Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 119.99721 * 2 1 4 4 H 1.48508 * 109.46959 * 270.00130 * 3 2 1 5 5 H 1.48498 * 109.47195 * 30.00123 * 3 2 1 6 6 H 1.48494 * 109.47074 * 150.00434 * 3 2 1 7 7 C 1.38983 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.36487 * 126.07249 * 180.33138 * 9 7 2 11 11 C 1.35681 * 107.51010 * 180.16170 * 10 9 7 12 12 N 1.40592 * 126.07937 * 179.84840 * 11 10 9 13 13 C 1.34784 * 119.99624 * 179.71501 * 12 11 10 14 14 O 1.21301 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.35961 * 55.27685 * 16 15 13 18 18 C 1.50065 * 109.35928 * 295.69110 * 16 15 13 19 19 C 1.29443 * 124.07682 * 222.66734 * 18 16 15 20 20 C 1.50074 * 124.07481 * 0.45749 * 19 18 16 21 21 C 1.53025 * 110.14608 * 342.87579 * 20 19 18 22 22 C 1.53024 * 109.36002 * 174.99717 * 16 15 13 23 23 C 1.40641 * 107.83373 * 359.58206 * 11 10 9 24 24 N 1.30907 * 108.39114 * 0.26073 * 23 11 10 25 25 H 0.97000 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.08003 * 126.24650 * 0.04228 * 10 9 7 27 27 H 0.96995 * 120.00305 * 359.97438 * 12 11 10 28 28 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 29 29 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 30 30 H 1.08003 * 117.96658 * 42.63314 * 18 16 15 31 31 H 1.08002 * 117.96617 * 180.46905 * 19 18 16 32 32 H 1.08996 * 109.35680 * 222.66862 * 20 19 18 33 33 H 1.09005 * 109.24444 * 103.01137 * 20 19 18 34 34 H 1.09002 * 109.64160 * 289.74867 * 21 20 19 35 35 H 1.09000 * 109.64158 * 169.12130 * 21 20 19 36 36 H 1.08997 * 109.64165 * 289.32915 * 22 16 15 37 37 H 1.09000 * 109.64288 * 49.74739 * 22 16 15 38 38 H 1.08001 * 125.80555 * 180.24600 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4943 2.0465 -1.4002 5 1 1.4443 2.6527 0.7000 6 1 3.5444 1.4403 0.6999 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6404 0.0053 11 6 0.8578 -4.5384 -0.0006 12 7 0.9892 -5.9382 -0.0005 13 6 -0.1100 -6.7182 -0.0011 14 8 -1.2126 -6.2124 -0.0012 15 6 0.0307 -8.2186 -0.0016 16 6 -1.3578 -8.8611 -0.0028 17 1 -1.9311 -8.4808 -0.8483 18 6 -2.0679 -8.5134 1.2727 19 6 -2.7636 -9.3549 1.9680 20 6 -2.9492 -10.7982 1.6010 21 6 -2.5834 -11.0196 0.1317 22 6 -1.2141 -10.3793 -0.1292 23 6 -0.3512 -3.8199 -0.0006 24 7 -0.0715 -2.5410 -0.0006 25 1 -0.4850 0.8400 0.0004 26 1 2.9301 -3.8708 0.0115 27 1 1.8708 -6.3426 0.0037 28 1 0.5765 -8.5320 -0.8916 29 1 0.5761 -8.5327 0.8883 30 1 -1.9934 -7.4981 1.6333 31 1 -3.2403 -8.9960 2.8682 32 1 -3.9897 -11.0807 1.7608 33 1 -2.3067 -11.4144 2.2301 34 1 -3.3336 -10.5533 -0.5069 35 1 -2.5338 -12.0884 -0.0765 36 1 -0.8765 -10.6330 -1.1340 37 1 -0.4916 -10.7411 0.6023 38 1 -1.3418 -4.2500 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778628586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = 46.201550 kcal Electronic energy + Delta-G solvation = -20446.999913 eV Core-core repulsion = 17290.989250 eV Total energy + Delta-G solvation = -3156.010662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01648 -39.11762 -37.83969 -34.16574 -33.13010 -32.57103 -30.98156 -30.20738 -28.26711 -26.78075 -24.72001 -22.54628 -22.16651 -20.91046 -19.98379 -19.34283 -17.91335 -17.46427 -16.37389 -16.00686 -15.41490 -15.17898 -14.98291 -14.31136 -14.10506 -13.64980 -13.53783 -13.04359 -12.88778 -12.78056 -12.64009 -12.21827 -12.08090 -11.65833 -11.49282 -11.37734 -11.23086 -10.93942 -10.90677 -10.55421 -10.51358 -10.16056 -10.00306 -9.13028 -9.03643 -8.87651 -8.76300 -8.02600 -6.65383 -6.53232 -4.20013 2.44727 2.88704 3.06041 3.07973 3.11285 3.66981 3.71692 3.91790 4.46233 4.65373 4.68924 4.74671 4.86048 5.04479 5.13051 5.15455 5.28748 5.43829 5.47425 5.54519 5.65018 5.66874 5.77567 5.83096 5.86710 6.03573 6.27362 6.30704 6.36827 6.50735 6.84134 6.94593 7.00205 7.08450 7.18902 7.29301 7.89042 8.23953 8.34222 8.67808 8.94034 9.41260 9.70706 10.42871 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.055280 B = 0.003148 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.393283 B = 8891.682844 C = 9189.146237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.144 5.144 10 C -0.086 4.086 11 C -0.059 4.059 12 N -0.628 5.628 13 C 0.496 3.504 14 O -0.534 6.534 15 C -0.129 4.129 16 C -0.043 4.043 17 H 0.089 0.911 18 C -0.128 4.128 19 C -0.179 4.179 20 C -0.088 4.088 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.034 4.034 24 N -0.261 5.261 25 H 0.274 0.726 26 H 0.145 0.855 27 H 0.396 0.604 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 -17.805 0.825 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.088 4.912 10 C -0.237 4.237 11 C -0.164 4.164 12 N -0.271 5.271 13 C 0.283 3.717 14 O -0.411 6.411 15 C -0.169 4.169 16 C -0.061 4.061 17 H 0.107 0.893 18 C -0.145 4.145 19 C -0.197 4.197 20 C -0.125 4.125 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.210 4.210 24 N -0.092 5.092 25 H 0.085 0.915 26 H 0.162 0.838 27 H 0.228 0.772 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.466 -16.092 0.828 16.120 hybrid contribution 1.334 -0.235 0.081 1.357 sum 0.868 -16.327 0.909 16.375 Atomic orbital electron populations 1.70219 1.06114 1.27913 1.35491 1.25635 0.95699 1.00239 0.95541 0.85836 0.79377 0.80024 0.78943 1.19610 1.20102 1.18842 1.19852 0.91624 0.80592 1.53522 0.86690 1.44539 1.04043 1.03286 1.39322 1.21268 0.96827 0.85446 1.20111 1.17305 0.94226 0.81541 1.23355 1.42602 1.08334 1.04500 1.71621 1.20443 0.84455 0.88776 0.78047 1.90585 1.25746 1.75102 1.49711 1.21641 0.98987 0.92360 1.03924 1.19824 0.94390 0.94184 0.97732 0.89318 1.22274 0.96867 0.99916 0.95488 1.21982 1.01780 0.95286 1.00655 1.20413 1.01125 0.94643 0.96272 1.21589 0.97409 1.00120 0.96607 1.21669 0.97432 0.94594 1.01611 1.24110 0.98066 0.90719 1.08096 1.78245 0.90129 1.15153 1.25690 0.91508 0.83800 0.77150 0.89113 0.89261 0.86710 0.88322 0.91607 0.91432 0.91683 0.91927 0.91697 0.91695 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.82 11.81 55.49 0.66 -21.17 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.10 16 3 Si 0.93 19.12 29.55 -169.99 -5.02 14.09 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.32 -8.68 10.25 -14.82 -0.15 -8.83 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -4.01 3.74 -11.41 -0.04 -4.06 16 10 C -0.09 -2.04 11.49 -16.39 -0.19 -2.23 16 11 C -0.06 -1.37 6.90 -83.84 -0.58 -1.95 16 12 N -0.63 -11.09 5.47 -10.00 -0.05 -11.14 16 13 C 0.50 8.42 7.43 -10.98 -0.08 8.34 16 14 O -0.53 -11.14 11.39 5.54 0.06 -11.08 16 15 C -0.13 -1.49 5.14 -27.89 -0.14 -1.63 16 16 C -0.04 -0.51 2.12 -92.07 -0.19 -0.71 16 17 H 0.09 1.20 7.96 -51.93 -0.41 0.79 16 18 C -0.13 -1.72 8.41 -35.90 -0.30 -2.03 16 19 C -0.18 -2.11 9.80 -35.90 -0.35 -2.46 16 20 C -0.09 -0.82 6.12 -28.17 -0.17 -0.99 16 21 C -0.12 -1.06 6.01 -26.51 -0.16 -1.22 16 22 C -0.12 -1.06 5.30 -26.51 -0.14 -1.20 16 23 C -0.03 -0.92 10.85 -17.04 -0.18 -1.11 16 24 N -0.26 -7.71 10.40 30.80 0.32 -7.39 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.14 2.86 8.06 -52.48 -0.42 2.44 16 27 H 0.40 5.33 8.83 -40.82 -0.36 4.97 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.88 6.47 -52.48 -0.34 1.54 16 31 H 0.10 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.18 4.63 5.92 -52.49 -0.31 4.32 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -33.15 315.51 -7.27 -40.42 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.19 Total: 10.47 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -2.75 Total: -14.91 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.88 Total: -43.76 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.06 Total: -11.08 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.15 -7.27 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778628586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.624 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds