Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48504 * 109.46918 * 240.00670 * 3 2 1 5 5 H 1.48502 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47319 * 120.00063 * 3 2 1 7 7 C 1.38949 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00319 * 198.90686 * 7 2 1 9 9 N 1.37101 * 119.99931 * 18.91865 * 7 2 1 10 10 C 1.34775 * 120.00185 * 42.98655 * 9 7 2 11 11 O 1.21291 * 119.99951 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99688 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46543 * 60.02302 * 12 10 9 14 14 C 1.53155 * 109.46424 * 180.02562 * 12 10 9 15 15 C 1.53393 * 109.27809 * 189.45933 * 14 12 10 16 16 C 1.51070 * 108.19377 * 311.22671 * 15 14 12 17 17 N 1.30091 * 127.37147 * 196.00485 * 16 15 14 18 18 C 1.34284 * 109.21051 * 179.85889 * 17 16 15 19 19 C 1.34859 * 108.07255 * 0.02562 * 18 17 16 20 20 N 1.35412 * 123.99779 * 15.89881 * 16 15 14 21 21 C 1.46480 * 124.82684 * 0.16249 * 20 16 15 22 22 C 1.46497 * 119.99575 * 222.99389 * 9 7 2 23 23 C 1.53002 * 117.50018 * 5.35495 * 22 9 7 24 24 C 1.52996 * 59.99968 * 252.51068 * 23 22 9 25 25 H 0.97003 * 119.99780 * 354.92566 * 1 2 3 26 26 H 1.08994 * 109.51329 * 309.42066 * 14 12 10 27 27 H 1.09004 * 109.50305 * 69.51307 * 14 12 10 28 28 H 1.09000 * 109.71709 * 70.85748 * 15 14 12 29 29 H 1.08998 * 109.71877 * 191.50162 * 15 14 12 30 30 H 1.08005 * 125.96874 * 180.02562 * 18 17 16 31 31 H 1.08004 * 126.65491 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.58353 * 257.30663 * 21 20 16 33 33 H 1.09000 * 109.58237 * 136.89548 * 21 20 16 34 34 H 1.09000 * 115.55233 * 151.06350 * 22 9 7 35 35 H 1.08994 * 117.49857 * 0.02562 * 23 22 9 36 36 H 1.09010 * 117.49561 * 145.01998 * 23 22 9 37 37 H 1.09004 * 117.50021 * 252.51088 * 24 23 22 38 38 H 1.08992 * 117.52008 * 107.48474 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0452 -1.2284 0.3036 9 7 1.3789 -2.3588 -0.3839 10 6 0.5733 -2.3597 -1.4644 11 8 0.4059 -1.3384 -2.0969 12 6 -0.1195 -3.6296 -1.8865 13 1 -0.7626 -3.9784 -1.0785 14 6 -0.9671 -3.3585 -3.1330 15 6 -1.8500 -4.5794 -3.4204 16 6 -0.9787 -5.8127 -3.3755 17 7 -1.2608 -6.9960 -3.8365 18 6 -0.2251 -7.8188 -3.6052 19 6 0.7363 -7.1141 -2.9746 20 7 0.2597 -5.8454 -2.8288 21 6 0.9285 -4.7019 -2.2036 22 6 1.5815 -3.5923 0.3799 23 6 2.4050 -3.4998 1.6660 24 6 2.9971 -4.1709 0.4251 25 1 -0.4850 0.8368 0.0743 26 1 -1.5971 -2.4857 -2.9621 27 1 -0.3127 -3.1738 -3.9849 28 1 -2.6315 -4.6543 -2.6643 29 1 -2.3012 -4.4827 -4.4079 30 1 -0.1713 -8.8628 -3.8768 31 1 1.6973 -7.4834 -2.6480 32 1 1.6723 -4.2946 -2.8884 33 1 1.4143 -5.0220 -1.2818 34 1 0.7501 -4.2971 0.3639 35 1 2.7958 -2.5210 1.9441 36 1 2.1153 -4.1437 2.4966 37 1 3.0971 -5.2562 0.4392 38 1 3.7777 -3.6340 -0.1137 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615728136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 48.321129 kcal Electronic energy + Delta-G solvation = -22048.561823 eV Core-core repulsion = 18892.643072 eV Total energy + Delta-G solvation = -3155.918751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.25276 -40.76010 -38.05946 -37.00468 -34.74891 -34.16623 -32.92955 -30.98512 -29.42095 -27.06023 -25.52763 -23.84591 -23.11481 -22.75791 -22.25030 -21.14747 -19.87187 -18.48671 -17.95675 -17.84894 -16.81299 -16.50178 -16.22316 -15.74732 -15.42043 -15.10892 -15.06521 -14.75029 -14.49598 -14.45793 -13.89988 -13.59707 -13.09827 -12.95819 -12.80362 -12.62304 -12.53973 -12.24273 -12.17813 -12.11594 -11.97327 -11.62209 -11.26239 -10.93036 -10.74020 -10.52578 -10.01304 -9.23249 -9.01259 -8.22211 -5.99402 1.15728 1.36900 1.45295 1.48263 1.80383 2.17413 2.20813 2.35540 2.94576 3.09236 3.25643 3.38882 3.58763 3.65982 3.71478 4.02599 4.03371 4.17502 4.25389 4.28300 4.33500 4.42474 4.47208 4.60759 4.67691 4.77267 4.87484 4.92614 4.99709 5.08709 5.18751 5.26124 5.44004 5.45827 5.49282 5.91429 6.17148 6.21825 7.00387 7.15017 7.18210 7.65505 8.29542 8.86196 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025189 B = 0.006037 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.338782 B = 4637.198196 C = 5437.334184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.024 3.976 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.257 1.257 7 C -0.357 4.357 8 H 0.082 0.918 9 N -0.437 5.437 10 C 0.477 3.523 11 O -0.576 6.576 12 C -0.102 4.102 13 H 0.094 0.906 14 C -0.093 4.093 15 C -0.025 4.025 16 C 0.188 3.812 17 N -0.523 5.523 18 C -0.054 4.054 19 C -0.049 4.049 20 N -0.453 5.453 21 C 0.121 3.879 22 C 0.039 3.961 23 C -0.172 4.172 24 C -0.178 4.178 25 H 0.260 0.740 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.192 0.808 31 H 0.209 0.791 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -13.095 -0.636 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.183 4.183 3 Si 0.793 3.207 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.484 4.484 8 H 0.100 0.900 9 N -0.157 5.157 10 C 0.264 3.736 11 O -0.456 6.456 12 C -0.124 4.124 13 H 0.112 0.888 14 C -0.132 4.132 15 C -0.064 4.064 16 C -0.074 4.074 17 N -0.242 5.242 18 C -0.202 4.202 19 C -0.182 4.182 20 N -0.135 5.135 21 C -0.001 4.001 22 C -0.066 4.066 23 C -0.210 4.210 24 C -0.216 4.216 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.209 0.791 31 H 0.225 0.775 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.062 -12.546 -1.319 12.783 hybrid contribution 0.945 1.454 0.508 1.807 sum 3.007 -11.092 -0.811 11.521 Atomic orbital electron populations 1.69919 1.07961 1.27768 1.44728 1.25992 0.95442 1.02481 0.94347 0.85411 0.78158 0.78399 0.78752 1.20745 1.21567 1.18163 1.19081 0.95192 0.85113 1.49036 0.90048 1.42983 1.43081 1.07337 1.22260 1.20113 0.83055 0.89151 0.81237 1.90510 1.63762 1.35700 1.55650 1.21380 0.97381 0.93662 0.99986 0.88780 1.21326 0.98112 0.97809 0.95940 1.20218 0.95370 0.85880 1.04907 1.23575 0.86921 0.96429 1.00493 1.70017 1.29648 1.00985 1.23597 1.22833 0.90745 1.01066 1.05507 1.23175 1.03335 0.83588 1.08091 1.45562 1.14586 1.10055 1.43309 1.22088 0.94247 0.83772 0.99971 1.22033 0.95073 0.90311 0.99148 1.23150 1.03566 1.02413 0.91859 1.23412 0.95904 1.00975 1.01321 0.93094 0.90940 0.92199 0.88447 0.87592 0.79084 0.77452 0.90223 0.86027 0.86135 0.89917 0.86651 0.85484 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.98 11.67 21.66 0.25 -50.73 16 2 C 0.02 1.32 4.36 84.93 0.37 1.69 16 3 Si 0.97 44.21 29.60 68.60 2.03 46.24 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.36 -18.51 7.91 84.04 0.66 -17.85 16 8 H 0.08 4.06 7.29 -2.91 -0.02 4.04 16 9 N -0.44 -20.10 2.85 -613.14 -1.75 -21.84 16 10 C 0.48 22.53 6.35 87.66 0.56 23.09 16 11 O -0.58 -32.86 13.49 -3.06 -0.04 -32.91 16 12 C -0.10 -3.60 1.76 -11.40 -0.02 -3.62 16 13 H 0.09 3.22 7.54 -2.39 -0.02 3.21 16 14 C -0.09 -3.16 4.68 30.78 0.14 -3.02 16 15 C -0.03 -0.70 6.34 30.10 0.19 -0.51 16 16 C 0.19 5.76 7.65 138.25 1.06 6.82 16 17 N -0.52 -16.53 11.24 -187.49 -2.11 -18.64 16 18 C -0.05 -1.38 11.87 83.54 0.99 -0.39 16 19 C -0.05 -1.12 11.64 83.22 0.97 -0.15 16 20 N -0.45 -12.57 3.13 -513.78 -1.61 -14.18 16 21 C 0.12 3.48 5.79 86.47 0.50 3.98 16 22 C 0.04 1.34 4.31 44.99 0.19 1.53 16 23 C -0.17 -5.29 9.80 30.59 0.30 -4.99 16 24 C -0.18 -4.75 9.47 30.59 0.29 -4.46 16 25 H 0.26 14.83 8.32 -92.71 -0.77 14.06 16 26 H 0.07 2.74 7.79 -2.39 -0.02 2.72 16 27 H 0.06 2.11 8.12 -2.38 -0.02 2.09 16 28 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.21 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 33 H 0.12 3.03 4.67 -2.39 -0.01 3.02 16 34 H 0.12 3.64 6.26 -2.39 -0.01 3.62 16 35 H 0.08 3.01 6.75 -2.39 -0.02 2.99 16 36 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 37 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -71.51 306.92 4.05 -67.46 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 1.07 Total: 22.47 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.21 Total: 2.12 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.21 Total: -105.39 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.04 Total: -32.91 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.51 4.05 -67.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615728136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.781 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds