Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31290 * 1 3 3 Si 1.86803 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47184 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46817 * 299.99718 * 3 2 1 6 6 H 1.48494 * 109.47157 * 59.99318 * 3 2 1 7 7 C 1.38992 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00125 * 180.02562 * 7 2 1 9 9 N 1.37324 * 119.99487 * 0.02562 * 7 2 1 10 10 C 1.36491 * 126.06266 * 180.02562 * 9 7 2 11 11 C 1.35682 * 107.50432 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.08213 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00323 * 180.02562 * 12 11 10 14 14 O 1.21300 * 119.99775 * 356.64189 * 13 12 11 15 15 C 1.50703 * 120.00219 * 176.64106 * 13 12 11 16 16 C 1.52998 * 109.47505 * 276.54067 * 15 13 12 17 17 C 1.53000 * 117.51444 * 348.75295 * 16 15 13 18 18 C 1.53002 * 117.49555 * 57.38074 * 16 15 13 19 19 C 1.52999 * 109.47176 * 156.54004 * 15 13 12 20 20 C 1.53004 * 117.49907 * 254.10220 * 19 15 13 21 21 C 1.53003 * 117.49952 * 185.44606 * 19 15 13 22 22 C 1.40644 * 107.83677 * 0.25984 * 11 10 9 23 23 N 1.30907 * 108.38523 * 359.55658 * 22 11 10 24 24 H 0.97001 * 120.00452 * 0.02562 * 1 2 3 25 25 H 1.07995 * 126.25121 * 0.04078 * 10 9 7 26 26 H 0.97005 * 120.00026 * 359.97438 * 12 11 10 27 27 H 1.08999 * 109.47060 * 36.54127 * 15 13 12 28 28 H 1.08992 * 115.55140 * 203.05536 * 16 15 13 29 29 H 1.09002 * 117.50212 * 214.96748 * 17 16 15 30 30 H 1.09001 * 117.50222 * 359.97438 * 17 16 15 31 31 H 1.08995 * 117.50306 * 359.97438 * 18 16 15 32 32 H 1.09003 * 117.49313 * 144.98082 * 18 16 15 33 33 H 1.09002 * 115.55269 * 39.76880 * 19 15 13 34 34 H 1.09003 * 117.49722 * 0.02562 * 20 19 15 35 35 H 1.09001 * 117.49996 * 145.01884 * 20 19 15 36 36 H 1.09000 * 117.49710 * 214.97890 * 21 19 15 37 37 H 1.09002 * 117.49620 * 359.96746 * 21 19 15 38 38 H 1.08000 * 125.80860 * 179.69687 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3465 0.0006 5 1 1.8881 2.3964 -1.2126 6 1 1.8880 2.3965 1.2124 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0010 9 7 1.3212 -2.3929 0.0005 10 6 1.8750 -3.6404 0.0015 11 6 0.8578 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1101 -6.7181 -0.0010 14 8 -1.2116 -6.2139 0.0592 15 6 0.0294 -8.2168 -0.0774 16 6 0.1935 -8.6399 -1.5385 17 6 -0.0736 -7.5851 -2.6141 18 6 1.3596 -8.0345 -2.3226 19 6 -1.2215 -8.8759 0.5070 20 6 -1.0990 -9.5242 1.8875 21 6 -1.2210 -10.4003 0.6382 22 6 -0.3512 -3.8199 -0.0071 23 7 -0.0715 -2.5410 -0.0010 24 1 -0.4851 0.8400 -0.0004 25 1 2.9301 -3.8708 0.0031 26 1 1.8707 -6.3427 0.0010 27 1 0.9047 -8.5297 0.4919 28 1 -0.0837 -9.6696 -1.7637 29 1 -0.5265 -7.9209 -3.5470 30 1 -0.3667 -6.5895 -2.2810 31 1 2.0096 -7.3346 -1.7977 32 1 1.8497 -8.6663 -3.0634 33 1 -2.1667 -8.3923 0.2603 34 1 -0.1273 -9.4807 2.3795 35 1 -1.9637 -9.4674 2.5487 36 1 -2.1659 -10.9195 0.4781 37 1 -0.3297 -10.9336 0.3077 38 1 -1.3418 -4.2500 -0.0143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753066222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = 76.474207 kcal Electronic energy + Delta-G solvation = -20988.770847 eV Core-core repulsion = 17834.072905 eV Total energy + Delta-G solvation = -3154.697942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88842 -40.84773 -38.32659 -37.19928 -35.87238 -34.89764 -32.26750 -30.68638 -29.19676 -26.76351 -23.72418 -23.35561 -23.04954 -22.59883 -22.27368 -21.20673 -20.23677 -19.28993 -18.06804 -17.45268 -17.21536 -16.91003 -16.11414 -15.68913 -15.58612 -15.29926 -14.97807 -14.81023 -14.63990 -13.87468 -13.49315 -13.29815 -13.01698 -12.90946 -12.84978 -12.54292 -12.37246 -12.31062 -12.03170 -11.79534 -11.46157 -11.21307 -11.01703 -10.99571 -10.81600 -10.78878 -10.42671 -10.09952 -8.51512 -8.47165 -6.24294 1.22298 1.39497 1.54424 1.58755 1.87662 2.04574 2.28655 2.52961 2.81855 2.87326 3.07754 3.09165 3.61442 3.79677 3.85478 4.03524 4.13059 4.20654 4.23138 4.42854 4.51349 4.55749 4.66659 4.81242 4.82069 4.85197 5.00128 5.03588 5.08062 5.13466 5.23564 5.26206 5.29882 5.32239 5.38526 5.52073 5.96225 6.32507 6.74102 6.78278 7.43097 7.48400 7.69060 8.52567 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.035370 B = 0.003927 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.436790 B = 7127.817106 C = 7444.447720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.141 0.859 9 N -0.168 5.168 10 C -0.083 4.083 11 C -0.040 4.040 12 N -0.618 5.618 13 C 0.507 3.493 14 O -0.576 6.576 15 C -0.030 4.030 16 C -0.124 4.124 17 C -0.207 4.207 18 C -0.165 4.165 19 C -0.157 4.157 20 C -0.185 4.185 21 C -0.148 4.148 22 C -0.062 4.062 23 N -0.311 5.311 24 H 0.276 0.724 25 H 0.187 0.813 26 H 0.416 0.584 27 H 0.121 0.879 28 H 0.142 0.858 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.118 0.882 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.396 -18.540 -1.247 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.162 1.162 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.063 4.937 10 C -0.233 4.233 11 C -0.146 4.146 12 N -0.263 5.263 13 C 0.296 3.704 14 O -0.456 6.456 15 C -0.051 4.051 16 C -0.143 4.143 17 C -0.244 4.244 18 C -0.202 4.202 19 C -0.176 4.176 20 C -0.222 4.222 21 C -0.185 4.185 22 C -0.237 4.237 23 N -0.143 5.143 24 H 0.085 0.915 25 H 0.204 0.796 26 H 0.253 0.747 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.136 0.864 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.962 -16.889 -1.204 17.644 hybrid contribution 0.307 0.237 0.029 0.389 sum 5.269 -16.652 -1.175 17.506 Atomic orbital electron populations 1.70411 1.08494 1.28987 1.37542 1.26894 0.96457 1.04375 0.94133 0.84527 0.79075 0.74348 0.78174 1.16237 1.19789 1.19809 1.20667 0.92960 0.80907 1.54003 0.84140 1.44829 1.03552 1.04816 1.40512 1.21989 0.98764 0.84247 1.18281 1.17348 0.92627 0.83965 1.20665 1.42646 1.09717 1.02251 1.71689 1.21147 0.83447 0.90313 0.75499 1.90570 1.27863 1.76097 1.51043 1.20405 0.99698 0.87750 0.97297 1.22203 1.03776 0.99264 0.89023 1.23031 1.01508 0.98619 1.01264 1.23161 0.90457 1.03252 1.03300 1.21877 0.97792 0.96422 1.01476 1.23139 1.03690 1.04481 0.90843 1.23068 1.04585 0.90688 1.00130 1.24084 0.98937 0.90978 1.09678 1.78136 0.92119 1.16570 1.27491 0.91464 0.79589 0.74689 0.86161 0.83992 0.87705 0.92498 0.89079 0.85889 0.89677 0.87712 0.89187 0.87936 0.86370 0.82052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.65 11.81 21.66 0.26 -48.39 16 2 C -0.01 -0.38 5.50 84.95 0.47 0.08 16 3 Si 1.02 39.12 29.55 68.60 2.03 41.15 16 4 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.35 -19.05 10.25 84.01 0.86 -18.19 16 8 H 0.14 6.53 7.83 -2.91 -0.02 6.51 16 9 N -0.17 -9.49 3.74 -190.01 -0.71 -10.20 16 10 C -0.08 -3.88 11.49 83.38 0.96 -2.92 16 11 C -0.04 -1.87 6.90 37.73 0.26 -1.61 16 12 N -0.62 -21.47 4.84 -303.93 -1.47 -22.94 16 13 C 0.51 17.69 4.59 87.66 0.40 18.09 16 14 O -0.58 -26.03 12.85 -3.09 -0.04 -26.07 16 15 C -0.03 -0.70 2.63 -11.54 -0.03 -0.73 16 16 C -0.12 -2.46 5.61 -10.79 -0.06 -2.52 16 17 C -0.21 -5.40 9.72 30.60 0.30 -5.11 16 18 C -0.16 -3.15 9.95 30.60 0.30 -2.84 16 19 C -0.16 -3.65 4.80 -10.79 -0.05 -3.70 16 20 C -0.18 -3.51 10.18 30.62 0.31 -3.19 16 21 C -0.15 -2.24 9.74 30.62 0.30 -1.94 16 22 C -0.06 -3.47 10.85 85.42 0.93 -2.55 16 23 N -0.31 -19.25 10.40 -56.47 -0.59 -19.84 16 24 H 0.28 14.89 8.31 -92.71 -0.77 14.12 16 25 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 26 H 0.42 10.66 7.82 -92.70 -0.72 9.93 16 27 H 0.12 2.07 7.95 -2.39 -0.02 2.05 16 28 H 0.14 2.07 7.74 -2.39 -0.02 2.05 16 29 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 2.06 6.42 -2.39 -0.02 2.04 16 31 H 0.09 1.82 6.49 -2.39 -0.02 1.80 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.57 7.47 -2.39 -0.02 2.55 16 34 H 0.10 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.16 9.31 5.93 -2.91 -0.02 9.29 16 Total: -1.00 -77.53 319.53 4.78 -72.75 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: 0.36 Total: 40.67 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.95 Total: -27.12 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -2.51 Total: -101.37 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -77.53 4.78 -72.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753066222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.220 kcal (2) G-P(sol) polarization free energy of solvation -77.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds