Wall clock time and date at job start Mon Mar 30 2020 02:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47036 * 120.06628 * 3 2 1 5 5 N 1.46901 * 109.47444 * 179.46183 * 4 3 2 6 6 C 1.46903 * 111.00132 * 297.54068 * 5 4 3 7 7 C 1.50698 * 109.47175 * 292.83632 * 6 5 4 8 8 H 1.08006 * 119.99819 * 354.98514 * 7 6 5 9 9 C 1.37875 * 119.99936 * 174.98667 * 7 6 5 10 10 N 1.31511 * 120.00416 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99762 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47120 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47346 * 119.99816 * 11 9 7 14 14 H 1.48497 * 109.47120 * 240.00199 * 11 9 7 15 15 C 1.46899 * 110.99797 * 61.49184 * 5 4 3 16 16 C 1.53004 * 109.47260 * 66.04697 * 15 5 4 17 17 N 1.46492 * 109.47304 * 180.02562 * 16 15 5 18 18 C 1.35766 * 119.62572 * 90.00014 * 17 16 15 19 19 C 1.35346 * 120.70102 * 180.27627 * 18 17 16 20 20 C 1.40201 * 119.95137 * 359.43687 * 19 18 17 21 21 C 1.36400 * 119.25995 * 0.57586 * 20 19 18 22 22 C 1.34663 * 119.62334 * 270.02522 * 17 16 15 23 23 O 1.22063 * 119.99023 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47091 * 0.06941 * 3 2 1 25 25 H 1.08999 * 109.47120 * 240.06586 * 3 2 1 26 26 H 1.09002 * 109.47442 * 59.46468 * 4 3 2 27 27 H 1.08996 * 109.47613 * 299.46658 * 4 3 2 28 28 H 1.09004 * 109.47165 * 52.83050 * 6 5 4 29 29 H 1.08996 * 109.47490 * 172.83265 * 6 5 4 30 30 H 0.97001 * 120.00241 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47302 * 306.04805 * 15 5 4 32 32 H 1.08997 * 109.47483 * 186.05014 * 15 5 4 33 33 H 1.08999 * 109.46875 * 59.99847 * 16 15 5 34 34 H 1.08997 * 109.47131 * 300.00532 * 16 15 5 35 35 H 1.07995 * 119.64822 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.02277 * 179.70390 * 19 18 17 37 37 H 1.07998 * 120.37213 * 180.32188 * 20 19 18 38 38 H 1.08007 * 120.34718 * 179.73760 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7236 -1.2484 5 7 4.5866 0.7356 -1.2420 6 6 5.1020 1.4782 -0.0840 7 6 4.7559 2.9377 -0.2287 8 1 4.2800 3.2930 -1.1308 9 6 5.0470 3.8195 0.7905 10 7 5.6261 3.3869 1.8891 11 14 4.6187 5.6288 0.6108 12 1 3.9780 5.8571 -0.7094 13 1 3.6799 6.0250 1.6911 14 1 5.8570 6.4427 0.7079 15 6 5.1243 -0.6311 -1.2727 16 6 4.7715 -1.2882 -2.6087 17 7 5.3071 -2.6513 -2.6390 18 6 4.5466 -3.6815 -2.1878 19 6 5.0219 -4.9487 -2.2007 20 6 6.3079 -5.2090 -2.6947 21 6 7.0706 -4.1726 -3.1472 22 6 6.5485 -2.8683 -3.1137 23 8 7.2202 -1.9318 -3.5160 24 1 2.9718 -1.0268 -0.0012 25 1 2.9711 0.5136 0.8906 26 1 2.7460 1.7483 -1.2521 27 1 2.7624 0.2052 -2.1390 28 1 4.6517 1.0868 0.8283 29 1 6.1848 1.3649 -0.0323 30 1 5.8312 4.0073 2.6059 31 1 4.6911 -1.2104 -0.4573 32 1 6.2078 -0.5980 -1.1590 33 1 5.2047 -0.7089 -3.4240 34 1 3.6879 -1.3213 -2.7223 35 1 3.5534 -3.4872 -1.8108 36 1 4.4093 -5.7593 -1.8346 37 1 6.6919 -6.2182 -2.7130 38 1 8.0653 -4.3526 -3.5276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610079711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:44 Heat of formation + Delta-G solvation = 34.413651 kcal Electronic energy + Delta-G solvation = -20761.099459 eV Core-core repulsion = 17604.577635 eV Total energy + Delta-G solvation = -3156.521824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33695 -38.14016 -36.85905 -36.13947 -34.68319 -32.72406 -30.82305 -29.96163 -29.19920 -26.39995 -24.72441 -23.96945 -23.17325 -21.83437 -19.84510 -17.72912 -17.50305 -17.22365 -16.45016 -16.36238 -15.63965 -15.37558 -14.78580 -14.71028 -14.41436 -14.15931 -13.81232 -13.46809 -13.11707 -12.88290 -12.44769 -12.29391 -12.16812 -12.07851 -11.83754 -11.73723 -11.59988 -11.19296 -10.96103 -10.79382 -10.70502 -10.31045 -10.22412 -9.88851 -9.86081 -9.32672 -8.53301 -8.02562 -7.53433 -6.12466 -4.14355 0.75273 1.81654 2.61833 2.97339 3.00076 3.27183 3.35825 3.39761 3.62493 4.18902 4.35501 4.44133 4.58725 4.78033 4.82027 5.06117 5.12541 5.17233 5.24189 5.25209 5.29347 5.39968 5.53355 5.69678 5.85274 5.95588 6.01055 6.10279 6.16090 6.19489 6.46845 6.47380 7.04582 7.09341 7.12177 7.65462 7.75117 7.87870 7.97648 8.07388 8.34243 8.93558 9.51213 10.97932 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.004654 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.339615 B = 6014.914834 C = 7126.207062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.075 4.075 4 C 0.067 3.933 5 N -0.522 5.522 6 C 0.187 3.813 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.058 3.942 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.271 1.271 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.038 3.962 16 C 0.089 3.911 17 N -0.491 5.491 18 C 0.140 3.860 19 C -0.243 4.243 20 C -0.019 4.019 21 C -0.246 4.246 22 C 0.509 3.491 23 O -0.543 6.543 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.006 0.994 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 -17.209 -6.224 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.095 4.095 3 C -0.116 4.116 4 C -0.064 4.064 5 N -0.244 5.244 6 C 0.063 3.937 7 C -0.549 4.549 8 H 0.084 0.916 9 C -0.143 4.143 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.091 4.091 16 C -0.033 4.033 17 N -0.202 5.202 18 C 0.011 3.989 19 C -0.266 4.266 20 C -0.041 4.041 21 C -0.268 4.268 22 C 0.311 3.689 23 O -0.425 6.425 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.149 0.851 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.042 -16.215 -6.752 17.825 hybrid contribution 0.003 0.436 0.971 1.064 sum -3.039 -15.779 -5.781 17.077 Atomic orbital electron populations 1.81161 1.13145 1.09645 1.09640 1.29250 0.95227 0.92477 0.92529 1.20241 0.81589 1.03994 1.05813 1.22166 0.89235 1.01904 0.93049 1.62327 1.04772 1.10630 1.46717 1.19887 0.95773 0.93052 0.84989 1.21149 1.39666 0.91941 1.02168 0.91573 1.24955 0.95180 0.99057 0.95149 1.69945 1.42138 1.35133 1.06355 0.86477 0.78128 0.84926 0.78147 1.19568 1.21133 1.20960 1.22387 1.01764 0.91111 0.93843 1.22166 0.99366 0.79881 1.01849 1.45651 1.15116 1.09092 1.50309 1.21999 0.96534 0.87608 0.92735 1.20603 0.98463 0.95986 1.11586 1.21397 0.92829 0.99396 0.90498 1.22148 1.02945 0.91634 1.10057 1.17193 0.80632 0.91131 0.79986 1.91009 1.57152 1.44951 1.49357 0.88490 0.85853 0.88522 0.91788 0.97626 0.95033 0.92850 0.94757 0.90105 0.87162 0.89268 0.82336 0.84049 0.85127 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.68 18.54 42.15 0.78 -6.90 16 2 C 0.22 3.24 15.43 -20.76 -0.32 2.92 16 3 C -0.07 -0.99 5.05 -29.52 -0.15 -1.13 16 4 C 0.07 1.00 4.91 -3.82 -0.02 0.98 16 5 N -0.52 -9.27 4.69 -236.07 -1.11 -10.38 16 6 C 0.19 4.24 4.54 -4.98 -0.02 4.22 16 7 C -0.51 -13.05 8.39 -34.44 -0.29 -13.34 16 8 H 0.07 1.69 7.38 -52.48 -0.39 1.30 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.02 13.29 55.43 0.74 -24.28 16 11 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.04 0.57 5.06 -3.82 -0.02 0.55 16 16 C 0.09 1.11 5.26 -4.04 -0.02 1.08 16 17 N -0.49 -5.79 2.58 -119.78 -0.31 -6.10 16 18 C 0.14 1.15 10.28 -16.84 -0.17 0.98 16 19 C -0.24 -1.77 10.01 -39.88 -0.40 -2.17 16 20 C -0.02 -0.16 10.10 -39.51 -0.40 -0.56 16 21 C -0.25 -2.77 9.99 -39.38 -0.39 -3.16 16 22 C 0.51 7.38 7.41 -15.44 -0.11 7.26 16 23 O -0.54 -10.27 16.64 4.86 0.08 -10.19 16 24 H 0.10 1.01 6.34 -51.93 -0.33 0.68 16 25 H 0.12 1.91 6.28 -51.93 -0.33 1.59 16 26 H 0.10 1.67 6.98 -51.93 -0.36 1.31 16 27 H 0.06 0.78 6.40 -51.93 -0.33 0.45 16 28 H 0.01 0.14 6.02 -51.93 -0.31 -0.17 16 29 H 0.03 0.80 7.91 -51.93 -0.41 0.39 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.45 6.06 -51.93 -0.31 0.13 16 32 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 33 H 0.11 1.64 7.39 -51.93 -0.38 1.25 16 34 H 0.09 0.86 6.39 -51.93 -0.33 0.53 16 35 H 0.16 0.82 8.04 -52.49 -0.42 0.40 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -32.17 324.07 -7.10 -39.27 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.73 Total: -1.15 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.42 Total: -0.91 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.10 Total: -47.66 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.17 -7.10 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.686 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds