 * 6 5 4 8 8 O 1.21548 * 120.00745 * 359.68685 * 7 6 5 9 9 C 1.47892 * 119.99558 * 179.69060 * 7 6 5 10 10 C 1.39918 * 120.02540 * 352.81121 * 9 7 6 11 11 C 1.38334 * 120.35716 * 180.27947 * 10 9 7 12 12 C 1.37745 * 120.41188 * 359.72468 * 11 10 9 13 13 C 1.40752 * 120.04296 * 0.02562 * 12 11 10 14 14 C 1.41436 * 120.18140 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99514 * 334.98480 * 14 13 12 16 16 C 1.39937 * 120.00009 * 154.98730 * 14 13 12 17 17 N 1.30822 * 120.00057 * 340.96459 * 16 14 13 18 18 Si 1.86804 * 119.99578 * 160.96185 * 16 14 13 19 19 H 1.48492 * 109.47036 * 60.00135 * 18 16 14 20 20 H 1.48503 * 109.46624 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47203 * 299.99499 * 18 16 14 22 22 C 1.39000 * 120.02427 * 172.53816 * 9 7 6 23 23 C 1.47059 * 87.88214 * 333.10144 * 6 5 4 24 24 H 1.08993 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46536 * 299.99935 * 1 2 3 26 26 H 1.09000 * 109.47167 * 59.99252 * 1 2 3 27 27 H 1.08994 * 109.46716 * 60.00447 * 3 2 1 28 28 H 1.08997 * 109.47018 * 300.00720 * 3 2 1 29 29 H 1.08997 * 113.41043 * 41.79852 * 4 3 2 30 30 H 1.09004 * 113.47263 * 24.87652 * 5 4 3 31 31 H 1.09005 * 113.46923 * 254.43176 * 5 4 3 32 32 H 1.07997 * 119.81930 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.79280 * 179.70330 * 11 10 9 34 34 H 1.08004 * 119.98064 * 179.97438 * 12 11 10 35 35 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.20263 * 359.97438 * 22 9 7 37 37 H 1.09006 * 113.46666 * 141.67920 * 23 6 5 38 38 H 1.08999 * 113.46978 * 272.11427 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.2730 2.5252 -0.1227 6 7 5.2375 2.0256 0.8689 7 6 6.5331 2.2528 1.1623 8 8 7.1742 3.0502 0.5061 9 6 7.1750 1.5316 2.2826 10 6 6.4048 0.7289 3.1314 11 6 6.9971 0.0559 4.1849 12 6 8.3522 0.1634 4.4073 13 6 9.1441 0.9620 3.5609 14 6 10.5359 1.0741 3.7863 15 1 10.9375 0.9113 4.7755 16 6 11.3924 1.3958 2.7275 17 7 10.9956 1.2312 1.4919 18 14 13.1025 2.0606 3.0787 19 1 13.8682 1.0639 3.8694 20 1 13.8055 2.3202 1.7966 21 1 12.9934 3.3255 3.8489 22 6 8.5447 1.6462 2.4898 23 6 4.1677 1.1646 1.3950 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.9080 0.4072 -0.6676 30 1 3.6891 3.3755 0.2298 31 1 4.7099 2.6923 -1.1073 32 1 5.3416 0.6376 2.9655 33 1 6.3932 -0.5574 4.8372 34 1 8.8073 -0.3648 5.2321 35 1 11.5895 1.4539 0.7579 36 1 9.1438 2.2607 1.8343 37 1 4.5152 0.1769 1.6984 38 1 3.5556 1.6487 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603148574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:53 Heat of formation + Delta-G solvation = -17.352942 kcal Electronic energy + Delta-G solvation = -20561.540348 eV Core-core repulsion = 17370.481005 eV Total energy + Delta-G solvation = -3191.059343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32327 -38.24826 -37.38627 -36.60927 -33.71703 -31.20087 -29.89056 -29.41553 -27.26152 -26.22463 -25.43800 -24.96401 -22.14517 -20.93859 -20.38507 -18.81534 -17.54161 -16.78149 -16.37663 -15.92597 -15.72125 -15.56799 -14.86643 -14.64561 -14.28240 -13.66966 -13.36566 -13.21526 -12.83971 -12.55763 -12.50238 -12.45250 -11.91947 -11.80273 -11.60811 -11.20784 -11.13863 -11.06944 -10.88582 -10.53018 -10.32371 -9.99978 -9.88183 -9.57145 -9.17649 -8.98758 -8.37846 -7.60913 -7.49840 -6.79389 -4.39065 2.21686 2.83714 3.08724 3.10450 3.18182 3.19290 3.49335 3.84720 3.93512 4.29615 4.62672 4.81410 4.93409 5.02304 5.09976 5.16530 5.28702 5.32384 5.41963 5.42146 5.51153 5.62084 5.65271 5.77162 6.07667 6.18545 6.29040 6.38539 6.76169 6.92268 7.00707 7.06033 7.22794 7.39770 7.72149 7.83051 7.94442 8.16218 8.19762 8.51540 8.81659 8.84572 8.91470 10.16390 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.003828 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.864990 B = 7312.571698 C = 7911.302747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.075 3.925 4 C -0.128 4.128 5 C 0.113 3.887 6 N -0.647 5.647 7 C 0.595 3.405 8 O -0.545 6.545 9 C -0.123 4.123 10 C -0.228 4.228 11 C -0.100 4.100 12 C -0.210 4.210 13 C 0.100 3.900 14 C -0.463 4.463 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.910 3.090 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.093 4.093 23 C 0.107 3.893 24 H 0.085 0.915 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.285 0.715 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.251 -0.395 -2.586 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.002 4.002 4 C -0.147 4.147 5 C -0.011 4.011 6 N -0.384 5.384 7 C 0.389 3.611 8 O -0.423 6.423 9 C -0.126 4.126 10 C -0.247 4.247 11 C -0.118 4.118 12 C -0.230 4.230 13 C 0.097 3.903 14 C -0.491 4.491 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.408 5.408 18 Si 0.734 3.266 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.187 1.187 22 C -0.113 4.113 23 C -0.017 4.017 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.431 -0.061 -3.139 15.747 hybrid contribution 0.473 0.464 0.112 0.672 sum -14.958 0.402 -3.027 15.267 Atomic orbital electron populations 1.22737 0.81122 1.02775 0.99887 1.87918 1.19554 1.27817 1.95396 1.22418 0.92413 0.84857 1.00553 1.23004 0.92854 0.99405 0.99484 1.22783 0.88427 0.95423 0.94427 1.49363 1.08354 1.44689 1.35963 1.18501 0.78190 0.80902 0.83463 1.90702 1.62215 1.36781 1.52576 1.19374 0.94942 1.01969 0.96289 1.20902 0.98268 1.05621 0.99947 1.20466 0.94864 0.99345 0.97110 1.21116 0.93698 1.04263 1.03942 1.17571 0.93368 0.88821 0.90539 1.19537 0.91250 1.42219 0.96135 0.90085 1.25954 1.01118 0.92970 0.94429 1.69788 1.37884 1.33343 0.99819 0.86336 0.81068 0.80432 0.78747 1.18966 1.20241 1.18714 1.21574 0.91113 0.99248 0.99397 1.23123 0.86612 0.96564 0.95367 0.89638 0.94053 0.94183 0.92698 0.92706 0.86894 0.90261 0.90334 0.87707 0.88909 0.88628 0.90406 0.85149 0.88972 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.06 10.70 -35.23 -0.38 -4.44 16 3 C 0.07 0.68 5.85 37.16 0.22 0.89 16 4 C -0.13 -1.46 4.34 -90.25 -0.39 -1.85 16 5 C 0.11 1.48 8.20 -8.52 -0.07 1.41 16 6 N -0.65 -11.55 3.68 -186.52 -0.69 -12.24 16 7 C 0.59 13.88 8.01 -12.31 -0.10 13.78 16 8 O -0.54 -14.44 17.13 5.32 0.09 -14.35 16 9 C -0.12 -3.03 5.87 -105.03 -0.62 -3.64 16 10 C -0.23 -4.97 9.17 -38.92 -0.36 -5.33 16 11 C -0.10 -2.18 10.01 -39.73 -0.40 -2.57 16 12 C -0.21 -5.10 9.78 -38.81 -0.38 -5.47 16 13 C 0.10 2.69 5.56 -106.87 -0.59 2.09 16 14 C -0.46 -12.36 9.04 -37.73 -0.34 -12.70 16 15 H 0.08 2.05 7.91 -52.49 -0.42 1.63 16 16 C 0.07 1.92 5.11 -17.35 -0.09 1.83 16 17 N -0.78 -21.14 11.06 55.55 0.61 -20.53 16 18 Si 0.91 19.08 29.60 -169.99 -5.03 14.05 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.09 -2.56 8.24 -38.44 -0.32 -2.87 16 23 C 0.11 1.45 5.89 -8.66 -0.05 1.40 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.05 0.43 7.81 -51.93 -0.41 0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.11 1.93 3.95 -52.49 -0.21 1.72 16 33 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 35 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 36 H 0.13 3.86 5.84 -52.49 -0.31 3.56 16 37 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 38 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 LS Contribution 320.72 15.07 4.83 4.83 Total: -1.00 -31.82 320.72 -7.94 -39.76 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.01 Total: 4.61 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.37 Total: -11.70 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: -0.07 Total: -32.76 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.29 Total: -18.79 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.82 -7.94 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603148574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.410 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds