Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86793 * 119.99866 * 2 1 4 4 H 1.48508 * 109.47464 * 274.98237 * 3 2 1 5 5 H 1.48497 * 109.47452 * 34.98561 * 3 2 1 6 6 H 1.48508 * 109.47127 * 154.98544 * 3 2 1 7 7 C 1.38979 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00212 * 185.93309 * 7 2 1 9 9 N 1.37327 * 120.00372 * 5.93274 * 7 2 1 10 10 C 1.36488 * 126.07066 * 174.13657 * 9 7 2 11 11 C 1.35686 * 107.50756 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.08204 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99764 * 180.02562 * 12 11 10 14 14 O 1.21304 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99798 * 179.72414 * 13 12 11 16 16 C 1.55928 * 115.92205 * 298.21233 * 15 13 12 17 17 C 1.58475 * 103.90681 * 199.42986 * 16 15 13 18 18 C 1.55929 * 103.90542 * 359.97438 * 17 16 15 19 19 C 1.55923 * 104.49886 * 289.45290 * 18 17 16 20 20 C 1.54586 * 104.64340 * 71.08748 * 19 18 17 21 21 C 1.56948 * 101.40743 * 33.75337 * 18 17 16 22 22 C 1.40646 * 107.83426 * 0.22793 * 11 10 9 23 23 N 1.30914 * 108.38784 * 359.61390 * 22 11 10 24 24 H 0.96997 * 119.99732 * 359.97438 * 1 2 3 25 25 H 1.07995 * 126.25059 * 0.05303 * 10 9 7 26 26 H 0.97001 * 120.00099 * 359.97438 * 12 11 10 27 27 H 1.08997 * 110.40215 * 318.75917 * 16 15 13 28 28 H 1.09006 * 110.40377 * 81.17667 * 16 15 13 29 29 H 1.09000 * 110.98569 * 241.34028 * 17 16 15 30 30 H 1.08995 * 110.62565 * 118.48444 * 17 16 15 31 31 H 1.09003 * 115.92119 * 160.57020 * 18 17 16 32 32 H 1.09000 * 110.40737 * 312.29877 * 19 18 17 33 33 H 1.09005 * 110.49923 * 189.92365 * 19 18 17 34 34 H 1.08996 * 110.40496 * 241.21049 * 20 19 18 35 35 H 1.08996 * 110.50429 * 118.83834 * 20 19 18 36 36 H 1.09005 * 112.02878 * 189.50018 * 21 18 17 37 37 H 1.09003 * 112.03218 * 62.97580 * 21 18 17 38 38 H 1.07998 * 125.80732 * 179.75205 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1073 -1.3948 5 1 1.5011 2.6199 0.8027 6 1 3.5933 1.4120 0.5921 7 6 2.0079 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0961 9 7 1.3268 -2.3897 -0.1240 10 6 1.8862 -3.6281 -0.2519 11 6 0.8732 -4.5258 -0.3463 12 7 1.0109 -5.9175 -0.4911 13 6 -0.0847 -6.6980 -0.5739 14 8 -1.1896 -6.1999 -0.5231 15 6 0.0629 -8.1891 -0.7354 16 6 0.7877 -8.6659 -2.0310 17 6 0.3459 -10.1806 -2.1790 18 6 -0.5873 -10.4203 -0.9530 19 6 0.3720 -10.4078 0.2761 20 6 0.8030 -8.9303 0.4205 21 6 -1.2697 -9.0149 -0.8029 22 6 -0.3391 -3.8159 -0.2794 23 7 -0.0653 -2.5432 -0.1417 24 1 -0.4849 0.8400 0.0004 25 1 2.9423 -3.8526 -0.2734 26 1 1.8944 -6.3158 -0.5321 27 1 0.4631 -8.0749 -2.8874 28 1 1.8687 -8.5976 -1.9088 29 1 1.2088 -10.8451 -2.1348 30 1 -0.2018 -10.3317 -3.1092 31 1 -1.2583 -11.2763 -1.0251 32 1 1.2397 -11.0400 0.0875 33 1 -0.1517 -10.7402 1.1725 34 1 1.8824 -8.8360 0.3028 35 1 0.4909 -8.5343 1.3869 36 1 -1.8462 -8.9368 0.1190 37 1 -1.8674 -8.7552 -1.6766 38 1 -1.3278 -4.2476 -0.3306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751427215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = 44.896673 kcal Electronic energy + Delta-G solvation = -21005.464987 eV Core-core repulsion = 17849.397741 eV Total energy + Delta-G solvation = -3156.067246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.62536 -39.51250 -37.85058 -34.14980 -33.11207 -30.40230 -30.36866 -29.79151 -27.71015 -27.50541 -24.86142 -22.34830 -22.21564 -20.80753 -19.60532 -19.44273 -18.72383 -17.32400 -16.82425 -15.45041 -15.42400 -15.20615 -14.98854 -14.64244 -14.07585 -13.80247 -13.05916 -12.90884 -12.78572 -12.64721 -12.13948 -11.83182 -11.64868 -11.42935 -11.39670 -11.24926 -11.09628 -11.03103 -10.91172 -10.88389 -10.52244 -10.44125 -10.13793 -10.01685 -9.13657 -9.04330 -8.76333 -8.02263 -6.65531 -6.53725 -4.20158 2.85359 3.05079 3.06575 3.11752 3.64495 3.70142 3.90894 4.26813 4.37340 4.38856 4.54681 4.80638 4.97362 5.02567 5.03802 5.13373 5.28385 5.31148 5.33751 5.36282 5.63434 5.75073 5.81529 5.84081 5.91954 5.97839 6.13174 6.15212 6.18825 6.21976 6.27863 6.51672 6.95190 7.00569 7.17720 7.28553 7.89300 8.24337 8.33903 8.67621 8.93903 9.41387 9.70519 10.42662 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052300 B = 0.003565 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.243841 B = 7851.703019 C = 8046.867175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.325 4.325 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.084 4.084 11 C -0.059 4.059 12 N -0.622 5.622 13 C 0.527 3.473 14 O -0.534 6.534 15 C -0.097 4.097 16 C -0.108 4.108 17 C -0.117 4.117 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.110 4.110 21 C -0.093 4.093 22 C -0.034 4.034 23 N -0.261 5.261 24 H 0.274 0.726 25 H 0.145 0.855 26 H 0.395 0.605 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -17.562 -1.866 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.170 4.170 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.457 4.457 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.235 4.235 11 C -0.164 4.164 12 N -0.263 5.263 13 C 0.313 3.687 14 O -0.411 6.411 15 C -0.101 4.101 16 C -0.146 4.146 17 C -0.154 4.154 18 C -0.127 4.127 19 C -0.155 4.155 20 C -0.147 4.147 21 C -0.131 4.131 22 C -0.209 4.209 23 N -0.092 5.092 24 H 0.085 0.915 25 H 0.162 0.838 26 H 0.228 0.772 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.543 -15.859 -1.689 16.150 hybrid contribution 1.393 -0.295 -0.092 1.427 sum 3.936 -16.154 -1.781 16.721 Atomic orbital electron populations 1.70229 1.06147 1.27916 1.35378 1.25635 0.95676 1.00238 0.95496 0.85820 0.79439 0.80098 0.78828 1.19662 1.20121 1.18808 1.19866 0.92122 0.80737 1.52955 0.86661 1.44536 1.03985 1.03699 1.38931 1.21258 0.96788 0.85844 1.19566 1.17311 0.94277 0.81867 1.22993 1.42507 1.08222 1.05073 1.70513 1.19523 0.84371 0.86781 0.78012 1.90589 1.25754 1.74564 1.50152 1.22894 0.98474 0.91290 0.97415 1.23235 0.99462 0.95687 0.96254 1.23246 0.98848 0.95481 0.97870 1.23569 0.96489 0.97535 0.95072 1.22605 0.98882 0.95991 0.98045 1.22603 0.99536 0.94845 0.97765 1.23295 0.94863 0.92427 1.02468 1.24103 0.98007 0.90916 1.07903 1.78241 0.90316 1.15146 1.25524 0.91512 0.83773 0.77180 0.91205 0.91252 0.91533 0.91704 0.88352 0.91647 0.91739 0.91291 0.91343 0.90704 0.90731 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.82 11.84 55.49 0.66 -21.16 16 2 C 0.05 1.22 5.50 -17.50 -0.10 1.12 16 3 Si 0.93 19.13 29.55 -169.99 -5.02 14.11 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.32 -8.71 10.24 -14.82 -0.15 -8.87 16 8 H 0.12 2.76 7.84 -52.48 -0.41 2.35 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 10 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 N -0.62 -11.38 5.47 -10.00 -0.05 -11.44 16 13 C 0.53 9.54 7.17 -10.99 -0.08 9.46 16 14 O -0.53 -11.88 13.66 5.54 0.08 -11.80 16 15 C -0.10 -1.26 1.26 -150.38 -0.19 -1.45 16 16 C -0.11 -1.16 6.07 -22.14 -0.13 -1.29 16 17 C -0.12 -1.02 6.41 -22.14 -0.14 -1.16 16 18 C -0.11 -0.98 5.14 -85.35 -0.44 -1.41 16 19 C -0.12 -1.03 6.21 -24.34 -0.15 -1.18 16 20 C -0.11 -1.17 5.86 -24.30 -0.14 -1.31 16 21 C -0.09 -1.12 5.68 -22.47 -0.13 -1.25 16 22 C -0.03 -0.91 10.85 -17.03 -0.18 -1.10 16 23 N -0.26 -7.75 10.42 30.80 0.32 -7.43 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.14 2.88 8.06 -52.49 -0.42 2.46 16 26 H 0.40 5.72 8.83 -40.82 -0.36 5.36 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.65 7.80 -51.93 -0.41 0.24 16 29 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.49 7.81 -51.93 -0.41 0.09 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.64 7.80 -51.93 -0.41 0.24 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.18 4.69 5.92 -52.49 -0.31 4.38 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -33.15 311.96 -7.19 -40.34 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.22 Total: 9.33 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.60 Total: -12.60 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.88 Total: -44.08 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.15 -7.19 -40.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751427215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.236 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds