Wall clock time and date at job start Mon Mar 30 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47036 * 120.06628 * 3 2 1 5 5 N 1.46901 * 109.47444 * 179.46183 * 4 3 2 6 6 C 1.46903 * 111.00132 * 297.54068 * 5 4 3 7 7 C 1.50698 * 109.47175 * 292.83632 * 6 5 4 8 8 H 1.08006 * 119.99819 * 354.98514 * 7 6 5 9 9 C 1.37875 * 119.99936 * 174.98667 * 7 6 5 10 10 N 1.31511 * 120.00416 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99762 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47120 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47346 * 119.99816 * 11 9 7 14 14 H 1.48497 * 109.47120 * 240.00199 * 11 9 7 15 15 C 1.46899 * 110.99797 * 61.49184 * 5 4 3 16 16 C 1.53004 * 109.47260 * 66.04697 * 15 5 4 17 17 N 1.46492 * 109.47304 * 180.02562 * 16 15 5 18 18 C 1.35766 * 119.62572 * 90.00014 * 17 16 15 19 19 C 1.35346 * 120.70102 * 180.27627 * 18 17 16 20 20 C 1.40201 * 119.95137 * 359.43687 * 19 18 17 21 21 C 1.36400 * 119.25995 * 0.57586 * 20 19 18 22 22 C 1.34663 * 119.62334 * 270.02522 * 17 16 15 23 23 O 1.22063 * 119.99023 * 359.97438 * 22 17 16 24 24 H 1.09000 * 109.47091 * 0.06941 * 3 2 1 25 25 H 1.08999 * 109.47120 * 240.06586 * 3 2 1 26 26 H 1.09002 * 109.47442 * 59.46468 * 4 3 2 27 27 H 1.08996 * 109.47613 * 299.46658 * 4 3 2 28 28 H 1.09004 * 109.47165 * 52.83050 * 6 5 4 29 29 H 1.08996 * 109.47490 * 172.83265 * 6 5 4 30 30 H 0.97001 * 120.00241 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.47302 * 306.04805 * 15 5 4 32 32 H 1.08997 * 109.47483 * 186.05014 * 15 5 4 33 33 H 1.08999 * 109.46875 * 59.99847 * 16 15 5 34 34 H 1.08997 * 109.47131 * 300.00532 * 16 15 5 35 35 H 1.07995 * 119.64822 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.02277 * 179.70390 * 19 18 17 37 37 H 1.07998 * 120.37213 * 180.32188 * 20 19 18 38 38 H 1.08007 * 120.34718 * 179.73760 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7236 -1.2484 5 7 4.5866 0.7356 -1.2420 6 6 5.1020 1.4782 -0.0840 7 6 4.7559 2.9377 -0.2287 8 1 4.2800 3.2930 -1.1308 9 6 5.0470 3.8195 0.7905 10 7 5.6261 3.3869 1.8891 11 14 4.6187 5.6288 0.6108 12 1 3.9780 5.8571 -0.7094 13 1 3.6799 6.0250 1.6911 14 1 5.8570 6.4427 0.7079 15 6 5.1243 -0.6311 -1.2727 16 6 4.7715 -1.2882 -2.6087 17 7 5.3071 -2.6513 -2.6390 18 6 4.5466 -3.6815 -2.1878 19 6 5.0219 -4.9487 -2.2007 20 6 6.3079 -5.2090 -2.6947 21 6 7.0706 -4.1726 -3.1472 22 6 6.5485 -2.8683 -3.1137 23 8 7.2202 -1.9318 -3.5160 24 1 2.9718 -1.0268 -0.0012 25 1 2.9711 0.5136 0.8906 26 1 2.7460 1.7483 -1.2521 27 1 2.7624 0.2052 -2.1390 28 1 4.6517 1.0868 0.8283 29 1 6.1848 1.3649 -0.0323 30 1 5.8312 4.0073 2.6059 31 1 4.6911 -1.2104 -0.4573 32 1 6.2078 -0.5980 -1.1590 33 1 5.2047 -0.7089 -3.4240 34 1 3.6879 -1.3213 -2.7223 35 1 3.5534 -3.4872 -1.8108 36 1 4.4093 -5.7593 -1.8346 37 1 6.6919 -6.2182 -2.7130 38 1 8.0653 -4.3526 -3.5276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610079711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:43 Heat of formation + Delta-G solvation = 12.767762 kcal Electronic energy + Delta-G solvation = -20762.038095 eV Core-core repulsion = 17604.577635 eV Total energy + Delta-G solvation = -3157.460460 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23843 -39.47177 -37.86953 -37.37558 -35.66323 -34.61990 -31.99187 -30.91934 -30.48183 -27.99226 -25.92114 -25.02786 -24.34224 -22.98893 -21.21530 -18.91116 -18.41790 -18.27023 -18.11547 -17.30100 -16.74163 -16.70538 -16.22286 -15.91280 -15.56359 -15.10309 -15.04632 -14.71722 -14.42736 -14.23486 -13.85238 -13.52893 -13.22657 -13.13874 -12.99968 -12.90827 -12.74419 -12.67966 -12.54127 -12.36890 -12.21107 -11.93257 -11.39943 -11.33484 -10.93295 -10.86606 -10.56535 -9.00912 -8.85498 -8.16370 -6.23534 0.02336 1.02368 1.41667 1.45103 1.55479 1.72329 1.80215 1.83676 2.43130 2.77977 3.00264 3.18334 3.41703 3.74246 3.92345 4.00807 4.06649 4.17697 4.21158 4.30898 4.38032 4.43503 4.57232 4.63794 4.79230 4.87099 4.99254 5.17156 5.19144 5.29464 5.36577 5.39348 5.48237 5.71107 5.77298 6.10096 6.21451 6.30746 6.58049 6.65108 6.93030 7.11006 7.45870 8.93774 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.004654 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.339615 B = 6014.914834 C = 7126.207062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.247 3.753 3 C -0.062 4.062 4 C 0.068 3.932 5 N -0.534 5.534 6 C 0.202 3.798 7 C -0.516 4.516 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.930 5.930 11 Si 0.953 3.047 12 H -0.265 1.265 13 H -0.281 1.281 14 H -0.285 1.285 15 C 0.046 3.954 16 C 0.099 3.901 17 N -0.491 5.491 18 C 0.130 3.870 19 C -0.232 4.232 20 C 0.007 3.993 21 C -0.285 4.285 22 C 0.488 3.512 23 O -0.614 6.614 24 H 0.138 0.862 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.003 0.997 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.202 0.798 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -19.773 -6.223 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.070 4.070 3 C -0.103 4.103 4 C -0.062 4.062 5 N -0.257 5.257 6 C 0.076 3.924 7 C -0.555 4.555 8 H 0.081 0.919 9 C -0.189 4.189 10 N -0.571 5.571 11 Si 0.780 3.220 12 H -0.189 1.189 13 H -0.207 1.207 14 H -0.211 1.211 15 C -0.083 4.083 16 C -0.023 4.023 17 N -0.200 5.200 18 C 0.004 3.996 19 C -0.254 4.254 20 C -0.015 4.015 21 C -0.307 4.307 22 C 0.294 3.706 23 O -0.502 6.502 24 H 0.155 0.845 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.020 0.980 29 H 0.011 0.989 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.219 0.781 36 H 0.200 0.800 37 H 0.184 0.816 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.491 -18.827 -6.752 20.741 hybrid contribution 0.712 1.081 0.976 1.621 sum -4.778 -17.746 -5.776 19.265 Atomic orbital electron populations 1.81199 1.14213 1.11017 1.10692 1.29253 0.95043 0.91266 0.91448 1.20151 0.80649 1.05769 1.03753 1.22169 0.87054 1.01431 0.95538 1.62099 1.06785 1.12352 1.44466 1.19494 0.93513 0.92637 0.86763 1.21487 1.38669 0.93602 1.01700 0.91882 1.25696 0.95338 1.02856 0.95056 1.70046 1.43564 1.36360 1.07125 0.85564 0.77730 0.80441 0.78297 1.18900 1.20697 1.21122 1.22287 0.99489 0.90046 0.96444 1.21984 1.01242 0.80127 0.98947 1.45582 1.14703 1.09648 1.50062 1.22811 0.97749 0.87014 0.92040 1.21187 0.98047 0.96702 1.09476 1.21865 0.92599 0.99987 0.87025 1.22099 1.03916 0.91254 1.13414 1.17749 0.81275 0.91652 0.79970 1.90957 1.59183 1.46886 1.53170 0.84454 0.88047 0.91107 0.87985 0.97962 0.98900 0.92886 0.91884 0.94039 0.90293 0.85119 0.78128 0.79974 0.81575 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.38 18.54 20.01 0.37 -15.01 16 2 C 0.25 6.49 15.43 89.44 1.38 7.87 16 3 C -0.06 -1.45 5.05 28.79 0.15 -1.31 16 4 C 0.07 1.89 4.91 86.30 0.42 2.31 16 5 N -0.53 -18.92 4.69 -900.79 -4.23 -23.15 16 6 C 0.20 9.40 4.54 85.56 0.39 9.79 16 7 C -0.52 -26.89 8.39 25.60 0.21 -26.67 16 8 H 0.06 3.26 7.38 -2.91 -0.02 3.24 16 9 C 0.01 0.48 5.46 84.65 0.46 0.94 16 10 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 11 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 12 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 15 C 0.05 1.35 5.06 86.30 0.44 1.78 16 16 C 0.10 2.32 5.26 86.38 0.45 2.77 16 17 N -0.49 -10.76 2.58 -650.99 -1.68 -12.44 16 18 C 0.13 1.54 10.28 83.42 0.86 2.40 16 19 C -0.23 -2.14 10.01 22.08 0.22 -1.92 16 20 C 0.01 0.09 10.10 22.32 0.23 0.31 16 21 C -0.29 -6.35 9.99 22.40 0.22 -6.12 16 22 C 0.49 14.59 7.41 84.82 0.63 15.22 16 23 O -0.61 -25.27 16.64 -5.52 -0.09 -25.37 16 24 H 0.14 2.15 6.34 -2.39 -0.02 2.13 16 25 H 0.10 3.00 6.28 -2.39 -0.02 2.98 16 26 H 0.07 2.38 6.98 -2.39 -0.02 2.36 16 27 H 0.10 2.09 6.40 -2.39 -0.02 2.07 16 28 H 0.00 0.13 6.02 -2.39 -0.01 0.11 16 29 H -0.01 -0.38 7.91 -2.39 -0.02 -0.40 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.06 1.46 6.06 -2.39 -0.01 1.44 16 32 H 0.04 1.54 7.92 -2.39 -0.02 1.52 16 33 H 0.08 2.41 7.39 -2.39 -0.02 2.39 16 34 H 0.13 1.94 6.39 -2.39 -0.02 1.93 16 35 H 0.20 0.65 8.04 -2.91 -0.02 0.62 16 36 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 37 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -76.72 324.07 3.81 -72.90 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.07 Total: 3.38 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.06 Total: 7.37 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -5.26 Total: -103.37 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.09 Total: -25.37 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -76.72 3.81 -72.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.669 kcal (2) G-P(sol) polarization free energy of solvation -76.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds