Wall clock time and date at job start Mon Mar 30 2020 02:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47315 * 240.00031 * 3 2 1 5 5 H 1.48501 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46938 * 119.99872 * 3 2 1 7 7 C 1.38950 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99987 * 160.57906 * 7 2 1 9 9 N 1.37106 * 119.99785 * 340.56396 * 7 2 1 10 10 C 1.34772 * 120.00288 * 317.29953 * 9 7 2 11 11 O 1.21293 * 119.99778 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99718 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.47001 * 300.00056 * 12 10 9 14 14 C 1.53156 * 109.46473 * 180.02562 * 12 10 9 15 15 C 1.53400 * 109.24160 * 170.50929 * 14 12 10 16 16 C 1.51037 * 108.21350 * 48.80958 * 15 14 12 17 17 N 1.30093 * 127.38942 * 164.02128 * 16 15 14 18 18 C 1.34286 * 109.21056 * 180.10213 * 17 16 15 19 19 C 1.34847 * 108.07508 * 359.97438 * 18 17 16 20 20 N 1.35425 * 123.98391 * 344.08127 * 16 15 14 21 21 C 1.46472 * 124.82174 * 359.83988 * 20 16 15 22 22 C 1.46504 * 119.99216 * 137.29412 * 9 7 2 23 23 C 1.52994 * 117.50161 * 354.18988 * 22 9 7 24 24 C 1.53006 * 117.49823 * 62.85107 * 22 9 7 25 25 H 0.96996 * 120.00079 * 355.09102 * 1 2 3 26 26 H 1.08993 * 109.51280 * 290.43239 * 14 12 10 27 27 H 1.09000 * 109.51002 * 50.58237 * 14 12 10 28 28 H 1.08998 * 109.70135 * 289.13261 * 15 14 12 29 29 H 1.09006 * 109.72224 * 168.50149 * 15 14 12 30 30 H 1.08003 * 125.96210 * 179.97438 * 18 17 16 31 31 H 1.08002 * 126.65760 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.58486 * 223.10068 * 21 20 16 33 33 H 1.08993 * 109.58616 * 102.68292 * 21 20 16 34 34 H 1.08997 * 115.54373 * 208.50720 * 22 9 7 35 35 H 1.09006 * 117.49533 * 214.99956 * 23 22 9 36 36 H 1.09004 * 117.50214 * 0.02562 * 23 22 9 37 37 H 1.09003 * 117.49668 * 359.96994 * 24 22 9 38 38 H 1.08994 * 117.50078 * 144.97024 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0428 -1.2298 -0.3115 9 7 1.3819 -2.3570 0.3941 10 6 0.5802 -2.3517 1.4774 11 8 0.4137 -1.3263 2.1035 12 6 -0.1093 -3.6197 1.9106 13 1 -0.7545 -3.9751 1.1072 14 6 -0.9538 -3.3410 3.1576 15 6 -1.8341 -4.5615 3.4551 16 6 -0.9614 -5.7936 3.4169 17 7 -1.2408 -6.9744 3.8861 18 6 -0.2044 -7.7972 3.6576 19 6 0.7545 -7.0953 3.0204 20 7 0.2759 -5.8281 2.8675 21 6 0.9414 -4.6880 2.2330 22 6 1.5835 -3.5955 -0.3621 23 6 2.3933 -3.5087 -1.6573 24 6 3.0018 -4.1671 -0.4166 25 1 -0.4850 0.8369 0.0719 26 1 -0.2974 -3.1501 4.0065 27 1 -1.5858 -2.4704 2.9821 28 1 -2.6173 -4.6421 2.7014 29 1 -2.2830 -4.4591 4.4431 30 1 -0.1487 -8.8393 3.9357 31 1 1.7155 -7.4651 2.6946 32 1 1.4256 -5.0136 1.3123 33 1 1.6859 -4.2746 2.9132 34 1 0.7561 -4.3044 -0.3323 35 1 2.0985 -4.1604 -2.4798 36 1 2.7765 -2.5301 -1.9467 37 1 3.7849 -3.6214 0.1098 38 1 3.1073 -5.2519 -0.4224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615728137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:41 Heat of formation + Delta-G solvation = 66.397445 kcal Electronic energy + Delta-G solvation = -22048.888898 eV Core-core repulsion = 18893.753996 eV Total energy + Delta-G solvation = -3155.134903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.10457 -39.14688 -36.59742 -35.52823 -33.04772 -32.83581 -31.17583 -29.61449 -28.24945 -25.25138 -24.24833 -22.41719 -21.85497 -21.28224 -21.12808 -19.58590 -18.51899 -16.91529 -16.65686 -16.27106 -15.37632 -14.82636 -14.77207 -14.22601 -14.02190 -13.89762 -13.61398 -13.53720 -13.26973 -12.87903 -12.57303 -11.96318 -11.59577 -11.52888 -11.07122 -11.04807 -10.92001 -10.84829 -10.76377 -10.56514 -10.27985 -10.12497 -9.92444 -9.74927 -9.33297 -8.82958 -8.20585 -8.14880 -7.22088 -6.21466 -4.00806 2.25831 2.98277 3.24823 3.31815 3.32593 3.35148 3.84796 4.13636 4.50539 4.53381 4.61445 4.85311 4.94224 4.98900 5.19076 5.28665 5.36199 5.43619 5.47432 5.57287 5.59592 5.64237 5.71420 5.80969 5.86508 6.02552 6.03756 6.06907 6.29632 6.40389 6.53091 6.56751 6.58301 6.78642 6.94777 7.36432 7.50074 8.12291 8.30221 8.90424 8.98355 9.50397 10.08984 10.85441 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.006041 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.561069 B = 4633.783392 C = 5434.092765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.349 4.349 8 H 0.079 0.921 9 N -0.423 5.423 10 C 0.489 3.511 11 O -0.522 6.522 12 C -0.115 4.115 13 H 0.089 0.911 14 C -0.101 4.101 15 C -0.035 4.035 16 C 0.210 3.790 17 N -0.498 5.498 18 C -0.039 4.039 19 C -0.058 4.058 20 N -0.449 5.449 21 C 0.106 3.894 22 C 0.067 3.933 23 C -0.171 4.171 24 C -0.210 4.210 25 H 0.266 0.734 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -10.552 1.507 10.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.097 0.903 9 N -0.143 5.143 10 C 0.275 3.725 11 O -0.399 6.399 12 C -0.137 4.137 13 H 0.107 0.893 14 C -0.140 4.140 15 C -0.074 4.074 16 C -0.052 4.052 17 N -0.217 5.217 18 C -0.187 4.187 19 C -0.192 4.192 20 N -0.131 5.131 21 C -0.015 4.015 22 C -0.039 4.039 23 C -0.208 4.208 24 C -0.249 4.249 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.692 -9.960 2.088 10.200 hybrid contribution 1.291 0.741 -0.619 1.612 sum 1.984 -9.219 1.469 9.544 Atomic orbital electron populations 1.69862 1.06537 1.28115 1.41715 1.25168 0.94752 0.99372 0.94360 0.86331 0.79421 0.82161 0.78501 1.20299 1.21124 1.19987 1.18843 0.94747 0.84378 1.49603 0.90297 1.42799 1.43662 1.06185 1.21695 1.19293 0.83409 0.88111 0.81682 1.90548 1.61850 1.33032 1.54426 1.21580 0.97067 0.95451 0.99603 0.89265 1.21457 0.98416 0.97353 0.96729 1.20288 0.95815 0.87472 1.03825 1.23413 0.86214 0.96190 0.99405 1.70040 1.28191 1.00421 1.23046 1.22282 0.91213 0.99946 1.05292 1.22540 1.02307 0.84924 1.09437 1.45541 1.14799 1.09702 1.43026 1.22307 0.95584 0.84447 0.99204 1.21794 0.92705 0.91450 0.97972 1.23110 1.04059 1.02760 0.90910 1.23400 0.98839 0.98961 1.03713 0.92345 0.91131 0.88864 0.89437 0.88850 0.81692 0.81139 0.87822 0.89549 0.87998 0.89665 0.87267 0.88776 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.48 11.68 55.50 0.65 -22.84 16 2 C 0.07 2.00 4.34 -17.47 -0.08 1.92 16 3 Si 0.91 21.06 29.60 -169.99 -5.03 16.03 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -8.95 7.90 -14.93 -0.12 -9.07 16 8 H 0.08 1.95 7.30 -52.49 -0.38 1.57 16 9 N -0.42 -9.71 2.85 -107.73 -0.31 -10.02 16 10 C 0.49 11.31 6.36 -10.99 -0.07 11.24 16 11 O -0.52 -14.21 13.48 5.55 0.07 -14.14 16 12 C -0.11 -2.04 1.75 -91.56 -0.16 -2.20 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 14 C -0.10 -1.68 4.68 -26.44 -0.12 -1.80 16 15 C -0.04 -0.50 6.33 -27.51 -0.17 -0.68 16 16 C 0.21 3.40 7.65 -155.24 -1.19 2.21 16 17 N -0.50 -8.36 11.24 -10.62 -0.12 -8.48 16 18 C -0.04 -0.56 11.87 -17.68 -0.21 -0.77 16 19 C -0.06 -0.78 11.64 -16.76 -0.20 -0.97 16 20 N -0.45 -6.80 3.13 -113.76 -0.36 -7.16 16 21 C 0.11 1.63 5.79 -3.92 -0.02 1.61 16 22 C 0.07 1.21 4.32 -67.93 -0.29 0.92 16 23 C -0.17 -2.84 9.80 -26.70 -0.26 -3.10 16 24 C -0.21 -3.19 9.50 -26.69 -0.25 -3.44 16 25 H 0.27 7.32 8.32 -40.82 -0.34 6.98 16 26 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 27 H 0.09 1.66 7.79 -51.93 -0.40 1.26 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.10 1.48 4.70 -51.93 -0.24 1.23 16 33 H 0.09 1.37 8.12 -51.93 -0.42 0.95 16 34 H 0.10 1.69 6.24 -51.93 -0.32 1.36 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.11 2.04 6.76 -51.93 -0.35 1.69 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -31.74 306.95 -8.65 -40.38 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.04 Total: 5.73 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.15 Total: -4.12 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.13 Total: -48.50 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.74 -8.65 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615728137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.781 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds