Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86797 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47377 * 85.74567 * 3 2 1 5 5 H 1.48505 * 109.47022 * 205.74526 * 3 2 1 6 6 H 1.48503 * 109.47477 * 325.74040 * 3 2 1 7 7 C 1.39019 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00255 * 14.29757 * 7 2 1 9 9 N 1.36912 * 119.99658 * 194.30282 * 7 2 1 10 10 C 1.34777 * 120.00431 * 47.91386 * 9 7 2 11 11 O 1.21605 * 119.99518 * 355.36259 * 10 9 7 12 12 C 1.47607 * 120.00060 * 175.36591 * 10 9 7 13 13 N 1.32253 * 126.68704 * 354.70505 * 12 10 9 14 14 N 1.28838 * 110.14521 * 179.97438 * 13 12 10 15 15 H 0.96996 * 124.97569 * 179.90943 * 14 13 12 16 16 C 1.34335 * 110.05055 * 359.94814 * 14 13 12 17 17 C 1.35569 * 107.22641 * 359.87660 * 16 14 13 18 18 C 1.50377 * 124.62160 * 179.44408 * 17 16 14 19 19 C 1.53480 * 108.34086 * 344.26494 * 18 17 16 20 20 C 1.53108 * 109.50510 * 49.27736 * 19 18 17 21 21 C 1.50717 * 128.89496 * 180.20228 * 16 14 13 22 22 C 1.46507 * 119.99763 * 227.90981 * 9 7 2 23 23 C 1.52996 * 117.49883 * 2.52318 * 22 9 7 24 24 C 1.53001 * 117.50090 * 293.85740 * 22 9 7 25 25 H 0.97000 * 120.00043 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.84075 * 224.45144 * 18 17 16 27 27 H 1.08999 * 109.50785 * 103.88425 * 18 17 16 28 28 H 1.09005 * 109.46392 * 289.26950 * 19 18 17 29 29 H 1.08995 * 109.46585 * 169.29080 * 19 18 17 30 30 H 1.08996 * 109.44051 * 169.88839 * 20 19 18 31 31 H 1.08998 * 109.44080 * 49.99668 * 20 19 18 32 32 H 1.09000 * 109.68945 * 283.01467 * 21 16 14 33 33 H 1.09002 * 109.69089 * 43.59199 * 21 16 14 34 34 H 1.09004 * 115.54650 * 148.18700 * 22 9 7 35 35 H 1.09007 * 117.49887 * 359.97438 * 23 22 9 36 36 H 1.09002 * 117.50376 * 145.02077 * 23 22 9 37 37 H 1.08998 * 117.49735 * 214.97538 * 24 22 9 38 38 H 1.08998 * 117.49604 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4053 2.0984 1.3961 5 1 3.5875 1.4159 -0.6082 6 1 1.4932 2.6251 -0.7882 7 6 2.0089 -1.2039 -0.0005 8 1 1.4940 -2.1247 -0.2319 9 7 3.3462 -1.2224 0.2924 10 6 3.8086 -0.5627 1.3728 11 8 3.0526 0.1177 2.0393 12 6 5.2327 -0.6660 1.7470 13 7 6.1446 -1.4384 1.1805 14 7 7.2845 -1.2764 1.7585 15 1 8.1019 -1.7386 1.5152 16 6 7.1752 -0.3744 2.7479 17 6 5.8850 0.0413 2.7715 18 6 5.3290 1.0467 3.7416 19 6 6.3246 1.2029 4.8991 20 6 7.7310 1.4270 4.3370 21 6 8.2389 0.1336 3.6871 22 6 4.2746 -1.9594 -0.5687 23 6 3.6970 -2.6385 -1.8121 24 6 4.1384 -3.4827 -0.6138 25 1 -0.4850 0.8400 0.0004 26 1 4.3701 0.6988 4.1260 27 1 5.1978 2.0045 3.2380 28 1 6.3170 0.2995 5.5091 29 1 6.0380 2.0573 5.5121 30 1 8.4031 1.7150 5.1453 31 1 7.7011 2.2207 3.5905 32 1 8.4351 -0.6121 4.4575 33 1 9.1537 0.3370 3.1305 34 1 5.2784 -1.5414 -0.6439 35 1 2.6262 -2.5372 -1.9893 36 1 4.3210 -2.6677 -2.7053 37 1 5.0526 -4.0668 -0.7192 38 1 3.3583 -3.9365 -0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604481288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = 52.060365 kcal Electronic energy + Delta-G solvation = -22072.695024 eV Core-core repulsion = 18916.938419 eV Total energy + Delta-G solvation = -3155.756605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.76064 -40.65768 -38.13815 -37.69225 -35.00974 -33.74908 -33.21711 -30.87052 -30.52797 -27.49164 -24.82771 -24.51701 -23.18778 -22.98409 -22.63607 -21.14483 -19.97911 -18.73653 -18.61794 -17.83090 -17.19789 -16.76233 -16.10194 -15.55334 -15.44913 -15.27407 -15.04558 -14.72254 -14.53713 -14.49822 -14.05170 -13.83658 -13.41098 -13.02525 -12.95371 -12.55227 -12.23372 -12.18953 -11.92027 -11.71668 -11.65425 -11.57506 -11.47560 -11.14053 -10.83918 -10.52869 -10.15739 -9.57665 -9.34335 -8.46216 -6.27616 0.60057 1.11921 1.26208 1.34783 1.46567 2.01799 2.29404 2.52569 2.62745 2.94061 3.23022 3.49175 3.70803 3.89079 4.05343 4.09682 4.22149 4.25886 4.32366 4.39000 4.43653 4.61525 4.68328 4.78513 4.84441 4.98723 5.02901 5.05915 5.15318 5.25030 5.26500 5.35874 5.43644 5.49058 5.56863 5.67169 5.83829 6.25279 6.68766 6.81571 6.99063 7.26297 7.80684 8.62256 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.007794 C = 0.006013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.927664 B = 3591.827168 C = 4655.249014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.048 3.952 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.297 1.297 7 C -0.335 4.335 8 H 0.071 0.929 9 N -0.441 5.441 10 C 0.527 3.473 11 O -0.576 6.576 12 C -0.022 4.022 13 N -0.267 5.267 14 N -0.360 5.360 15 H 0.462 0.538 16 C 0.031 3.969 17 C -0.185 4.185 18 C -0.046 4.046 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.040 4.040 22 C 0.051 3.949 23 C -0.172 4.172 24 C -0.169 4.169 25 H 0.275 0.725 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.331 -0.818 5.692 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.157 4.157 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.226 1.226 7 C -0.462 4.462 8 H 0.089 0.911 9 N -0.161 5.161 10 C 0.317 3.683 11 O -0.459 6.459 12 C -0.180 4.180 13 N -0.104 5.104 14 N -0.075 5.075 15 H 0.311 0.689 16 C -0.098 4.098 17 C -0.195 4.195 18 C -0.084 4.084 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.079 4.079 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.207 4.207 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 22.860 -1.198 5.142 23.462 hybrid contribution -0.676 0.885 0.175 1.128 sum 22.184 -0.313 5.316 22.814 Atomic orbital electron populations 1.69764 1.07634 1.28797 1.48283 1.25941 0.95511 1.01814 0.92401 0.85445 0.78085 0.79748 0.77165 1.20099 1.20540 1.22584 1.18562 0.82833 0.94285 1.50551 0.91132 1.43137 1.06369 1.45652 1.20923 1.17714 0.86081 0.83433 0.81048 1.90551 1.57849 1.43183 1.54351 1.21603 0.93723 1.01934 1.00768 1.73948 0.92167 1.22739 1.21503 1.43166 1.09748 1.31093 1.23487 0.68923 1.21644 0.96944 0.95673 0.95503 1.20163 0.93881 1.04426 1.01063 1.19937 0.98557 0.95290 0.94642 1.21640 0.94674 1.02738 0.95906 1.21590 0.95800 0.96507 1.01052 1.20460 0.93833 0.97938 0.95634 1.22247 0.94343 0.92427 0.96270 1.23250 1.01889 1.03192 0.92606 1.23161 1.03103 0.93309 1.01130 0.91539 0.93373 0.93053 0.91222 0.90272 0.87573 0.92234 0.87550 0.87099 0.84426 0.90150 0.85689 0.85685 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.94 13.95 21.68 0.30 -58.63 16 2 C 0.05 3.03 4.98 84.95 0.42 3.45 16 3 Si 0.97 54.76 24.71 68.60 1.69 56.46 16 4 H -0.27 -16.34 6.36 99.48 0.63 -15.70 16 5 H -0.28 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 7 C -0.34 -20.47 8.30 84.09 0.70 -19.78 16 8 H 0.07 4.55 7.57 -2.91 -0.02 4.53 16 9 N -0.44 -23.68 2.41 -616.60 -1.49 -25.17 16 10 C 0.53 28.54 6.02 86.72 0.52 29.06 16 11 O -0.58 -35.05 11.27 -4.05 -0.05 -35.10 16 12 C -0.02 -0.96 6.82 42.12 0.29 -0.68 16 13 N -0.27 -9.16 8.95 -48.65 -0.44 -9.60 16 14 N -0.36 -8.38 6.82 -48.17 -0.33 -8.71 16 15 H 0.46 5.86 8.96 -219.81 -1.97 3.89 16 16 C 0.03 0.75 7.12 41.56 0.30 1.05 16 17 C -0.19 -6.62 5.99 -20.02 -0.12 -6.74 16 18 C -0.05 -1.58 5.58 29.91 0.17 -1.41 16 19 C -0.11 -2.42 5.91 30.79 0.18 -2.24 16 20 C -0.11 -1.64 5.88 30.76 0.18 -1.46 16 21 C -0.04 -0.52 6.31 29.99 0.19 -0.33 16 22 C 0.05 2.18 5.15 44.99 0.23 2.41 16 23 C -0.17 -6.42 9.81 30.62 0.30 -6.12 16 24 C -0.17 -6.03 10.37 30.62 0.32 -5.71 16 25 H 0.28 16.78 8.31 -92.71 -0.77 16.01 16 26 H 0.05 1.98 7.59 -2.39 -0.02 1.96 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.42 8.12 -2.38 -0.02 1.40 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.14 5.39 5.94 -2.39 -0.01 5.38 16 35 H 0.08 3.52 6.79 -2.38 -0.02 3.50 16 36 H 0.13 3.63 8.14 -2.39 -0.02 3.62 16 37 H 0.13 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -84.06 303.47 2.42 -81.64 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -0.96 Total: 7.62 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 3.67 Total: -8.50 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -1.95 Total: -102.11 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.05 Total: -35.10 kcal Atomic # 14 Polarization: 54.76 SS G_CDS: 1.69 Total: 56.46 kcal Total: -84.06 2.42 -81.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604481288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.702 kcal (2) G-P(sol) polarization free energy of solvation -84.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds