Wall clock time and date at job start Mon Mar 30 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48501 * 109.47315 * 240.00031 * 3 2 1 5 5 H 1.48501 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46938 * 119.99872 * 3 2 1 7 7 C 1.38950 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99987 * 160.57906 * 7 2 1 9 9 N 1.37106 * 119.99785 * 340.56396 * 7 2 1 10 10 C 1.34772 * 120.00288 * 317.29953 * 9 7 2 11 11 O 1.21293 * 119.99778 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99718 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.47001 * 300.00056 * 12 10 9 14 14 C 1.53156 * 109.46473 * 180.02562 * 12 10 9 15 15 C 1.53400 * 109.24160 * 170.50929 * 14 12 10 16 16 C 1.51037 * 108.21350 * 48.80958 * 15 14 12 17 17 N 1.30093 * 127.38942 * 164.02128 * 16 15 14 18 18 C 1.34286 * 109.21056 * 180.10213 * 17 16 15 19 19 C 1.34847 * 108.07508 * 359.97438 * 18 17 16 20 20 N 1.35425 * 123.98391 * 344.08127 * 16 15 14 21 21 C 1.46472 * 124.82174 * 359.83988 * 20 16 15 22 22 C 1.46504 * 119.99216 * 137.29412 * 9 7 2 23 23 C 1.52994 * 117.50161 * 354.18988 * 22 9 7 24 24 C 1.53006 * 117.49823 * 62.85107 * 22 9 7 25 25 H 0.96996 * 120.00079 * 355.09102 * 1 2 3 26 26 H 1.08993 * 109.51280 * 290.43239 * 14 12 10 27 27 H 1.09000 * 109.51002 * 50.58237 * 14 12 10 28 28 H 1.08998 * 109.70135 * 289.13261 * 15 14 12 29 29 H 1.09006 * 109.72224 * 168.50149 * 15 14 12 30 30 H 1.08003 * 125.96210 * 179.97438 * 18 17 16 31 31 H 1.08002 * 126.65760 * 179.97438 * 19 18 17 32 32 H 1.09000 * 109.58486 * 223.10068 * 21 20 16 33 33 H 1.08993 * 109.58616 * 102.68292 * 21 20 16 34 34 H 1.08997 * 115.54373 * 208.50720 * 22 9 7 35 35 H 1.09006 * 117.49533 * 214.99956 * 23 22 9 36 36 H 1.09004 * 117.50214 * 0.02562 * 23 22 9 37 37 H 1.09003 * 117.49668 * 359.96994 * 24 22 9 38 38 H 1.08994 * 117.50078 * 144.97024 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0428 -1.2298 -0.3115 9 7 1.3819 -2.3570 0.3941 10 6 0.5802 -2.3517 1.4774 11 8 0.4137 -1.3263 2.1035 12 6 -0.1093 -3.6197 1.9106 13 1 -0.7545 -3.9751 1.1072 14 6 -0.9538 -3.3410 3.1576 15 6 -1.8341 -4.5615 3.4551 16 6 -0.9614 -5.7936 3.4169 17 7 -1.2408 -6.9744 3.8861 18 6 -0.2044 -7.7972 3.6576 19 6 0.7545 -7.0953 3.0204 20 7 0.2759 -5.8281 2.8675 21 6 0.9414 -4.6880 2.2330 22 6 1.5835 -3.5955 -0.3621 23 6 2.3933 -3.5087 -1.6573 24 6 3.0018 -4.1671 -0.4166 25 1 -0.4850 0.8369 0.0719 26 1 -0.2974 -3.1501 4.0065 27 1 -1.5858 -2.4704 2.9821 28 1 -2.6173 -4.6421 2.7014 29 1 -2.2830 -4.4591 4.4431 30 1 -0.1487 -8.8393 3.9357 31 1 1.7155 -7.4651 2.6946 32 1 1.4256 -5.0136 1.3123 33 1 1.6859 -4.2746 2.9132 34 1 0.7561 -4.3044 -0.3323 35 1 2.0985 -4.1604 -2.4798 36 1 2.7765 -2.5301 -1.9467 37 1 3.7849 -3.6214 0.1098 38 1 3.1073 -5.2519 -0.4224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615728137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:40 Heat of formation + Delta-G solvation = 47.769257 kcal Electronic energy + Delta-G solvation = -22049.696677 eV Core-core repulsion = 18893.753996 eV Total energy + Delta-G solvation = -3155.942682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.25295 -40.77065 -38.06408 -37.01192 -34.74802 -34.16652 -32.93373 -30.98554 -29.42135 -27.06309 -25.52927 -23.84830 -23.11900 -22.76341 -22.25094 -21.15019 -19.87411 -18.48384 -17.96085 -17.85262 -16.80974 -16.50925 -16.22570 -15.74979 -15.42441 -15.10944 -15.06745 -14.75185 -14.49957 -14.46740 -13.89880 -13.60496 -13.11779 -12.96220 -12.78642 -12.61083 -12.54548 -12.24802 -12.17970 -12.11884 -11.97429 -11.64138 -11.26448 -10.93036 -10.72919 -10.52617 -10.01281 -9.23231 -9.05785 -8.20319 -6.01328 1.15729 1.37716 1.45000 1.48754 1.80262 2.17812 2.20883 2.35741 2.93370 3.08446 3.26378 3.39009 3.58611 3.65691 3.71268 4.02353 4.03312 4.17276 4.24958 4.28017 4.33629 4.41968 4.46882 4.60794 4.67618 4.77234 4.87441 4.92668 4.99486 5.08559 5.18646 5.25743 5.43957 5.45402 5.48854 5.91448 6.16425 6.21808 6.99933 7.14078 7.18225 7.64623 8.27879 8.84814 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.006041 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.561069 B = 4633.783392 C = 5434.092765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.024 3.976 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.353 4.353 8 H 0.082 0.918 9 N -0.437 5.437 10 C 0.478 3.522 11 O -0.575 6.575 12 C -0.102 4.102 13 H 0.094 0.906 14 C -0.093 4.093 15 C -0.025 4.025 16 C 0.188 3.812 17 N -0.523 5.523 18 C -0.054 4.054 19 C -0.049 4.049 20 N -0.453 5.453 21 C 0.121 3.879 22 C 0.039 3.961 23 C -0.173 4.173 24 C -0.177 4.177 25 H 0.259 0.741 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.192 0.808 31 H 0.209 0.791 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -13.204 0.945 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.182 4.182 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.480 4.480 8 H 0.100 0.900 9 N -0.157 5.157 10 C 0.266 3.734 11 O -0.456 6.456 12 C -0.124 4.124 13 H 0.112 0.888 14 C -0.132 4.132 15 C -0.064 4.064 16 C -0.074 4.074 17 N -0.243 5.243 18 C -0.202 4.202 19 C -0.182 4.182 20 N -0.135 5.135 21 C -0.001 4.001 22 C -0.066 4.066 23 C -0.211 4.211 24 C -0.216 4.216 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.209 0.791 31 H 0.225 0.775 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.058 -12.655 1.494 12.908 hybrid contribution 0.940 1.460 -0.442 1.792 sum 2.998 -11.195 1.052 11.637 Atomic orbital electron populations 1.69965 1.07854 1.28058 1.44378 1.25934 0.95353 1.02361 0.94574 0.85503 0.78256 0.78805 0.78719 1.18234 1.21634 1.20756 1.19091 0.95016 0.85681 1.48206 0.90028 1.42993 1.43316 1.07189 1.22211 1.20126 0.82940 0.89180 0.81182 1.90508 1.63615 1.35398 1.56067 1.21386 0.97401 0.93689 0.99963 0.88751 1.21332 0.98148 0.97801 0.95913 1.20215 0.95369 0.85919 1.04895 1.23573 0.86968 0.96476 1.00388 1.70019 1.29592 1.01036 1.23605 1.22829 0.90778 1.01086 1.05461 1.23169 1.03328 0.83673 1.07999 1.45563 1.14662 1.10198 1.43102 1.22085 0.94281 0.83902 0.99812 1.22049 0.95218 0.90171 0.99144 1.23165 1.03655 1.02449 0.91798 1.23425 0.95741 1.01068 1.01326 0.93200 0.92156 0.90903 0.88445 0.87591 0.79096 0.77457 0.86039 0.90181 0.86080 0.86650 0.89962 0.90068 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.92 11.68 21.66 0.25 -50.66 16 2 C 0.02 1.33 4.34 84.93 0.37 1.70 16 3 Si 0.96 44.18 29.60 68.60 2.03 46.21 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.35 -18.27 7.90 84.04 0.66 -17.61 16 8 H 0.08 4.06 7.30 -2.91 -0.02 4.04 16 9 N -0.44 -20.05 2.85 -613.13 -1.75 -21.80 16 10 C 0.48 22.47 6.36 87.66 0.56 23.03 16 11 O -0.58 -32.62 13.48 -3.07 -0.04 -32.66 16 12 C -0.10 -3.59 1.75 -11.40 -0.02 -3.61 16 13 H 0.09 3.21 7.54 -2.39 -0.02 3.20 16 14 C -0.09 -3.14 4.68 30.78 0.14 -3.00 16 15 C -0.03 -0.71 6.33 30.09 0.19 -0.52 16 16 C 0.19 5.74 7.65 138.23 1.06 6.79 16 17 N -0.52 -16.48 11.24 -187.52 -2.11 -18.59 16 18 C -0.05 -1.38 11.87 83.54 0.99 -0.38 16 19 C -0.05 -1.11 11.64 83.22 0.97 -0.14 16 20 N -0.45 -12.50 3.13 -513.83 -1.61 -14.11 16 21 C 0.12 3.45 5.79 86.47 0.50 3.95 16 22 C 0.04 1.33 4.32 44.99 0.19 1.52 16 23 C -0.17 -5.31 9.80 30.62 0.30 -5.01 16 24 C -0.18 -4.72 9.50 30.62 0.29 -4.43 16 25 H 0.26 14.89 8.32 -92.71 -0.77 14.11 16 26 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 27 H 0.07 2.73 7.79 -2.39 -0.02 2.71 16 28 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 30 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 31 H 0.21 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.12 3.01 4.70 -2.39 -0.01 3.00 16 33 H 0.08 2.41 8.12 -2.39 -0.02 2.39 16 34 H 0.12 3.64 6.24 -2.39 -0.01 3.62 16 35 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.08 3.00 6.76 -2.39 -0.02 2.98 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.13 2.37 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -71.26 306.95 4.05 -67.21 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.07 Total: 22.11 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.21 Total: 2.30 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -5.21 Total: -105.16 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.04 Total: -32.66 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -71.26 4.05 -67.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615728137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.979 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds