Wall clock time and date at job start Mon Mar 30 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36549 * 125.98583 * 117.45683 * 3 2 1 5 5 C 1.40478 * 106.70352 * 179.97438 * 4 3 2 6 6 C 1.35044 * 107.11465 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.61979 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46953 * 90.00310 * 7 6 5 9 9 C 1.46898 * 111.00140 * 179.97438 * 8 7 6 10 10 C 1.53043 * 109.46157 * 275.06646 * 9 8 7 11 11 C 1.53195 * 109.31039 * 178.61313 * 10 9 8 12 12 N 1.46921 * 108.77690 * 54.63773 * 11 10 9 13 13 C 1.36932 * 120.62837 * 126.40882 * 12 11 10 14 14 H 1.08004 * 120.00463 * 332.60720 * 13 12 11 15 15 C 1.38820 * 119.99942 * 152.60955 * 13 12 11 16 16 N 1.31618 * 119.99974 * 159.34568 * 15 13 12 17 17 Si 1.86801 * 119.99650 * 339.34669 * 15 13 12 18 18 H 1.48499 * 109.47244 * 92.94416 * 17 15 13 19 19 H 1.48504 * 109.46764 * 212.93853 * 17 15 13 20 20 H 1.48498 * 109.47287 * 332.93842 * 17 15 13 21 21 C 1.46923 * 118.73738 * 306.39117 * 12 11 10 22 22 C 1.53043 * 109.45866 * 155.00031 * 9 8 7 23 23 O 1.34058 * 108.76423 * 0.02562 * 6 5 4 24 24 H 1.08001 * 126.64838 * 0.23547 * 4 3 2 25 25 H 1.08004 * 126.44399 * 180.02562 * 5 4 3 26 26 H 1.09003 * 109.47384 * 210.00169 * 7 6 5 27 27 H 1.09004 * 109.47560 * 330.00690 * 7 6 5 28 28 H 1.00900 * 111.00120 * 303.95563 * 8 7 6 29 29 H 1.08997 * 109.46127 * 35.02787 * 9 8 7 30 30 H 1.08992 * 109.49727 * 298.57045 * 10 9 8 31 31 H 1.09003 * 109.49280 * 58.66258 * 10 9 8 32 32 H 1.08999 * 109.58691 * 294.84851 * 11 10 9 33 33 H 1.09006 * 109.69981 * 174.49382 * 11 10 9 34 34 H 0.97000 * 119.99831 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.58508 * 293.81650 * 21 12 11 36 36 H 1.09007 * 109.70000 * 173.46588 * 21 12 11 37 37 H 1.08994 * 109.49877 * 301.33422 * 22 9 8 38 38 H 1.08999 * 109.49947 * 61.43811 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3701 0.5104 -0.9804 5 6 4.6962 0.2977 -0.5685 6 6 4.6454 -0.3237 0.6294 7 6 5.8365 -0.7477 1.4494 8 7 6.2220 0.3440 2.3536 9 6 7.3822 -0.0344 3.1712 10 6 6.9069 -0.8035 4.4060 11 6 8.1216 -1.2265 5.2381 12 7 8.9249 -0.0344 5.5420 13 6 9.2634 0.2679 6.8339 14 1 8.6309 -0.0548 7.6477 15 6 10.4196 0.9895 7.0977 16 7 10.5512 1.6264 8.2420 17 14 11.7887 1.0563 5.8287 18 1 11.6093 2.2541 4.9695 19 1 13.1008 1.1351 6.5198 20 1 11.7447 -0.1670 4.9880 21 6 9.3583 0.8268 4.4334 22 6 8.1298 1.2268 3.6102 23 8 3.3607 -0.5014 0.9689 24 1 3.0475 0.9887 -1.8935 25 1 5.5885 0.5790 -1.1080 26 1 5.5791 -1.6305 2.0347 27 1 6.6695 -0.9815 0.7864 28 1 6.4032 1.1928 1.8391 29 1 8.0492 -0.6662 2.5847 30 1 6.2596 -0.1640 5.0060 31 1 6.3544 -1.6893 4.0924 32 1 8.7228 -1.9376 4.6717 33 1 7.7877 -1.6887 6.1671 34 1 11.3590 2.1308 8.4262 35 1 10.0605 0.2831 3.8013 36 1 9.8398 1.7210 4.8293 37 1 8.4478 1.7860 2.7304 38 1 7.4710 1.8472 4.2178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610270929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:36 Heat of formation + Delta-G solvation = 78.264534 kcal Electronic energy + Delta-G solvation = -20386.192982 eV Core-core repulsion = 17231.572675 eV Total energy + Delta-G solvation = -3154.620307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.09469 -38.47843 -37.01600 -35.69224 -33.60713 -32.60006 -31.21446 -30.41560 -29.41257 -26.27527 -24.22411 -22.98407 -22.51050 -21.60621 -21.42489 -19.69533 -19.40646 -17.01017 -16.78048 -16.32829 -15.48624 -14.95490 -14.64218 -14.58264 -14.15450 -14.07911 -13.80213 -13.68038 -13.65626 -13.38066 -13.07661 -12.83136 -12.73191 -12.36800 -12.08200 -11.79453 -11.63403 -11.03964 -10.81008 -10.46570 -10.44089 -10.22222 -9.99872 -9.77045 -9.45583 -8.96823 -8.64126 -8.50369 -6.99780 -5.95699 -3.31420 0.60824 1.61173 1.91897 2.60521 2.92320 3.28877 3.46052 3.48440 3.63484 4.11035 4.42754 4.44347 4.51172 4.91554 4.94139 5.07736 5.17084 5.18574 5.35314 5.37063 5.40267 5.46194 5.61682 5.84719 5.92525 6.04360 6.10113 6.15437 6.29640 6.34871 6.55586 6.57910 6.62883 6.72450 6.87980 6.91479 7.07657 7.28178 7.95566 8.32582 8.93352 9.71113 10.08594 11.20424 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039940 B = 0.003231 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.880846 B = 8664.665427 C = 8940.470832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C 0.294 3.706 3 C 0.028 3.972 4 C -0.115 4.115 5 C -0.215 4.215 6 C 0.051 3.949 7 C 0.128 3.872 8 N -0.683 5.683 9 C 0.097 3.903 10 C -0.121 4.121 11 C 0.148 3.852 12 N -0.605 5.605 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.883 3.117 18 H -0.289 1.289 19 H -0.303 1.303 20 H -0.271 1.271 21 C 0.128 3.872 22 C -0.135 4.135 23 O -0.144 6.144 24 H 0.162 0.838 25 H 0.161 0.839 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.343 0.657 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -3.582 -19.814 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.022 4.022 3 C -0.025 4.025 4 C -0.138 4.138 5 C -0.235 4.235 6 C -0.003 4.003 7 C 0.000 4.000 8 N -0.316 5.316 9 C -0.011 4.011 10 C -0.161 4.161 11 C 0.021 3.979 12 N -0.329 5.329 13 C -0.387 4.387 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.714 3.286 18 H -0.217 1.217 19 H -0.232 1.232 20 H -0.196 1.196 21 C 0.002 3.998 22 C -0.174 4.174 23 O -0.038 6.038 24 H 0.180 0.820 25 H 0.178 0.822 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.304 -3.828 -18.893 22.347 hybrid contribution 1.988 0.299 -1.442 2.474 sum -9.317 -3.529 -20.335 22.645 Atomic orbital electron populations 1.81341 1.10601 1.08340 1.05994 1.23584 0.89687 0.94116 0.94788 1.16454 0.84403 1.09522 0.92085 1.21890 0.92028 1.00520 0.99383 1.21610 0.98269 1.06231 0.97346 1.22822 0.82507 0.99618 0.95326 1.20553 0.89373 0.96345 0.93754 1.60584 1.40456 1.05005 1.25546 1.21503 0.88692 0.97073 0.93867 1.22045 0.99139 0.98958 0.95975 1.20950 0.90655 0.88746 0.97531 1.44356 1.61606 1.23581 1.03340 1.18940 1.04447 1.32740 0.82605 0.89657 1.25293 0.97649 0.98750 0.95984 1.69840 1.28060 1.32679 1.24547 0.86947 0.82564 0.77932 0.81205 1.21672 1.23175 1.19631 1.21305 0.93729 0.95101 0.89654 1.22235 0.99232 0.96336 0.99635 1.84112 1.16361 1.62450 1.40838 0.82001 0.82178 0.88544 0.91197 0.83796 0.93988 0.91092 0.92949 0.96220 0.91654 0.92770 0.95880 0.90723 0.92961 0.90641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -4.64 18.54 41.84 0.78 -3.86 16 2 C 0.29 3.03 15.88 -22.47 -0.36 2.67 16 3 C 0.03 0.26 7.08 -38.27 -0.27 -0.01 16 4 C -0.12 -0.81 10.84 -39.35 -0.43 -1.24 16 5 C -0.21 -1.51 10.77 -39.87 -0.43 -1.94 16 6 C 0.05 0.46 6.83 -35.45 -0.24 0.21 16 7 C 0.13 1.14 6.01 -4.98 -0.03 1.11 16 8 N -0.68 -7.70 6.30 -107.94 -0.68 -8.38 16 9 C 0.10 1.34 2.46 -67.67 -0.17 1.17 16 10 C -0.12 -1.89 5.59 -26.61 -0.15 -2.04 16 11 C 0.15 2.78 6.52 -3.71 -0.02 2.75 16 12 N -0.61 -13.93 2.77 -172.32 -0.48 -14.41 16 13 C -0.26 -7.13 10.03 -15.06 -0.15 -7.29 16 14 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16 15 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 16 N -0.91 -27.64 13.97 55.49 0.78 -26.87 16 17 Si 0.88 21.91 24.35 -169.99 -4.14 17.77 16 18 H -0.29 -6.87 6.62 56.52 0.37 -6.49 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 20 H -0.27 -6.57 6.63 56.52 0.37 -6.20 16 21 C 0.13 2.66 4.20 -3.71 -0.02 2.64 16 22 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 23 O -0.14 -1.54 10.67 4.77 0.05 -1.48 16 24 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 25 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 26 H 0.10 0.88 7.41 -51.93 -0.38 0.50 16 27 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 28 H 0.34 3.46 8.32 -39.29 -0.33 3.13 16 29 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.70 7.42 -51.93 -0.39 0.31 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.02 0.47 7.07 -51.93 -0.37 0.10 16 36 H 0.07 1.72 4.50 -51.93 -0.23 1.48 16 37 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -31.20 317.26 -6.49 -37.68 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.08 Total: -1.51 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.50 Total: -3.73 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.39 Total: -53.51 kcal Atomic # 8 Polarization: -1.54 SS G_CDS: 0.05 Total: -1.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.14 Total: 17.77 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.20 -6.49 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.949 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds