Wall clock time and date at job start Mon Mar 30 2020 01:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00328 * 2 1 4 4 C 1.53496 * 114.21055 * 149.99583 * 3 2 1 5 5 N 1.47070 * 87.98202 * 139.85455 * 4 3 2 6 6 C 1.34780 * 136.05343 * 152.85076 * 5 4 3 7 7 O 1.21279 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99810 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47105 * 179.97438 * 8 6 5 10 10 C 1.37634 * 120.12947 * 265.00368 * 9 8 6 11 11 C 1.38617 * 120.24891 * 179.97438 * 10 9 8 12 12 C 1.38659 * 120.50129 * 359.97438 * 11 10 9 13 13 C 1.37600 * 120.24526 * 0.02562 * 12 11 10 14 14 C 1.40699 * 120.12658 * 85.25608 * 9 8 6 15 15 C 1.41401 * 120.24067 * 0.02562 * 14 9 8 16 16 H 1.07990 * 120.00395 * 330.00553 * 15 14 9 17 17 C 1.39950 * 119.99504 * 150.01031 * 15 14 9 18 18 N 1.30821 * 119.99760 * 162.08641 * 17 15 14 19 19 Si 1.86805 * 120.00101 * 342.07895 * 17 15 14 20 20 H 1.48498 * 109.46722 * 95.39543 * 19 17 15 21 21 H 1.48501 * 109.47136 * 215.39649 * 19 17 15 22 22 H 1.48503 * 109.47111 * 335.39326 * 19 17 15 23 23 C 1.47070 * 87.88527 * 333.10218 * 5 4 3 24 24 H 1.08998 * 109.46856 * 60.00367 * 1 2 3 25 25 H 1.09007 * 109.46884 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47318 * 299.99678 * 1 2 3 27 27 H 1.09004 * 113.28015 * 16.93305 * 3 2 1 28 28 H 1.09000 * 113.46253 * 25.07339 * 4 3 2 29 29 H 1.08999 * 113.52303 * 254.64786 * 4 3 2 30 30 H 1.09005 * 109.46891 * 59.99815 * 8 6 5 31 31 H 1.08996 * 109.47321 * 300.00207 * 8 6 5 32 32 H 1.08004 * 119.87814 * 0.02562 * 10 9 8 33 33 H 1.08002 * 119.75395 * 179.97438 * 11 10 9 34 34 H 1.07995 * 119.87739 * 180.02562 * 12 11 10 35 35 H 1.08000 * 120.12345 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99982 * 179.97438 * 18 17 15 37 37 H 1.08997 * 113.46070 * 141.67891 * 23 5 4 38 38 H 1.08994 * 113.46721 * 272.11485 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3739 1.3873 0.7001 5 7 3.8131 2.2901 -0.3746 6 6 4.7153 3.2837 -0.4991 7 8 5.3982 3.6052 0.4501 8 6 4.8753 3.9951 -1.8179 9 6 5.9393 5.0548 -1.6912 10 6 5.5888 6.3551 -1.4071 11 6 6.5655 7.3317 -1.2894 12 6 7.9044 7.0117 -1.4555 13 6 8.2777 5.7183 -1.7399 14 6 7.2943 4.7198 -1.8680 15 6 7.6657 3.3883 -2.1659 16 1 7.0655 2.5666 -1.8045 17 6 8.8111 3.1356 -2.9292 18 7 9.3554 1.9460 -2.9178 19 14 9.5628 4.4968 -3.9645 20 1 10.6565 5.1514 -3.2026 21 1 10.1097 3.9201 -5.2189 22 1 8.5198 5.5009 -4.2948 23 6 2.8302 1.6361 -1.2516 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.3105 2.0886 0.2916 28 1 3.9108 0.4388 0.7168 29 1 3.3324 1.8652 1.6788 30 1 3.9301 4.4611 -2.0964 31 1 5.1663 3.2774 -2.5849 32 1 4.5490 6.6154 -1.2746 33 1 6.2814 8.3497 -1.0667 34 1 8.6569 7.7805 -1.3612 35 1 9.3211 5.4713 -1.8693 36 1 10.1492 1.7707 -3.4471 37 1 2.3266 2.3255 -1.9291 38 1 3.2210 0.7547 -1.7600 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777397114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:54 Heat of formation + Delta-G solvation = -18.715116 kcal Electronic energy + Delta-G solvation = -20925.855552 eV Core-core repulsion = 17734.737140 eV Total energy + Delta-G solvation = -3191.118411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28170 -38.48471 -37.37758 -36.20299 -33.55315 -31.88042 -30.29877 -29.37685 -27.09840 -26.38548 -25.77882 -24.67547 -21.96317 -21.30332 -19.88346 -18.56171 -17.33367 -17.23955 -16.64731 -15.93513 -15.51826 -15.31237 -14.74120 -14.59375 -14.31088 -13.92725 -13.60951 -13.12622 -12.78334 -12.64092 -12.56813 -12.29761 -12.02982 -11.85014 -11.54054 -11.37171 -11.23742 -11.07922 -10.77392 -10.70030 -10.21717 -9.72199 -9.67836 -9.53330 -9.23953 -9.09334 -8.43818 -7.56600 -7.46964 -6.89847 -4.44191 2.55201 2.74825 3.03709 3.15153 3.21810 3.25519 3.35160 3.77282 4.02033 4.22255 4.53808 4.69415 4.87749 5.10219 5.12135 5.27435 5.39773 5.43372 5.50698 5.60420 5.67812 5.78135 5.79844 5.93397 6.11545 6.19660 6.27550 6.32993 6.61959 6.75852 6.93824 6.98781 7.24325 7.46866 7.69706 7.78262 7.94002 8.06963 8.18457 8.39800 8.71832 8.77890 8.85969 10.12413 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.004941 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.272599 B = 5665.581299 C = 6511.432724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.371 6.371 3 C 0.047 3.953 4 C 0.103 3.897 5 N -0.653 5.653 6 C 0.551 3.449 7 O -0.515 6.515 8 C -0.065 4.065 9 C -0.169 4.169 10 C -0.068 4.068 11 C -0.243 4.243 12 C -0.080 4.080 13 C -0.233 4.233 14 C 0.110 3.890 15 C -0.444 4.444 16 H 0.088 0.912 17 C 0.085 3.915 18 N -0.809 5.809 19 Si 0.910 3.090 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.244 1.244 23 C 0.086 3.914 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.284 0.716 37 H 0.079 0.921 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -1.835 0.725 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.012 4.012 4 C -0.020 4.020 5 N -0.394 5.394 6 C 0.342 3.658 7 O -0.388 6.388 8 C -0.104 4.104 9 C -0.171 4.171 10 C -0.086 4.086 11 C -0.262 4.262 12 C -0.098 4.098 13 C -0.252 4.252 14 C 0.107 3.893 15 C -0.473 4.473 16 H 0.106 0.894 17 C -0.134 4.134 18 N -0.433 5.433 19 Si 0.737 3.263 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.167 1.167 23 C -0.038 4.038 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.100 -1.864 1.156 14.269 hybrid contribution 0.334 0.515 -0.425 0.747 sum -13.766 -1.349 0.731 13.851 Atomic orbital electron populations 1.22828 0.80786 1.02906 1.00148 1.87939 1.19959 1.26497 1.94433 1.23979 0.94197 0.85679 0.97356 1.23045 0.91156 0.94390 0.93446 1.49446 1.40044 1.34760 1.15164 1.20784 0.76237 0.77519 0.91277 1.90708 1.42564 1.64412 1.41144 1.20222 0.98451 0.97725 0.94019 1.19071 0.92889 0.92338 1.12805 1.20424 0.97060 0.93074 0.98089 1.20327 0.93099 0.97689 1.15062 1.20604 0.95266 0.95501 0.98423 1.20999 0.97883 0.94042 1.12285 1.17484 0.90386 0.92775 0.88699 1.19423 1.07238 0.92324 1.28302 0.89397 1.26161 0.94752 0.96474 0.95994 1.69711 1.17577 1.23061 1.32995 0.86337 0.80271 0.81407 0.78314 1.19720 1.21948 1.16678 1.23366 0.88098 0.97419 0.94883 0.93769 0.89516 0.93859 0.88069 0.89351 0.90301 0.90393 0.88128 0.89104 0.88976 0.88970 0.88286 0.90575 0.90280 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.85 101.05 1.10 1.31 16 2 O -0.37 -3.93 10.76 -35.23 -0.38 -4.31 16 3 C 0.05 0.50 4.65 -26.35 -0.12 0.38 16 4 C 0.10 1.42 8.46 -8.50 -0.07 1.35 16 5 N -0.65 -10.77 3.69 -185.41 -0.68 -11.46 16 6 C 0.55 11.53 7.71 -10.99 -0.08 11.45 16 7 O -0.52 -13.16 16.81 5.56 0.09 -13.07 16 8 C -0.06 -1.29 5.02 -29.04 -0.15 -1.44 16 9 C -0.17 -4.01 4.43 -103.91 -0.46 -4.47 16 10 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 11 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 12 C -0.08 -1.83 10.02 -39.66 -0.40 -2.23 16 13 C -0.23 -5.93 7.17 -38.87 -0.28 -6.21 16 14 C 0.11 2.88 5.09 -106.82 -0.54 2.34 16 15 C -0.44 -12.27 8.56 -37.74 -0.32 -12.60 16 16 H 0.09 2.57 7.00 -52.49 -0.37 2.21 16 17 C 0.08 2.27 5.41 -17.34 -0.09 2.17 16 18 N -0.81 -22.02 13.93 55.55 0.77 -21.25 16 19 Si 0.91 21.18 24.52 -169.99 -4.17 17.01 16 20 H -0.27 -6.21 6.72 56.52 0.38 -5.83 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.24 -5.76 6.86 56.52 0.39 -5.37 16 23 C 0.09 1.04 8.26 -8.63 -0.07 0.97 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.10 0.91 7.88 -51.93 -0.41 0.50 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.10 2.03 7.12 -51.93 -0.37 1.66 16 32 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.51 4.77 -52.49 -0.25 2.26 16 36 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -32.65 320.03 -7.03 -39.68 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.21 Total: 3.14 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.28 Total: -14.58 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.09 Total: -32.71 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.29 Total: -17.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.65 -7.03 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777397114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.968 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds