Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48504 * 109.46918 * 240.00670 * 3 2 1 5 5 H 1.48502 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47319 * 120.00063 * 3 2 1 7 7 C 1.38949 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00319 * 198.90686 * 7 2 1 9 9 N 1.37101 * 119.99931 * 18.91865 * 7 2 1 10 10 C 1.34775 * 120.00185 * 42.98655 * 9 7 2 11 11 O 1.21291 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99688 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46543 * 60.02302 * 12 10 9 14 14 C 1.53155 * 109.46424 * 180.02562 * 12 10 9 15 15 C 1.53393 * 109.27809 * 189.45933 * 14 12 10 16 16 C 1.51070 * 108.19377 * 311.22671 * 15 14 12 17 17 N 1.30091 * 127.37147 * 196.00485 * 16 15 14 18 18 C 1.34284 * 109.21051 * 179.85889 * 17 16 15 19 19 C 1.34859 * 108.07255 * 0.02562 * 18 17 16 20 20 N 1.35412 * 123.99779 * 15.89881 * 16 15 14 21 21 C 1.46480 * 124.82684 * 0.16249 * 20 16 15 22 22 C 1.46497 * 119.99575 * 222.99389 * 9 7 2 23 23 C 1.53002 * 117.50018 * 5.35495 * 22 9 7 24 24 C 1.52996 * 59.99968 * 252.51068 * 23 22 9 25 25 H 0.97003 * 119.99780 * 354.92566 * 1 2 3 26 26 H 1.08994 * 109.51329 * 309.42066 * 14 12 10 27 27 H 1.09004 * 109.50305 * 69.51307 * 14 12 10 28 28 H 1.09000 * 109.71709 * 70.85748 * 15 14 12 29 29 H 1.08998 * 109.71877 * 191.50162 * 15 14 12 30 30 H 1.08005 * 125.96874 * 180.02562 * 18 17 16 31 31 H 1.08004 * 126.65491 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.58353 * 257.30663 * 21 20 16 33 33 H 1.09000 * 109.58237 * 136.89548 * 21 20 16 34 34 H 1.09000 * 115.55233 * 151.06350 * 22 9 7 35 35 H 1.08994 * 117.49857 * 0.02562 * 23 22 9 36 36 H 1.09010 * 117.49561 * 145.01998 * 23 22 9 37 37 H 1.09004 * 117.50021 * 252.51088 * 24 23 22 38 38 H 1.08992 * 117.52008 * 107.48474 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0452 -1.2284 0.3036 9 7 1.3789 -2.3588 -0.3839 10 6 0.5733 -2.3597 -1.4644 11 8 0.4059 -1.3384 -2.0969 12 6 -0.1195 -3.6296 -1.8865 13 1 -0.7626 -3.9784 -1.0785 14 6 -0.9671 -3.3585 -3.1330 15 6 -1.8500 -4.5794 -3.4204 16 6 -0.9787 -5.8127 -3.3755 17 7 -1.2608 -6.9960 -3.8365 18 6 -0.2251 -7.8188 -3.6052 19 6 0.7363 -7.1141 -2.9746 20 7 0.2597 -5.8454 -2.8288 21 6 0.9285 -4.7019 -2.2036 22 6 1.5815 -3.5923 0.3799 23 6 2.4050 -3.4998 1.6660 24 6 2.9971 -4.1709 0.4251 25 1 -0.4850 0.8368 0.0743 26 1 -1.5971 -2.4857 -2.9621 27 1 -0.3127 -3.1738 -3.9849 28 1 -2.6315 -4.6543 -2.6643 29 1 -2.3012 -4.4827 -4.4079 30 1 -0.1713 -8.8628 -3.8768 31 1 1.6973 -7.4834 -2.6480 32 1 1.6723 -4.2946 -2.8884 33 1 1.4143 -5.0220 -1.2818 34 1 0.7501 -4.2971 0.3639 35 1 2.7958 -2.5210 1.9441 36 1 2.1153 -4.1437 2.4966 37 1 3.0971 -5.2562 0.4392 38 1 3.7777 -3.6340 -0.1137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615728136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 67.042662 kcal Electronic energy + Delta-G solvation = -22047.749997 eV Core-core repulsion = 18892.643072 eV Total energy + Delta-G solvation = -3155.106924 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.09909 -39.13214 -36.58888 -35.51403 -33.04206 -32.83256 -31.16813 -29.60954 -28.24346 -25.24625 -24.24077 -22.40922 -21.84792 -21.27348 -21.12230 -19.57947 -18.51007 -16.91163 -16.64763 -16.26451 -15.37354 -14.82451 -14.76567 -14.21827 -14.01904 -13.89300 -13.60810 -13.52954 -13.26450 -12.85992 -12.56696 -11.96394 -11.59395 -11.49759 -11.05720 -11.04818 -10.94422 -10.84577 -10.75434 -10.56006 -10.28482 -10.11306 -9.91743 -9.74237 -9.32671 -8.83402 -8.19851 -8.14360 -7.18655 -6.22850 -3.98774 2.26347 2.98899 3.23448 3.31276 3.32260 3.33919 3.86213 4.12348 4.51275 4.53899 4.62170 4.86293 4.94810 4.99518 5.19425 5.28525 5.36878 5.44293 5.47963 5.57777 5.60460 5.64851 5.72276 5.81855 5.87296 6.03263 6.04170 6.07600 6.30431 6.41203 6.53913 6.57425 6.59082 6.79251 6.95225 7.36968 7.50299 8.13076 8.30713 8.91049 8.99432 9.51208 10.10964 10.86062 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.006037 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.338782 B = 4637.198196 C = 5437.334184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.353 4.353 8 H 0.079 0.921 9 N -0.423 5.423 10 C 0.488 3.512 11 O -0.521 6.521 12 C -0.114 4.114 13 H 0.089 0.911 14 C -0.101 4.101 15 C -0.035 4.035 16 C 0.210 3.790 17 N -0.498 5.498 18 C -0.039 4.039 19 C -0.058 4.058 20 N -0.449 5.449 21 C 0.106 3.894 22 C 0.067 3.933 23 C -0.170 4.170 24 C -0.210 4.210 25 H 0.266 0.734 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -10.457 -1.240 10.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.137 4.137 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.479 4.479 8 H 0.097 0.903 9 N -0.143 5.143 10 C 0.274 3.726 11 O -0.398 6.398 12 C -0.137 4.137 13 H 0.107 0.893 14 C -0.140 4.140 15 C -0.074 4.074 16 C -0.052 4.052 17 N -0.217 5.217 18 C -0.187 4.187 19 C -0.192 4.192 20 N -0.130 5.130 21 C -0.016 4.016 22 C -0.039 4.039 23 C -0.208 4.208 24 C -0.250 4.250 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.697 -9.864 -1.956 10.080 hybrid contribution 1.297 0.739 0.700 1.648 sum 1.993 -9.126 -1.257 9.425 Atomic orbital electron populations 1.69810 1.06600 1.27772 1.42122 1.25225 0.94829 0.99439 0.94166 0.86244 0.79306 0.81789 0.78520 1.19909 1.21106 1.20340 1.18827 0.94889 0.83815 1.50416 0.90307 1.42791 1.43457 1.06328 1.21749 1.19279 0.83485 0.88083 0.81748 1.90551 1.61944 1.33314 1.53974 1.21576 0.97058 0.95418 0.99619 0.89294 1.21453 0.98377 0.97364 0.96761 1.20292 0.95822 0.87442 1.03826 1.23418 0.86169 0.96147 0.99495 1.70038 1.28247 1.00379 1.23045 1.22285 0.91185 0.99916 1.05356 1.22544 1.02305 0.84845 1.09533 1.45541 1.14725 1.09558 1.43225 1.22313 0.95550 0.84323 0.99367 1.21780 0.92582 0.91560 0.97953 1.23093 1.04064 1.02717 0.90940 1.23388 0.99039 0.98868 1.03656 0.92359 0.88864 0.91150 0.89446 0.88854 0.81696 0.81142 0.89568 0.87814 0.88030 0.87259 0.89682 0.89755 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.50 11.67 55.50 0.65 -22.85 16 2 C 0.07 2.00 4.36 -17.47 -0.08 1.93 16 3 Si 0.91 21.08 29.60 -169.99 -5.03 16.05 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.35 -9.05 7.91 -14.93 -0.12 -9.17 16 8 H 0.08 1.95 7.29 -52.49 -0.38 1.57 16 9 N -0.42 -9.73 2.85 -107.73 -0.31 -10.03 16 10 C 0.49 11.34 6.35 -10.99 -0.07 11.27 16 11 O -0.52 -14.28 13.49 5.55 0.07 -14.21 16 12 C -0.11 -2.04 1.76 -91.56 -0.16 -2.20 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 14 C -0.10 -1.69 4.68 -26.45 -0.12 -1.81 16 15 C -0.03 -0.50 6.34 -27.50 -0.17 -0.68 16 16 C 0.21 3.41 7.65 -155.24 -1.19 2.22 16 17 N -0.50 -8.39 11.24 -10.61 -0.12 -8.51 16 18 C -0.04 -0.56 11.87 -17.68 -0.21 -0.77 16 19 C -0.06 -0.78 11.64 -16.76 -0.20 -0.98 16 20 N -0.45 -6.83 3.13 -113.74 -0.36 -7.19 16 21 C 0.11 1.64 5.79 -3.92 -0.02 1.62 16 22 C 0.07 1.22 4.31 -67.93 -0.29 0.93 16 23 C -0.17 -2.83 9.80 -26.73 -0.26 -3.09 16 24 C -0.21 -3.20 9.47 -26.73 -0.25 -3.46 16 25 H 0.27 7.27 8.32 -40.82 -0.34 6.93 16 26 H 0.09 1.68 7.79 -51.93 -0.40 1.27 16 27 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.17 1.85 8.06 -52.48 -0.42 1.42 16 31 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 33 H 0.10 1.48 4.67 -51.93 -0.24 1.24 16 34 H 0.10 1.69 6.26 -51.93 -0.33 1.36 16 35 H 0.11 2.04 6.75 -51.93 -0.35 1.69 16 36 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 306.92 15.07 4.63 4.63 Total: -1.00 -31.82 306.92 -8.65 -40.47 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.04 Total: 5.84 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.15 Total: -4.19 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.14 Total: -48.59 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.82 -8.65 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615728136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.510 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds