Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46817 * 299.99718 * 3 2 1 6 6 H 1.48494 * 109.47157 * 59.99318 * 3 2 1 7 7 C 1.38992 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.37324 * 119.99487 * 0.02562 * 7 2 1 10 10 C 1.36491 * 126.06266 * 180.02562 * 9 7 2 11 11 C 1.35682 * 107.50432 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08213 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00323 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99775 * 356.64189 * 13 12 11 15 15 C 1.50703 * 120.00219 * 176.64106 * 13 12 11 16 16 C 1.52998 * 109.47505 * 276.54067 * 15 13 12 17 17 C 1.53000 * 117.51444 * 348.75295 * 16 15 13 18 18 C 1.53002 * 117.49555 * 57.38074 * 16 15 13 19 19 C 1.52999 * 109.47176 * 156.54004 * 15 13 12 20 20 C 1.53004 * 117.49907 * 254.10220 * 19 15 13 21 21 C 1.53003 * 117.49952 * 185.44606 * 19 15 13 22 22 C 1.40644 * 107.83677 * 0.25984 * 11 10 9 23 23 N 1.30907 * 108.38523 * 359.55658 * 22 11 10 24 24 H 0.97001 * 120.00452 * 0.02562 * 1 2 3 25 25 H 1.07995 * 126.25121 * 0.04078 * 10 9 7 26 26 H 0.97005 * 120.00026 * 359.97438 * 12 11 10 27 27 H 1.08999 * 109.47060 * 36.54127 * 15 13 12 28 28 H 1.08992 * 115.55140 * 203.05536 * 16 15 13 29 29 H 1.09002 * 117.50212 * 214.96748 * 17 16 15 30 30 H 1.09001 * 117.50222 * 359.97438 * 17 16 15 31 31 H 1.08995 * 117.50306 * 359.97438 * 18 16 15 32 32 H 1.09003 * 117.49313 * 144.98082 * 18 16 15 33 33 H 1.09002 * 115.55269 * 39.76880 * 19 15 13 34 34 H 1.09003 * 117.49722 * 0.02562 * 20 19 15 35 35 H 1.09001 * 117.49996 * 145.01884 * 20 19 15 36 36 H 1.09000 * 117.49710 * 214.97890 * 21 19 15 37 37 H 1.09002 * 117.49620 * 359.96746 * 21 19 15 38 38 H 1.08000 * 125.80860 * 179.69687 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3964 -1.2126 6 1 1.8880 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0015 11 6 0.8578 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1101 -6.7181 -0.0010 14 8 -1.2116 -6.2139 0.0592 15 6 0.0294 -8.2168 -0.0774 16 6 0.1935 -8.6399 -1.5385 17 6 -0.0736 -7.5851 -2.6141 18 6 1.3596 -8.0345 -2.3226 19 6 -1.2215 -8.8759 0.5070 20 6 -1.0990 -9.5242 1.8875 21 6 -1.2210 -10.4003 0.6382 22 6 -0.3512 -3.8199 -0.0071 23 7 -0.0715 -2.5410 -0.0010 24 1 -0.4851 0.8400 -0.0004 25 1 2.9301 -3.8708 0.0031 26 1 1.8707 -6.3427 0.0010 27 1 0.9047 -8.5297 0.4919 28 1 -0.0837 -9.6696 -1.7637 29 1 -0.5265 -7.9209 -3.5470 30 1 -0.3667 -6.5895 -2.2810 31 1 2.0096 -7.3346 -1.7977 32 1 1.8497 -8.6663 -3.0634 33 1 -2.1667 -8.3923 0.2603 34 1 -0.1273 -9.4807 2.3795 35 1 -1.9637 -9.4674 2.5487 36 1 -2.1659 -10.9195 0.4781 37 1 -0.3297 -10.9336 0.3077 38 1 -1.3418 -4.2500 -0.0143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753066222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = 96.909521 kcal Electronic energy + Delta-G solvation = -20987.884705 eV Core-core repulsion = 17834.072905 eV Total energy + Delta-G solvation = -3153.811800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33565 -39.18420 -37.12228 -36.26228 -34.12884 -33.07828 -30.28142 -29.40157 -27.47070 -24.83154 -22.73717 -22.39180 -21.68392 -21.42432 -20.74553 -19.37146 -19.01091 -17.49855 -16.84688 -16.02623 -15.44422 -15.31252 -14.88914 -14.64063 -13.99978 -13.89122 -13.62916 -13.13415 -12.88912 -12.58357 -12.03203 -11.66083 -11.59722 -11.57044 -11.43386 -11.34858 -11.24236 -10.91771 -10.50834 -10.49221 -10.35499 -10.09038 -10.01621 -9.88916 -9.14135 -9.01166 -8.76459 -8.02790 -6.66073 -6.53582 -4.20313 2.86553 3.05797 3.06192 3.12136 3.52439 3.66954 3.75372 3.84374 4.01735 4.45395 4.54743 4.72422 4.78756 4.92738 4.98784 4.99687 5.04410 5.09835 5.23323 5.46594 5.55529 5.58902 5.72019 5.73473 5.86737 5.97567 6.06095 6.14308 6.26846 6.29468 6.35004 6.50142 6.94217 6.99535 7.16965 7.28043 7.88811 8.22449 8.32620 8.67125 8.91985 9.40922 9.70464 10.42538 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035370 B = 0.003927 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.436790 B = 7127.817106 C = 7444.447720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.085 4.085 11 C -0.057 4.057 12 N -0.626 5.626 13 C 0.509 3.491 14 O -0.532 6.532 15 C -0.042 4.042 16 C -0.140 4.140 17 C -0.176 4.176 18 C -0.182 4.182 19 C -0.128 4.128 20 C -0.180 4.180 21 C -0.179 4.179 22 C -0.034 4.034 23 N -0.260 5.260 24 H 0.274 0.726 25 H 0.144 0.856 26 H 0.394 0.606 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.309 -16.132 -1.168 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.236 4.236 11 C -0.163 4.163 12 N -0.269 5.269 13 C 0.295 3.705 14 O -0.409 6.409 15 C -0.064 4.064 16 C -0.159 4.159 17 C -0.213 4.213 18 C -0.219 4.219 19 C -0.146 4.146 20 C -0.217 4.217 21 C -0.216 4.216 22 C -0.209 4.209 23 N -0.092 5.092 24 H 0.084 0.916 25 H 0.161 0.839 26 H 0.227 0.773 27 H 0.106 0.894 28 H 0.131 0.869 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.840 -14.415 -1.126 14.575 hybrid contribution 1.340 -0.369 0.006 1.389 sum 3.179 -14.783 -1.120 15.163 Atomic orbital electron populations 1.70225 1.06114 1.27808 1.35559 1.25632 0.95688 1.00227 0.95525 0.85777 0.79626 0.80352 0.78458 1.18719 1.19929 1.19938 1.19905 0.91644 0.80583 1.53450 0.86647 1.44535 1.04019 1.03273 1.39287 1.21254 0.96790 0.85448 1.20092 1.17282 0.94222 0.81405 1.23385 1.42666 1.08119 1.04493 1.71603 1.20104 0.84502 0.88177 0.77690 1.90582 1.25925 1.74779 1.49568 1.20376 0.98188 0.92210 0.95620 1.22096 1.04235 0.98769 0.90757 1.23134 0.98542 1.00055 0.99600 1.23044 0.91724 1.03756 1.03375 1.22006 0.99393 0.93943 0.99271 1.23024 1.03126 1.04476 0.91064 1.22953 1.02986 0.93129 1.02565 1.24085 0.98011 0.90726 1.08126 1.78243 0.90142 1.15122 1.25650 0.91560 0.83853 0.77257 0.89363 0.86921 0.88853 0.87744 0.88657 0.88715 0.86299 0.88921 0.88775 0.88852 0.88871 0.80831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.73 11.81 55.50 0.66 -21.08 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 19.08 29.55 -169.99 -5.02 14.05 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 7 C -0.32 -8.64 10.25 -14.81 -0.15 -8.79 16 8 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 9 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 10 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 11 C -0.06 -1.33 6.90 -83.84 -0.58 -1.90 16 12 N -0.63 -11.09 4.84 -10.00 -0.05 -11.14 16 13 C 0.51 8.84 4.59 -10.98 -0.05 8.79 16 14 O -0.53 -11.36 12.85 5.54 0.07 -11.29 16 15 C -0.04 -0.54 2.63 -91.77 -0.24 -0.78 16 16 C -0.14 -1.59 5.61 -90.62 -0.51 -2.10 16 17 C -0.18 -2.35 9.72 -26.73 -0.26 -2.61 16 18 C -0.18 -2.02 9.95 -26.73 -0.27 -2.29 16 19 C -0.13 -1.57 4.80 -90.62 -0.44 -2.01 16 20 C -0.18 -1.91 10.18 -26.69 -0.27 -2.18 16 21 C -0.18 -1.68 9.74 -26.69 -0.26 -1.94 16 22 C -0.03 -0.90 10.85 -17.04 -0.18 -1.09 16 23 N -0.26 -7.65 10.40 30.80 0.32 -7.33 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 26 H 0.39 5.54 7.82 -40.82 -0.32 5.22 16 27 H 0.09 0.95 7.95 -51.93 -0.41 0.54 16 28 H 0.11 1.09 7.74 -51.93 -0.40 0.69 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.80 6.42 -51.93 -0.33 1.46 16 31 H 0.10 1.10 6.49 -51.93 -0.34 0.76 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.12 1.72 7.47 -51.93 -0.39 1.33 16 34 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.17 4.60 5.93 -52.49 -0.31 4.29 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -32.57 319.53 -7.75 -40.32 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -5.01 Total: 13.65 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -3.49 Total: -17.99 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.88 Total: -43.56 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.07 Total: -11.29 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.57 -7.75 -40.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753066222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.231 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds