Wall clock time and date at job start Mon Mar 30 2020 02:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36549 * 125.98583 * 117.45683 * 3 2 1 5 5 C 1.40478 * 106.70352 * 179.97438 * 4 3 2 6 6 C 1.35044 * 107.11465 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.61979 * 180.02562 * 6 5 4 8 8 N 1.46904 * 109.46953 * 90.00310 * 7 6 5 9 9 C 1.46898 * 111.00140 * 179.97438 * 8 7 6 10 10 C 1.53043 * 109.46157 * 275.06646 * 9 8 7 11 11 C 1.53195 * 109.31039 * 178.61313 * 10 9 8 12 12 N 1.46921 * 108.77690 * 54.63773 * 11 10 9 13 13 C 1.36932 * 120.62837 * 126.40882 * 12 11 10 14 14 H 1.08004 * 120.00463 * 332.60720 * 13 12 11 15 15 C 1.38820 * 119.99942 * 152.60955 * 13 12 11 16 16 N 1.31618 * 119.99974 * 159.34568 * 15 13 12 17 17 Si 1.86801 * 119.99650 * 339.34669 * 15 13 12 18 18 H 1.48499 * 109.47244 * 92.94416 * 17 15 13 19 19 H 1.48504 * 109.46764 * 212.93853 * 17 15 13 20 20 H 1.48498 * 109.47287 * 332.93842 * 17 15 13 21 21 C 1.46923 * 118.73738 * 306.39117 * 12 11 10 22 22 C 1.53043 * 109.45866 * 155.00031 * 9 8 7 23 23 O 1.34058 * 108.76423 * 0.02562 * 6 5 4 24 24 H 1.08001 * 126.64838 * 0.23547 * 4 3 2 25 25 H 1.08004 * 126.44399 * 180.02562 * 5 4 3 26 26 H 1.09003 * 109.47384 * 210.00169 * 7 6 5 27 27 H 1.09004 * 109.47560 * 330.00690 * 7 6 5 28 28 H 1.00900 * 111.00120 * 303.95563 * 8 7 6 29 29 H 1.08997 * 109.46127 * 35.02787 * 9 8 7 30 30 H 1.08992 * 109.49727 * 298.57045 * 10 9 8 31 31 H 1.09003 * 109.49280 * 58.66258 * 10 9 8 32 32 H 1.08999 * 109.58691 * 294.84851 * 11 10 9 33 33 H 1.09006 * 109.69981 * 174.49382 * 11 10 9 34 34 H 0.97000 * 119.99831 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.58508 * 293.81650 * 21 12 11 36 36 H 1.09007 * 109.70000 * 173.46588 * 21 12 11 37 37 H 1.08994 * 109.49877 * 301.33422 * 22 9 8 38 38 H 1.08999 * 109.49947 * 61.43811 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3701 0.5104 -0.9804 5 6 4.6962 0.2977 -0.5685 6 6 4.6454 -0.3237 0.6294 7 6 5.8365 -0.7477 1.4494 8 7 6.2220 0.3440 2.3536 9 6 7.3822 -0.0344 3.1712 10 6 6.9069 -0.8035 4.4060 11 6 8.1216 -1.2265 5.2381 12 7 8.9249 -0.0344 5.5420 13 6 9.2634 0.2679 6.8339 14 1 8.6309 -0.0548 7.6477 15 6 10.4196 0.9895 7.0977 16 7 10.5512 1.6264 8.2420 17 14 11.7887 1.0563 5.8287 18 1 11.6093 2.2541 4.9695 19 1 13.1008 1.1351 6.5198 20 1 11.7447 -0.1670 4.9880 21 6 9.3583 0.8268 4.4334 22 6 8.1298 1.2268 3.6102 23 8 3.3607 -0.5014 0.9689 24 1 3.0475 0.9887 -1.8935 25 1 5.5885 0.5790 -1.1080 26 1 5.5791 -1.6305 2.0347 27 1 6.6695 -0.9815 0.7864 28 1 6.4032 1.1928 1.8391 29 1 8.0492 -0.6662 2.5847 30 1 6.2596 -0.1640 5.0060 31 1 6.3544 -1.6893 4.0924 32 1 8.7228 -1.9376 4.6717 33 1 7.7877 -1.6887 6.1671 34 1 11.3590 2.1308 8.4262 35 1 10.0605 0.2831 3.8013 36 1 9.8398 1.7210 4.8293 37 1 8.4478 1.7860 2.7304 38 1 7.4710 1.8472 4.2178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610270929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:35 Heat of formation + Delta-G solvation = 56.527702 kcal Electronic energy + Delta-G solvation = -20387.135562 eV Core-core repulsion = 17231.572675 eV Total energy + Delta-G solvation = -3155.562887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.71871 -39.78462 -37.84864 -36.93558 -34.46857 -34.03636 -32.57894 -31.87034 -30.52564 -27.36809 -25.78673 -24.26147 -23.22188 -23.07935 -22.15729 -20.81524 -20.32886 -18.80494 -17.54441 -17.28795 -17.11911 -16.00821 -15.82820 -15.58299 -15.41025 -15.22095 -14.99962 -14.61903 -14.53835 -14.36869 -14.24594 -13.90910 -13.89414 -13.57535 -13.51066 -13.27563 -12.73511 -12.48945 -12.34929 -12.15601 -11.87877 -11.57322 -11.36218 -11.17288 -10.99739 -10.67560 -9.63509 -9.31880 -8.90272 -8.13914 -5.45551 -0.05542 0.90104 1.32133 1.35509 1.44257 1.53866 1.90969 2.19498 2.44573 2.94628 3.08517 3.26789 3.44283 3.80085 3.91707 3.93120 4.09431 4.36296 4.38940 4.47256 4.51836 4.58278 4.63090 4.74400 4.84415 4.86991 4.92646 4.94443 5.02779 5.09537 5.23512 5.34638 5.43837 5.58935 5.90004 5.96069 6.05981 6.15466 6.15580 6.50052 6.95913 7.66476 8.05696 9.06416 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039940 B = 0.003231 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.880846 B = 8664.665427 C = 8940.470832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.312 3.688 3 C 0.002 3.998 4 C -0.095 4.095 5 C -0.201 4.201 6 C 0.038 3.962 7 C 0.130 3.870 8 N -0.692 5.692 9 C 0.109 3.891 10 C -0.113 4.113 11 C 0.142 3.858 12 N -0.622 5.622 13 C -0.249 4.249 14 H 0.045 0.955 15 C -0.041 4.041 16 N -0.962 5.962 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.314 1.314 20 H -0.256 1.256 21 C 0.120 3.880 22 C -0.126 4.126 23 O -0.171 6.171 24 H 0.191 0.809 25 H 0.190 0.810 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.354 0.646 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.261 0.739 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.376 -3.906 -23.974 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.003 4.003 3 C -0.051 4.051 4 C -0.117 4.117 5 C -0.221 4.221 6 C -0.015 4.015 7 C 0.002 3.998 8 N -0.326 5.326 9 C 0.000 4.000 10 C -0.152 4.152 11 C 0.017 3.983 12 N -0.346 5.346 13 C -0.379 4.379 14 H 0.063 0.937 15 C -0.235 4.235 16 N -0.608 5.608 17 Si 0.782 3.218 18 H -0.197 1.197 19 H -0.244 1.244 20 H -0.180 1.180 21 C -0.005 4.005 22 C -0.165 4.165 23 O -0.066 6.066 24 H 0.208 0.792 25 H 0.208 0.792 26 H 0.109 0.891 27 H 0.118 0.882 28 H 0.174 0.826 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.600 -4.168 -23.117 25.771 hybrid contribution 1.680 0.361 -0.134 1.724 sum -8.920 -3.807 -23.251 25.193 Atomic orbital electron populations 1.81348 1.11743 1.10052 1.07375 1.23776 0.89966 0.92918 0.93622 1.16583 0.83858 1.11500 0.93122 1.22317 0.91685 0.98429 0.99282 1.21983 0.99123 1.04521 0.96438 1.23014 0.81926 1.00406 0.96194 1.20623 0.90214 0.95104 0.93871 1.60382 1.39147 1.06326 1.26723 1.21241 0.89555 0.95665 0.93545 1.21894 0.97203 0.99924 0.96186 1.21123 0.91611 0.87704 0.97831 1.44500 1.62220 1.25662 1.02267 1.18867 1.03571 1.31333 0.84156 0.93673 1.25987 1.00137 0.99062 0.98337 1.69991 1.28711 1.34727 1.27361 0.85809 0.78180 0.79060 0.78777 1.19747 1.24355 1.18031 1.21400 0.95980 0.93752 0.89355 1.22075 0.97012 0.97590 0.99858 1.84078 1.17306 1.63363 1.41812 0.79200 0.79233 0.89061 0.88240 0.82631 0.91956 0.93792 0.90244 0.94179 0.93252 0.93024 0.94261 0.93423 0.89382 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -10.28 18.54 19.00 0.35 -9.93 16 2 C 0.31 6.23 15.88 88.33 1.40 7.63 16 3 C 0.00 0.03 7.08 23.12 0.16 0.19 16 4 C -0.09 -0.98 10.84 22.42 0.24 -0.73 16 5 C -0.20 -1.89 10.77 22.08 0.24 -1.66 16 6 C 0.04 0.54 6.83 24.95 0.17 0.71 16 7 C 0.13 1.75 6.01 85.55 0.51 2.26 16 8 N -0.69 -12.94 6.30 -495.43 -3.12 -16.06 16 9 C 0.11 2.60 2.46 44.94 0.11 2.71 16 10 C -0.11 -3.28 5.59 30.67 0.17 -3.11 16 11 C 0.14 5.20 6.52 86.36 0.56 5.76 16 12 N -0.62 -28.35 2.77 -699.09 -1.94 -30.29 16 13 C -0.25 -14.18 10.03 84.04 0.84 -13.34 16 14 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 15 C -0.04 -2.39 5.23 84.86 0.44 -1.95 16 16 N -0.96 -60.86 13.97 21.65 0.30 -60.56 16 17 Si 0.95 45.53 24.35 68.60 1.67 47.20 16 18 H -0.27 -12.03 6.62 99.48 0.66 -11.37 16 19 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 20 H -0.26 -11.45 6.63 99.48 0.66 -10.79 16 21 C 0.12 4.71 4.20 86.36 0.36 5.07 16 22 C -0.13 -3.69 5.36 30.67 0.16 -3.53 16 23 O -0.17 -3.32 10.67 -5.85 -0.06 -3.38 16 24 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 25 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 26 H 0.09 1.34 7.41 -2.39 -0.02 1.32 16 27 H 0.10 0.81 8.06 -2.39 -0.02 0.79 16 28 H 0.35 5.53 8.32 -89.69 -0.75 4.79 16 29 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.89 7.42 -2.39 -0.02 1.88 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 34 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.04 1.43 7.07 -2.39 -0.02 1.41 16 36 H 0.05 2.12 4.50 -2.38 -0.01 2.11 16 37 H 0.09 1.97 8.10 -2.39 -0.02 1.95 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.66 317.26 2.84 -68.82 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.24 Total: 4.17 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.39 Total: 0.02 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -4.40 Total: -116.83 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.06 Total: -3.38 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -71.66 2.84 -68.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610270929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.352 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds