Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34708 * 116.99968 * 2 1 4 4 O 1.21477 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.47730 * 120.00196 * 179.97438 * 3 2 1 6 6 C 1.39642 * 120.15563 * 359.97438 * 5 3 2 7 7 C 1.37907 * 119.84967 * 180.02562 * 6 5 3 8 8 C 1.38362 * 120.22621 * 359.97438 * 7 6 5 9 9 C 1.38608 * 120.20786 * 359.97438 * 8 7 6 10 10 C 1.37894 * 120.12102 * 0.02562 * 9 8 7 11 11 C 1.51212 * 108.23681 * 180.02562 * 9 8 7 12 12 N 1.48045 * 105.67243 * 342.46207 * 11 9 8 13 13 C 1.46897 * 111.00021 * 147.05143 * 12 11 9 14 14 C 1.53002 * 109.47213 * 59.76571 * 13 12 11 15 15 C 1.50700 * 109.46929 * 174.76215 * 14 13 12 16 16 H 1.07999 * 120.00404 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99490 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00384 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99879 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46785 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47027 * 119.99989 * 19 17 15 22 22 H 1.48498 * 109.47135 * 240.00092 * 19 17 15 23 23 C 1.48038 * 103.91215 * 27.67344 * 12 11 9 24 24 H 1.09003 * 109.47110 * 299.99662 * 1 2 3 25 25 H 1.08990 * 109.47021 * 59.99924 * 1 2 3 26 26 H 1.08998 * 109.47138 * 180.02562 * 1 2 3 27 27 H 1.08008 * 120.07656 * 0.03842 * 6 5 3 28 28 H 1.07999 * 119.88857 * 180.02562 * 7 6 5 29 29 H 1.08001 * 120.05092 * 180.02562 * 10 9 8 30 30 H 1.08997 * 110.20601 * 223.41570 * 11 9 8 31 31 H 1.08995 * 110.21020 * 101.50992 * 11 9 8 32 32 H 1.08998 * 109.46934 * 179.76427 * 13 12 11 33 33 H 1.08998 * 109.47446 * 299.76311 * 13 12 11 34 34 H 1.09001 * 109.46941 * 294.76104 * 14 13 12 35 35 H 1.08995 * 109.47080 * 54.76014 * 14 13 12 36 36 H 0.97000 * 120.00316 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.20161 * 91.37503 * 23 12 11 38 38 H 1.09001 * 110.21006 * 213.26916 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3027 0.1086 0.0017 7 6 5.6794 0.1882 0.0027 8 6 6.3058 1.4219 0.0022 9 6 5.5534 2.5860 0.0000 10 6 4.1761 2.5198 -0.0010 11 6 6.5028 3.7630 -0.0007 12 7 7.8114 3.2215 0.4306 13 6 8.9173 3.9354 -0.2215 14 6 8.8512 5.4200 0.1426 15 6 10.0560 6.1292 -0.4198 16 1 10.7953 5.5764 -0.9804 17 6 10.2146 7.4840 -0.2185 18 7 9.3143 8.1573 0.4638 19 14 11.7078 8.3635 -0.9162 20 1 12.5632 7.3886 -1.6394 21 1 11.2633 9.4240 -1.8559 22 1 12.4834 8.9770 0.1916 23 6 7.7689 1.8049 0.0030 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.8162 -0.8558 0.0014 28 1 6.2707 -0.7156 0.0031 29 1 3.5910 3.4275 -0.0031 30 1 6.1602 4.5234 0.7011 31 1 6.5812 4.1829 -1.0034 32 1 9.8669 3.5204 0.1163 33 1 8.8354 3.8224 -1.3025 34 1 7.9443 5.8567 -0.2758 35 1 8.8394 5.5279 1.2271 36 1 9.4260 9.1104 0.6057 37 1 8.1857 1.7015 -0.9989 38 1 8.3208 1.1823 0.7071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609313644.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -70.906574 kcal Electronic energy + Delta-G solvation = -20106.239792 eV Core-core repulsion = 16912.858189 eV Total energy + Delta-G solvation = -3193.381603 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87571 -41.03730 -38.25999 -37.49943 -35.40612 -33.33932 -32.63437 -30.86146 -28.88036 -28.53082 -26.90527 -24.98099 -23.42751 -22.75465 -21.94684 -21.34748 -18.90419 -18.45912 -18.11987 -17.43962 -17.00096 -16.79750 -16.43714 -16.32233 -15.39475 -15.20637 -14.95405 -14.59715 -14.41632 -14.30192 -14.19329 -13.73669 -13.43365 -13.29515 -13.04047 -12.96738 -12.78444 -12.65566 -12.38834 -11.94250 -11.91650 -11.85312 -11.71552 -11.37951 -11.26801 -10.58399 -10.12485 -10.00198 -9.26230 -8.20912 -6.32482 -0.45264 0.25417 1.37907 1.40831 1.41063 1.54381 1.58779 2.39898 2.63016 3.02748 3.13078 3.28909 3.42408 3.68084 3.89946 4.18689 4.23551 4.28911 4.33156 4.33246 4.45452 4.48394 4.55153 4.61530 4.70917 4.76563 4.79552 4.91863 5.01530 5.09346 5.17278 5.28079 5.40452 5.44603 5.55398 5.73946 5.76452 5.85261 6.05151 6.25283 6.59715 6.84872 7.37064 8.91525 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036456 B = 0.003077 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.854347 B = 9098.228693 C = 9741.460463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.515 3.485 4 O -0.540 6.540 5 C -0.142 4.142 6 C -0.045 4.045 7 C -0.104 4.104 8 C -0.062 4.062 9 C -0.125 4.125 10 C -0.048 4.048 11 C 0.081 3.919 12 N -0.519 5.519 13 C 0.069 3.931 14 C 0.032 3.968 15 C -0.542 4.542 16 H 0.065 0.935 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.067 3.933 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.172 0.828 29 H 0.125 0.875 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.032 0.968 34 H -0.008 1.008 35 H -0.006 1.006 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 -22.014 -2.273 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.362 3.638 4 O -0.432 6.432 5 C -0.144 4.144 6 C -0.063 4.063 7 C -0.121 4.121 8 C -0.063 4.063 9 C -0.126 4.126 10 C -0.067 4.067 11 C -0.047 4.047 12 N -0.243 5.243 13 C -0.058 4.058 14 C -0.006 4.006 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.792 3.208 20 H -0.183 1.183 21 H -0.206 1.206 22 H -0.204 1.204 23 C -0.059 4.059 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.158 0.842 27 H 0.190 0.810 28 H 0.189 0.811 29 H 0.143 0.857 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.010 0.990 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.883 -21.513 -1.638 25.129 hybrid contribution 0.135 1.480 -0.962 1.770 sum -12.747 -20.033 -2.600 23.887 Atomic orbital electron populations 1.23626 0.74120 1.06131 1.02579 1.86516 1.25302 1.31045 1.83775 1.21263 0.89175 0.81625 0.71785 1.90832 1.67498 1.37283 1.47567 1.18968 0.88984 0.95003 1.11412 1.21680 0.93293 0.98144 0.93190 1.20849 0.94165 0.96922 1.00208 1.21190 0.95950 0.93972 0.95198 1.20498 0.93303 0.96380 1.02422 1.20480 0.92755 0.97518 0.95931 1.21480 0.88476 0.95173 0.99575 1.65313 1.01946 1.02628 1.54368 1.22275 0.93296 0.95026 0.95242 1.18951 0.95558 0.90715 0.95337 1.21646 1.07983 0.94077 1.34339 0.91715 1.25995 0.99711 0.98674 0.95499 1.70118 1.36837 1.08643 1.41711 0.85361 0.78897 0.78397 0.78148 1.18258 1.20553 1.20432 1.21888 0.92438 0.90061 1.01546 0.92024 0.91975 0.84230 0.80974 0.81094 0.85691 0.91023 0.92834 0.90402 0.94972 0.98971 0.98801 0.92791 0.90547 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.48 9.82 -56.17 -0.55 -7.03 16 3 C 0.51 12.77 7.90 70.33 0.56 13.32 16 4 O -0.54 -16.79 16.14 19.91 0.32 -16.47 16 5 C -0.14 -3.44 5.87 -20.10 -0.12 -3.55 16 6 C -0.05 -0.80 9.62 22.53 0.22 -0.58 16 7 C -0.10 -1.81 10.03 22.22 0.22 -1.59 16 8 C -0.06 -1.55 6.27 -19.57 -0.12 -1.67 16 9 C -0.13 -3.77 6.25 -19.69 -0.12 -3.89 16 10 C -0.05 -1.38 9.59 22.52 0.22 -1.16 16 11 C 0.08 2.92 5.38 85.50 0.46 3.38 16 12 N -0.52 -18.84 5.55 -897.03 -4.98 -23.82 16 13 C 0.07 2.85 4.68 86.30 0.40 3.25 16 14 C 0.03 1.70 4.76 29.85 0.14 1.84 16 15 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 16 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 18 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 19 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.07 1.78 6.61 85.51 0.57 2.35 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.17 1.91 7.61 -2.91 -0.02 1.89 16 28 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 29 H 0.13 3.76 7.65 -2.91 -0.02 3.74 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.05 2.03 7.61 -2.39 -0.02 2.01 16 32 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.03 1.27 7.91 -2.39 -0.02 1.25 16 34 H -0.01 -0.46 7.26 -2.39 -0.02 -0.48 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.08 1.86 7.69 -2.39 -0.02 1.84 16 38 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -71.54 324.55 2.47 -69.08 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.05 Total: 6.01 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 4.31 Total: -16.86 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -4.69 Total: -81.01 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.23 Total: -23.50 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.54 2.47 -69.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609313644.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.831 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds