Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86793 * 119.99866 * 2 1 4 4 H 1.48508 * 109.47464 * 274.98237 * 3 2 1 5 5 H 1.48497 * 109.47452 * 34.98561 * 3 2 1 6 6 H 1.48508 * 109.47127 * 154.98544 * 3 2 1 7 7 C 1.38979 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00212 * 185.93309 * 7 2 1 9 9 N 1.37327 * 120.00372 * 5.93274 * 7 2 1 10 10 C 1.36488 * 126.07066 * 174.13657 * 9 7 2 11 11 C 1.35686 * 107.50756 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.08204 * 179.97438 * 11 10 9 13 13 C 1.34776 * 119.99764 * 180.02562 * 12 11 10 14 14 O 1.21304 * 119.99993 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99798 * 179.72414 * 13 12 11 16 16 C 1.55928 * 115.92205 * 298.21233 * 15 13 12 17 17 C 1.58475 * 103.90681 * 199.42986 * 16 15 13 18 18 C 1.55929 * 103.90542 * 359.97438 * 17 16 15 19 19 C 1.55923 * 104.49886 * 289.45290 * 18 17 16 20 20 C 1.54586 * 104.64340 * 71.08748 * 19 18 17 21 21 C 1.56948 * 101.40743 * 33.75337 * 18 17 16 22 22 C 1.40646 * 107.83426 * 0.22793 * 11 10 9 23 23 N 1.30914 * 108.38784 * 359.61390 * 22 11 10 24 24 H 0.96997 * 119.99732 * 359.97438 * 1 2 3 25 25 H 1.07995 * 126.25059 * 0.05303 * 10 9 7 26 26 H 0.97001 * 120.00099 * 359.97438 * 12 11 10 27 27 H 1.08997 * 110.40215 * 318.75917 * 16 15 13 28 28 H 1.09006 * 110.40377 * 81.17667 * 16 15 13 29 29 H 1.09000 * 110.98569 * 241.34028 * 17 16 15 30 30 H 1.08995 * 110.62565 * 118.48444 * 17 16 15 31 31 H 1.09003 * 115.92119 * 160.57020 * 18 17 16 32 32 H 1.09000 * 110.40737 * 312.29877 * 19 18 17 33 33 H 1.09005 * 110.49923 * 189.92365 * 19 18 17 34 34 H 1.08996 * 110.40496 * 241.21049 * 20 19 18 35 35 H 1.08996 * 110.50429 * 118.83834 * 20 19 18 36 36 H 1.09005 * 112.02878 * 189.50018 * 21 18 17 37 37 H 1.09003 * 112.03218 * 62.97580 * 21 18 17 38 38 H 1.07998 * 125.80732 * 179.75205 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1073 -1.3948 5 1 1.5011 2.6199 0.8027 6 1 3.5933 1.4120 0.5921 7 6 2.0079 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0961 9 7 1.3268 -2.3897 -0.1240 10 6 1.8862 -3.6281 -0.2519 11 6 0.8732 -4.5258 -0.3463 12 7 1.0109 -5.9175 -0.4911 13 6 -0.0847 -6.6980 -0.5739 14 8 -1.1896 -6.1999 -0.5231 15 6 0.0629 -8.1891 -0.7354 16 6 0.7877 -8.6659 -2.0310 17 6 0.3459 -10.1806 -2.1790 18 6 -0.5873 -10.4203 -0.9530 19 6 0.3720 -10.4078 0.2761 20 6 0.8030 -8.9303 0.4205 21 6 -1.2697 -9.0149 -0.8029 22 6 -0.3391 -3.8159 -0.2794 23 7 -0.0653 -2.5432 -0.1417 24 1 -0.4849 0.8400 0.0004 25 1 2.9423 -3.8526 -0.2734 26 1 1.8944 -6.3158 -0.5321 27 1 0.4631 -8.0749 -2.8874 28 1 1.8687 -8.5976 -1.9088 29 1 1.2088 -10.8451 -2.1348 30 1 -0.2018 -10.3317 -3.1092 31 1 -1.2583 -11.2763 -1.0251 32 1 1.2397 -11.0400 0.0875 33 1 -0.1517 -10.7402 1.1725 34 1 1.8824 -8.8360 0.3028 35 1 0.4909 -8.5343 1.3869 36 1 -1.8462 -8.9368 0.1190 37 1 -1.8674 -8.7552 -1.6766 38 1 -1.3278 -4.2476 -0.3306 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751427215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = 23.280087 kcal Electronic energy + Delta-G solvation = -21006.402352 eV Core-core repulsion = 17849.397741 eV Total energy + Delta-G solvation = -3157.004612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.92412 -41.18156 -39.32528 -35.93284 -34.96836 -32.30303 -31.15204 -31.01724 -29.27575 -28.58751 -26.80452 -23.66834 -23.08966 -22.75652 -21.32011 -20.48328 -20.05792 -19.04354 -18.03594 -17.41908 -16.83061 -16.45925 -16.10845 -15.83211 -15.62122 -15.44312 -14.88409 -14.83895 -13.80296 -13.52494 -13.45452 -13.32026 -13.13223 -12.97113 -12.80631 -12.60327 -12.17013 -12.06825 -11.95791 -11.85575 -11.83053 -11.76867 -11.25223 -11.03036 -10.84967 -10.84328 -10.55469 -10.11457 -8.54255 -8.48317 -6.25680 1.20249 1.39466 1.50900 1.58111 1.85083 2.05114 2.31431 2.49448 2.90749 3.07160 3.36425 3.54006 3.60627 4.04183 4.20151 4.26369 4.40162 4.44040 4.49787 4.57124 4.60484 4.62104 4.69568 4.85414 4.99421 5.04915 5.07405 5.10747 5.16360 5.22029 5.27454 5.28276 5.38190 5.42752 5.47113 5.47706 5.95097 6.30355 6.72278 6.76461 7.40077 7.46400 7.66670 8.51498 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052300 B = 0.003565 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.243841 B = 7851.703019 C = 8046.867175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.021 2.979 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.241 1.241 7 C -0.356 4.356 8 H 0.142 0.858 9 N -0.167 5.167 10 C -0.080 4.080 11 C -0.046 4.046 12 N -0.612 5.612 13 C 0.523 3.477 14 O -0.582 6.582 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.103 4.103 22 C -0.062 4.062 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.189 0.811 26 H 0.418 0.582 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 -19.680 -2.141 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.164 1.164 7 C -0.486 4.486 8 H 0.159 0.841 9 N 0.064 4.936 10 C -0.230 4.230 11 C -0.152 4.152 12 N -0.256 5.256 13 C 0.311 3.689 14 O -0.462 6.462 15 C -0.106 4.106 16 C -0.145 4.145 17 C -0.147 4.147 18 C -0.113 4.113 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.237 4.237 23 N -0.143 5.143 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.254 0.746 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.755 -18.044 -1.966 19.042 hybrid contribution 0.347 0.251 -0.010 0.429 sum 6.103 -17.793 -1.976 18.914 Atomic orbital electron populations 1.70414 1.08542 1.29126 1.37259 1.26917 0.96449 1.04424 0.94051 0.84554 0.78533 0.74012 0.78933 1.19157 1.20158 1.16427 1.20654 0.93464 0.81020 1.53510 0.84065 1.44849 1.03529 1.05253 1.40011 1.21995 0.98763 0.84568 1.17685 1.17409 0.92816 0.84310 1.20663 1.42472 1.09780 1.02928 1.70448 1.20601 0.83359 0.89015 0.75893 1.90568 1.27714 1.76008 1.51862 1.22849 1.00097 0.87316 1.00303 1.23286 1.00356 0.97008 0.93831 1.23255 0.99680 0.93945 0.97794 1.23597 0.96360 0.95766 0.95596 1.22614 0.99712 0.94569 0.98023 1.22649 1.00414 0.95817 0.95560 1.23368 0.94583 0.95100 1.01064 1.24113 0.98942 0.91200 1.09473 1.78137 0.92303 1.16510 1.27378 0.91394 0.79393 0.74565 0.92982 0.89139 0.88947 0.91294 0.86318 0.89080 0.91356 0.89167 0.93091 0.92268 0.92306 0.81964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.58 11.84 21.66 0.26 -48.32 16 2 C -0.01 -0.36 5.50 84.95 0.47 0.10 16 3 Si 1.02 39.03 29.55 68.60 2.03 41.05 16 4 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.28 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 7 C -0.36 -19.12 10.24 84.01 0.86 -18.26 16 8 H 0.14 6.55 7.84 -2.91 -0.02 6.53 16 9 N -0.17 -9.51 3.74 -190.02 -0.71 -10.22 16 10 C -0.08 -3.78 11.49 83.38 0.96 -2.82 16 11 C -0.05 -2.19 6.90 37.73 0.26 -1.93 16 12 N -0.61 -22.11 5.47 -303.92 -1.66 -23.77 16 13 C 0.52 19.22 7.17 87.66 0.63 19.85 16 14 O -0.58 -27.35 13.66 -3.10 -0.04 -27.39 16 15 C -0.10 -2.54 1.26 -49.51 -0.06 -2.60 16 16 C -0.11 -2.02 6.07 33.57 0.20 -1.81 16 17 C -0.11 -1.48 6.41 33.57 0.22 -1.27 16 18 C -0.10 -1.41 5.14 -7.38 -0.04 -1.45 16 19 C -0.11 -1.53 6.21 32.15 0.20 -1.33 16 20 C -0.11 -2.00 5.86 32.17 0.19 -1.81 16 21 C -0.10 -2.46 5.68 33.35 0.19 -2.27 16 22 C -0.06 -3.55 10.85 85.42 0.93 -2.62 16 23 N -0.31 -19.37 10.42 -56.47 -0.59 -19.95 16 24 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.19 6.97 8.06 -2.91 -0.02 6.94 16 26 H 0.42 11.16 8.83 -92.71 -0.82 10.34 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.09 1.32 7.80 -2.38 -0.02 1.30 16 29 H 0.09 0.86 7.82 -2.39 -0.02 0.84 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 0.86 7.81 -2.39 -0.02 0.84 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.16 9.46 5.92 -2.91 -0.02 9.44 16 Total: -1.00 -77.72 311.96 4.54 -73.18 By element: Atomic # 1 Polarization: 33.39 SS G_CDS: 0.26 Total: 33.64 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.00 Total: -18.23 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -2.70 Total: -102.26 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.04 Total: -27.39 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.05 kcal Total: -77.72 4.54 -73.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751427215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.461 kcal (2) G-P(sol) polarization free energy of solvation -77.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds