Wall clock time and date at job start Mon Mar 30 2020 01:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42907 * 114.00215 * 2 1 4 4 C 1.53004 * 109.47051 * 180.02562 * 3 2 1 5 5 C 1.53488 * 114.20334 * 175.00130 * 4 3 2 6 6 N 1.47074 * 87.98371 * 139.65502 * 5 4 3 7 7 C 1.34774 * 136.05332 * 152.84353 * 6 5 4 8 8 O 1.21548 * 120.00745 * 359.68685 * 7 6 5 9 9 C 1.47892 * 119.99558 * 179.69060 * 7 6 5 10 10 C 1.39918 * 120.02540 * 352.81121 * 9 7 6 11 11 C 1.38334 * 120.35716 * 180.27947 * 10 9 7 12 12 C 1.37745 * 120.41188 * 359.72468 * 11 10 9 13 13 C 1.40752 * 120.04296 * 0.02562 * 12 11 10 14 14 C 1.41436 * 120.18140 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99514 * 334.98480 * 14 13 12 16 16 C 1.39937 * 120.00009 * 154.98730 * 14 13 12 17 17 N 1.30822 * 120.00057 * 340.96459 * 16 14 13 18 18 Si 1.86804 * 119.99578 * 160.96185 * 16 14 13 19 19 H 1.48492 * 109.47036 * 60.00135 * 18 16 14 20 20 H 1.48503 * 109.46624 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47203 * 299.99499 * 18 16 14 22 22 C 1.39000 * 120.02427 * 172.53816 * 9 7 6 23 23 C 1.47059 * 87.88214 * 333.10144 * 6 5 4 24 24 H 1.08993 * 109.47628 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46536 * 299.99935 * 1 2 3 26 26 H 1.09000 * 109.47167 * 59.99252 * 1 2 3 27 27 H 1.08994 * 109.46716 * 60.00447 * 3 2 1 28 28 H 1.08997 * 109.47018 * 300.00720 * 3 2 1 29 29 H 1.08997 * 113.41043 * 41.79852 * 4 3 2 30 30 H 1.09004 * 113.47263 * 24.87652 * 5 4 3 31 31 H 1.09005 * 113.46923 * 254.43176 * 5 4 3 32 32 H 1.07997 * 119.81930 * 0.02562 * 10 9 7 33 33 H 1.07999 * 119.79280 * 179.70330 * 11 10 9 34 34 H 1.08004 * 119.98064 * 179.97438 * 12 11 10 35 35 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 36 36 H 1.07998 * 120.20263 * 359.97438 * 22 9 7 37 37 H 1.09006 * 113.46666 * 141.67920 * 23 6 5 38 38 H 1.08999 * 113.46978 * 272.11427 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.2730 2.5252 -0.1227 6 7 5.2375 2.0256 0.8689 7 6 6.5331 2.2528 1.1623 8 8 7.1742 3.0502 0.5061 9 6 7.1750 1.5316 2.2826 10 6 6.4048 0.7289 3.1314 11 6 6.9971 0.0559 4.1849 12 6 8.3522 0.1634 4.4073 13 6 9.1441 0.9620 3.5609 14 6 10.5359 1.0741 3.7863 15 1 10.9375 0.9113 4.7755 16 6 11.3924 1.3958 2.7275 17 7 10.9956 1.2312 1.4919 18 14 13.1025 2.0606 3.0787 19 1 13.8682 1.0639 3.8694 20 1 13.8055 2.3202 1.7966 21 1 12.9934 3.3255 3.8489 22 6 8.5447 1.6462 2.4898 23 6 4.1677 1.1646 1.3950 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.9080 0.4072 -0.6676 30 1 3.6891 3.3755 0.2298 31 1 4.7099 2.6923 -1.1073 32 1 5.3416 0.6376 2.9655 33 1 6.3932 -0.5574 4.8372 34 1 8.8073 -0.3648 5.2321 35 1 11.5895 1.4539 0.7579 36 1 9.1438 2.2607 1.8343 37 1 4.5152 0.1769 1.6984 38 1 3.5556 1.6487 2.1559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603148574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:52 Heat of formation + Delta-G solvation = -38.304355 kcal Electronic energy + Delta-G solvation = -20562.448869 eV Core-core repulsion = 17370.481005 eV Total energy + Delta-G solvation = -3191.967865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65777 -39.68830 -38.67155 -38.10207 -35.61802 -32.73609 -31.45553 -31.21717 -28.18932 -27.61254 -26.74807 -26.18974 -23.70723 -22.80639 -21.59663 -20.35794 -19.28708 -17.72918 -17.60602 -17.50174 -16.94549 -16.65837 -16.41521 -16.33243 -15.51588 -15.10716 -15.04892 -14.69748 -14.32488 -14.14233 -13.75757 -13.60186 -13.42420 -12.98503 -12.86977 -12.83031 -12.58583 -12.46950 -12.21969 -12.02055 -11.88072 -11.67861 -11.30111 -11.07040 -10.75980 -10.46947 -9.86590 -9.47261 -9.39261 -8.69659 -6.39873 0.34387 0.98721 1.34531 1.46536 1.49586 1.81785 2.03589 2.17766 2.72661 2.78407 3.36115 3.64883 3.66685 3.97694 4.13207 4.27486 4.35236 4.45045 4.49201 4.54317 4.58794 4.59979 4.66348 4.68556 4.76617 4.84200 4.96563 4.98242 5.08021 5.18644 5.25175 5.31263 5.49699 5.84573 5.92925 6.02023 6.26868 6.31949 6.52761 6.65618 6.85429 6.92319 7.18423 8.28212 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.003828 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.864990 B = 7312.571698 C = 7911.302747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.079 3.921 4 C -0.106 4.106 5 C 0.108 3.892 6 N -0.652 5.652 7 C 0.584 3.416 8 O -0.596 6.596 9 C -0.136 4.136 10 C -0.210 4.210 11 C -0.096 4.096 12 C -0.215 4.215 13 C 0.068 3.932 14 C -0.500 4.500 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.827 5.827 18 Si 0.984 3.016 19 H -0.250 1.250 20 H -0.272 1.272 21 H -0.261 1.261 22 C -0.133 4.133 23 C 0.098 3.902 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.287 0.713 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.193 -0.948 -1.639 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.003 3.997 4 C -0.125 4.125 5 C -0.013 4.013 6 N -0.386 5.386 7 C 0.378 3.622 8 O -0.478 6.478 9 C -0.139 4.139 10 C -0.229 4.229 11 C -0.114 4.114 12 C -0.235 4.235 13 C 0.066 3.934 14 C -0.529 4.529 15 H 0.104 0.896 16 C -0.186 4.186 17 N -0.452 5.452 18 Si 0.804 3.196 19 H -0.174 1.174 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.154 4.154 23 C -0.023 4.023 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.460 -0.651 -2.184 18.600 hybrid contribution 1.083 0.551 -0.189 1.230 sum -17.377 -0.100 -2.373 17.539 Atomic orbital electron populations 1.22911 0.79394 1.03666 1.01031 1.87868 1.21458 1.28533 1.95669 1.22393 0.90004 0.84869 1.02480 1.22763 0.94810 0.97606 0.97340 1.23148 0.87331 0.97633 0.93224 1.49412 1.07505 1.44794 1.36864 1.18351 0.80105 0.80636 0.83121 1.90656 1.64113 1.38955 1.54119 1.19724 0.94455 1.02333 0.97378 1.21414 1.00033 1.03120 0.98368 1.20967 0.94272 0.98926 0.97269 1.21434 0.94921 1.03535 1.03622 1.17931 0.94263 0.89806 0.91386 1.19839 0.91912 1.44373 0.96747 0.89592 1.26891 1.05342 0.92517 0.93828 1.69893 1.39534 1.34909 1.00862 0.85228 0.75831 0.79781 0.78762 1.17389 1.19654 1.18525 1.21374 0.92502 1.01030 1.00465 1.23516 0.85372 0.95780 0.97671 0.89039 0.92866 0.93039 0.90727 0.90817 0.87988 0.87037 0.91026 0.83638 0.84212 0.87140 0.90285 0.88784 0.89546 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.24 10.70 -148.98 -1.59 -8.84 16 3 C 0.08 1.10 5.85 71.98 0.42 1.52 16 4 C -0.11 -2.09 4.34 -10.55 -0.05 -2.14 16 5 C 0.11 2.60 8.20 83.17 0.68 3.28 16 6 N -0.65 -22.43 3.68 -862.30 -3.17 -25.61 16 7 C 0.58 27.93 8.01 86.80 0.69 28.62 16 8 O -0.60 -33.35 17.13 -3.87 -0.07 -33.42 16 9 C -0.14 -6.85 5.87 -20.13 -0.12 -6.97 16 10 C -0.21 -8.77 9.17 22.70 0.21 -8.56 16 11 C -0.10 -3.97 10.01 22.18 0.22 -3.75 16 12 C -0.22 -10.36 9.78 22.77 0.22 -10.14 16 13 C 0.07 3.84 5.56 -21.32 -0.12 3.72 16 14 C -0.50 -27.90 9.04 23.47 0.21 -27.68 16 15 H 0.09 4.49 7.91 -2.91 -0.02 4.47 16 16 C 0.03 1.57 5.11 85.25 0.44 2.00 16 17 N -0.83 -47.46 11.06 21.82 0.24 -47.22 16 18 Si 0.98 40.56 29.60 68.60 2.03 42.59 16 19 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 C -0.13 -7.73 8.24 23.01 0.19 -7.55 16 23 C 0.10 2.34 5.89 83.09 0.49 2.83 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 26 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.77 7.81 -2.39 -0.02 0.76 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.11 2.03 8.10 -2.38 -0.02 2.01 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.15 4.79 3.95 -2.91 -0.01 4.78 16 33 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 35 H 0.29 15.18 8.30 -92.71 -0.77 14.41 16 36 H 0.09 6.08 5.84 -2.91 -0.02 6.06 16 37 H 0.09 2.20 6.39 -2.38 -0.02 2.18 16 38 H 0.11 2.08 7.88 -2.39 -0.02 2.06 16 Total: -1.00 -75.38 320.72 3.24 -72.14 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 1.06 Total: 23.62 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.74 Total: -23.27 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -2.93 Total: -72.83 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -1.66 Total: -42.25 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.38 3.24 -72.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603148574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.831 kcal (2) G-P(sol) polarization free energy of solvation -75.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds