Wall clock time and date at job start Mon Mar 30 2020 01:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86797 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47377 * 85.74567 * 3 2 1 5 5 H 1.48505 * 109.47022 * 205.74526 * 3 2 1 6 6 H 1.48503 * 109.47477 * 325.74040 * 3 2 1 7 7 C 1.39019 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00255 * 14.29757 * 7 2 1 9 9 N 1.36912 * 119.99658 * 194.30282 * 7 2 1 10 10 C 1.34777 * 120.00431 * 47.91386 * 9 7 2 11 11 O 1.21605 * 119.99518 * 355.36259 * 10 9 7 12 12 C 1.47607 * 120.00060 * 175.36591 * 10 9 7 13 13 N 1.32253 * 126.68704 * 354.70505 * 12 10 9 14 14 N 1.28838 * 110.14521 * 179.97438 * 13 12 10 15 15 H 0.96996 * 124.97569 * 179.90943 * 14 13 12 16 16 C 1.34335 * 110.05055 * 359.94814 * 14 13 12 17 17 C 1.35569 * 107.22641 * 359.87660 * 16 14 13 18 18 C 1.50377 * 124.62160 * 179.44408 * 17 16 14 19 19 C 1.53480 * 108.34086 * 344.26494 * 18 17 16 20 20 C 1.53108 * 109.50510 * 49.27736 * 19 18 17 21 21 C 1.50717 * 128.89496 * 180.20228 * 16 14 13 22 22 C 1.46507 * 119.99763 * 227.90981 * 9 7 2 23 23 C 1.52996 * 117.49883 * 2.52318 * 22 9 7 24 24 C 1.53001 * 117.50090 * 293.85740 * 22 9 7 25 25 H 0.97000 * 120.00043 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.84075 * 224.45144 * 18 17 16 27 27 H 1.08999 * 109.50785 * 103.88425 * 18 17 16 28 28 H 1.09005 * 109.46392 * 289.26950 * 19 18 17 29 29 H 1.08995 * 109.46585 * 169.29080 * 19 18 17 30 30 H 1.08996 * 109.44051 * 169.88839 * 20 19 18 31 31 H 1.08998 * 109.44080 * 49.99668 * 20 19 18 32 32 H 1.09000 * 109.68945 * 283.01467 * 21 16 14 33 33 H 1.09002 * 109.69089 * 43.59199 * 21 16 14 34 34 H 1.09004 * 115.54650 * 148.18700 * 22 9 7 35 35 H 1.09007 * 117.49887 * 359.97438 * 23 22 9 36 36 H 1.09002 * 117.50376 * 145.02077 * 23 22 9 37 37 H 1.08998 * 117.49735 * 214.97538 * 24 22 9 38 38 H 1.08998 * 117.49604 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4053 2.0984 1.3961 5 1 3.5875 1.4159 -0.6082 6 1 1.4932 2.6251 -0.7882 7 6 2.0089 -1.2039 -0.0005 8 1 1.4940 -2.1247 -0.2319 9 7 3.3462 -1.2224 0.2924 10 6 3.8086 -0.5627 1.3728 11 8 3.0526 0.1177 2.0393 12 6 5.2327 -0.6660 1.7470 13 7 6.1446 -1.4384 1.1805 14 7 7.2845 -1.2764 1.7585 15 1 8.1019 -1.7386 1.5152 16 6 7.1752 -0.3744 2.7479 17 6 5.8850 0.0413 2.7715 18 6 5.3290 1.0467 3.7416 19 6 6.3246 1.2029 4.8991 20 6 7.7310 1.4270 4.3370 21 6 8.2389 0.1336 3.6871 22 6 4.2746 -1.9594 -0.5687 23 6 3.6970 -2.6385 -1.8121 24 6 4.1384 -3.4827 -0.6138 25 1 -0.4850 0.8400 0.0004 26 1 4.3701 0.6988 4.1260 27 1 5.1978 2.0045 3.2380 28 1 6.3170 0.2995 5.5091 29 1 6.0380 2.0573 5.5121 30 1 8.4031 1.7150 5.1453 31 1 7.7011 2.2207 3.5905 32 1 8.4351 -0.6121 4.4575 33 1 9.1537 0.3370 3.1305 34 1 5.2784 -1.5414 -0.6439 35 1 2.6262 -2.5372 -1.9893 36 1 4.3210 -2.6677 -2.7053 37 1 5.0526 -4.0668 -0.7192 38 1 3.3583 -3.9365 -0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604481288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:50 Heat of formation + Delta-G solvation = 76.562448 kcal Electronic energy + Delta-G solvation = -22071.632534 eV Core-core repulsion = 18916.938419 eV Total energy + Delta-G solvation = -3154.694115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43553 -38.72582 -36.81556 -36.19756 -32.92570 -32.26909 -31.31074 -29.71778 -29.32413 -25.47241 -23.64908 -22.88731 -21.97830 -21.59864 -20.90283 -19.25380 -18.79559 -17.41843 -16.84646 -15.98782 -15.71848 -14.87346 -14.56702 -14.24561 -13.82428 -13.69755 -13.41399 -13.37915 -13.11475 -12.91843 -12.55532 -12.36917 -11.98830 -11.41742 -11.01969 -10.89502 -10.80532 -10.75782 -10.56264 -10.31368 -10.24092 -10.03384 -9.72046 -9.52606 -8.85321 -8.55772 -8.43748 -8.28925 -7.34768 -6.14474 -3.96886 2.10994 2.51894 3.13779 3.50432 3.57263 3.72852 4.28731 4.37139 4.60256 4.66361 4.74572 4.83553 4.85929 5.04877 5.26556 5.32018 5.41569 5.47791 5.58136 5.66134 5.68208 5.76392 5.82432 5.88675 6.03290 6.06170 6.25387 6.27051 6.31669 6.45838 6.50006 6.60886 6.79279 6.95184 7.03231 7.33709 7.89020 8.07174 8.30728 8.83941 8.94335 9.45669 9.87794 10.90131 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.007794 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.927664 B = 3591.827168 C = 4655.249014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.091 3.909 3 Si 0.915 3.085 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.309 1.309 7 C -0.341 4.341 8 H 0.096 0.904 9 N -0.423 5.423 10 C 0.532 3.468 11 O -0.534 6.534 12 C 0.024 3.976 13 N -0.267 5.267 14 N -0.390 5.390 15 H 0.437 0.563 16 C -0.003 4.003 17 C -0.151 4.151 18 C -0.043 4.043 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.043 4.043 22 C 0.077 3.923 23 C -0.179 4.179 24 C -0.191 4.191 25 H 0.272 0.728 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.140 -0.353 5.217 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.118 4.118 3 Si 0.746 3.254 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.239 1.239 7 C -0.467 4.467 8 H 0.114 0.886 9 N -0.142 5.142 10 C 0.321 3.679 11 O -0.415 6.415 12 C -0.137 4.137 13 N -0.102 5.102 14 N -0.101 5.101 15 H 0.280 0.720 16 C -0.130 4.130 17 C -0.161 4.161 18 C -0.081 4.081 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.082 4.082 22 C -0.029 4.029 23 C -0.217 4.217 24 C -0.230 4.230 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.643 -0.699 4.707 18.273 hybrid contribution 0.794 0.867 0.242 1.201 sum 18.437 0.169 4.948 19.091 Atomic orbital electron populations 1.69701 1.06733 1.28204 1.45641 1.25374 0.94976 0.99508 0.91921 0.86244 0.78863 0.81873 0.78452 1.17836 1.20745 1.23893 1.18709 0.80882 0.95458 1.51667 0.88637 1.42974 1.06861 1.44642 1.19763 1.17026 0.84043 0.85013 0.81819 1.90604 1.55976 1.41623 1.53301 1.22166 0.95244 0.98391 0.97851 1.74122 0.91358 1.23412 1.21297 1.43061 1.10090 1.32202 1.24767 0.71973 1.21036 0.97452 0.98077 0.96424 1.19880 0.92016 1.03294 1.00912 1.19963 0.98582 0.96620 0.92976 1.21662 0.94325 1.01838 0.97853 1.21550 0.97081 0.96461 1.00083 1.20148 0.94473 0.97727 0.95808 1.22017 0.94519 0.91084 0.95270 1.23202 1.02963 1.04056 0.91451 1.23149 1.02281 0.95020 1.02566 0.91771 0.89402 0.91122 0.91841 0.91471 0.91296 0.91456 0.90347 0.90805 0.85924 0.87145 0.89707 0.89794 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.84 13.95 55.50 0.77 -26.06 16 2 C 0.09 2.75 4.98 -17.45 -0.09 2.66 16 3 Si 0.91 25.26 24.71 -169.99 -4.20 21.06 16 4 H -0.25 -7.17 6.36 56.52 0.36 -6.81 16 5 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.31 -8.28 7.11 56.52 0.40 -7.88 16 7 C -0.34 -9.91 8.30 -14.99 -0.12 -10.03 16 8 H 0.10 2.88 7.57 -52.49 -0.40 2.49 16 9 N -0.42 -11.00 2.41 -108.87 -0.26 -11.26 16 10 C 0.53 13.89 6.02 -12.44 -0.07 13.81 16 11 O -0.53 -15.33 11.27 5.27 0.06 -15.27 16 12 C 0.02 0.52 6.82 -83.00 -0.57 -0.05 16 13 N -0.27 -4.89 8.95 33.27 0.30 -4.59 16 14 N -0.39 -5.37 6.82 33.42 0.23 -5.14 16 15 H 0.44 4.01 8.96 -190.22 -1.71 2.31 16 16 C 0.00 -0.04 7.12 -82.44 -0.59 -0.63 16 17 C -0.15 -2.76 5.99 -104.87 -0.63 -3.39 16 18 C -0.04 -0.73 5.58 -27.79 -0.16 -0.88 16 19 C -0.12 -1.42 5.91 -26.43 -0.16 -1.58 16 20 C -0.11 -1.11 5.88 -26.47 -0.16 -1.26 16 21 C -0.04 -0.41 6.31 -27.67 -0.17 -0.58 16 22 C 0.08 1.65 5.15 -67.93 -0.35 1.30 16 23 C -0.18 -3.44 9.81 -26.69 -0.26 -3.70 16 24 C -0.19 -3.57 10.37 -26.69 -0.28 -3.84 16 25 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 26 H 0.09 1.67 7.59 -51.93 -0.39 1.28 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.12 2.51 5.94 -51.93 -0.31 2.20 16 35 H 0.11 2.36 6.79 -51.93 -0.35 2.00 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 303.47 15.07 4.57 4.57 Total: -1.00 -35.00 303.47 -8.69 -43.69 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.56 Total: 1.18 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.60 Total: -8.17 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 1.04 Total: -47.06 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.06 Total: -15.27 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -4.20 Total: 21.06 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.00 -8.69 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.250 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds