Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 119.99721 * 2 1 4 4 H 1.48508 * 109.46959 * 270.00130 * 3 2 1 5 5 H 1.48498 * 109.47195 * 30.00123 * 3 2 1 6 6 H 1.48494 * 109.47074 * 150.00434 * 3 2 1 7 7 C 1.38983 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99877 * 179.97438 * 7 2 1 9 9 N 1.37322 * 120.00160 * 359.97438 * 7 2 1 10 10 C 1.36487 * 126.07249 * 180.33138 * 9 7 2 11 11 C 1.35681 * 107.51010 * 180.16170 * 10 9 7 12 12 N 1.40592 * 126.07937 * 179.84840 * 11 10 9 13 13 C 1.34784 * 119.99624 * 179.71501 * 12 11 10 14 14 O 1.21301 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 179.97438 * 13 12 11 16 16 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 17 17 H 1.09007 * 109.35961 * 55.27685 * 16 15 13 18 18 C 1.50065 * 109.35928 * 295.69110 * 16 15 13 19 19 C 1.29443 * 124.07682 * 222.66734 * 18 16 15 20 20 C 1.50074 * 124.07481 * 0.45749 * 19 18 16 21 21 C 1.53025 * 110.14608 * 342.87579 * 20 19 18 22 22 C 1.53024 * 109.36002 * 174.99717 * 16 15 13 23 23 C 1.40641 * 107.83373 * 359.58206 * 11 10 9 24 24 N 1.30907 * 108.39114 * 0.26073 * 23 11 10 25 25 H 0.97000 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.08003 * 126.24650 * 0.04228 * 10 9 7 27 27 H 0.96995 * 120.00305 * 359.97438 * 12 11 10 28 28 H 1.09004 * 109.46932 * 300.00223 * 15 13 12 29 29 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 30 30 H 1.08003 * 117.96658 * 42.63314 * 18 16 15 31 31 H 1.08002 * 117.96617 * 180.46905 * 19 18 16 32 32 H 1.08996 * 109.35680 * 222.66862 * 20 19 18 33 33 H 1.09005 * 109.24444 * 103.01137 * 20 19 18 34 34 H 1.09002 * 109.64160 * 289.74867 * 21 20 19 35 35 H 1.09000 * 109.64158 * 169.12130 * 21 20 19 36 36 H 1.08997 * 109.64165 * 289.32915 * 22 16 15 37 37 H 1.09000 * 109.64288 * 49.74739 * 22 16 15 38 38 H 1.08001 * 125.80555 * 180.24600 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.4943 2.0465 -1.4002 5 1 1.4443 2.6527 0.7000 6 1 3.5444 1.4403 0.6999 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8749 -3.6404 0.0053 11 6 0.8578 -4.5384 -0.0006 12 7 0.9892 -5.9382 -0.0005 13 6 -0.1100 -6.7182 -0.0011 14 8 -1.2126 -6.2124 -0.0012 15 6 0.0307 -8.2186 -0.0016 16 6 -1.3578 -8.8611 -0.0028 17 1 -1.9311 -8.4808 -0.8483 18 6 -2.0679 -8.5134 1.2727 19 6 -2.7636 -9.3549 1.9680 20 6 -2.9492 -10.7982 1.6010 21 6 -2.5834 -11.0196 0.1317 22 6 -1.2141 -10.3793 -0.1292 23 6 -0.3512 -3.8199 -0.0006 24 7 -0.0715 -2.5410 -0.0006 25 1 -0.4850 0.8400 0.0004 26 1 2.9301 -3.8708 0.0115 27 1 1.8708 -6.3426 0.0037 28 1 0.5765 -8.5320 -0.8916 29 1 0.5761 -8.5327 0.8883 30 1 -1.9934 -7.4981 1.6333 31 1 -3.2403 -8.9960 2.8682 32 1 -3.9897 -11.0807 1.7608 33 1 -2.3067 -11.4144 2.2301 34 1 -3.3336 -10.5533 -0.5069 35 1 -2.5338 -12.0884 -0.0765 36 1 -0.8765 -10.6330 -1.1340 37 1 -0.4916 -10.7411 0.6023 38 1 -1.3418 -4.2500 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778628586.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = 24.782178 kcal Electronic energy + Delta-G solvation = -20447.928727 eV Core-core repulsion = 17290.989250 eV Total energy + Delta-G solvation = -3156.939476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71412 -40.56656 -38.98278 -35.88692 -34.92549 -33.57076 -32.21395 -31.82475 -29.90153 -28.07828 -26.57174 -23.57362 -23.06399 -22.73253 -21.49419 -21.10395 -19.28406 -18.79120 -17.77213 -17.37435 -17.10346 -16.63526 -16.27157 -15.77803 -15.24986 -15.07938 -14.98389 -14.76096 -14.30019 -13.73188 -13.50247 -13.48467 -13.29093 -13.14964 -12.94805 -12.90695 -12.83407 -12.34473 -12.09107 -11.78795 -11.66238 -11.33568 -10.99821 -10.95815 -10.81745 -10.44903 -10.09753 -9.83733 -8.49619 -8.46895 -6.23967 1.24223 1.39196 1.45308 1.56836 1.58803 1.89841 2.08060 2.38737 2.56023 2.95254 3.09067 3.78251 3.85613 3.97731 4.09467 4.34298 4.41779 4.48235 4.54612 4.57781 4.64384 4.76370 4.85959 4.88564 4.94945 5.00728 5.11252 5.13363 5.15237 5.27624 5.30553 5.47357 5.53116 5.56942 5.85607 5.96625 6.13989 6.34171 6.74874 6.85026 7.45790 7.52556 7.70368 8.52699 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.055280 B = 0.003148 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.393283 B = 8891.682844 C = 9189.146237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.243 1.243 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.084 4.084 11 C -0.042 4.042 12 N -0.622 5.622 13 C 0.491 3.509 14 O -0.577 6.577 15 C -0.115 4.115 16 C -0.041 4.041 17 H 0.064 0.936 18 C -0.154 4.154 19 C -0.168 4.168 20 C -0.087 4.087 21 C -0.121 4.121 22 C -0.108 4.108 23 C -0.063 4.063 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.188 0.812 27 H 0.420 0.580 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -20.247 0.723 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.166 1.166 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.061 4.939 10 C -0.234 4.234 11 C -0.149 4.149 12 N -0.267 5.267 13 C 0.280 3.720 14 O -0.456 6.456 15 C -0.154 4.154 16 C -0.060 4.060 17 H 0.082 0.918 18 C -0.172 4.172 19 C -0.186 4.186 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.238 4.238 24 N -0.144 5.144 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.257 0.743 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.159 -18.603 0.727 18.742 hybrid contribution 0.442 0.360 0.158 0.592 sum 2.601 -18.243 0.884 18.448 Atomic orbital electron populations 1.70410 1.08484 1.29036 1.37555 1.26908 0.96480 1.04417 0.94162 0.84579 0.78282 0.73986 0.79249 1.18850 1.20261 1.16643 1.20619 0.92957 0.80921 1.54071 0.84152 1.44843 1.03592 1.04861 1.40634 1.22025 0.98852 0.84239 1.18267 1.17402 0.92599 0.84288 1.20576 1.42614 1.10155 1.02106 1.71847 1.21603 0.83381 0.91072 0.75911 1.90582 1.27644 1.76397 1.51015 1.21698 0.99631 0.87284 1.06795 1.19820 0.93946 0.96567 0.95654 0.91813 1.22155 0.99404 0.98398 0.97250 1.22239 0.99747 0.96780 0.99796 1.20491 1.02244 0.92552 0.97135 1.21627 0.96961 1.01492 0.95776 1.21655 0.98002 0.91713 1.03198 1.24143 0.99069 0.90967 1.09666 1.78134 0.92113 1.16669 1.27516 0.91470 0.79495 0.74314 0.85530 0.86589 0.90737 0.88740 0.90605 0.89600 0.92944 0.89478 0.89876 0.90184 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.81 11.81 21.66 0.26 -48.56 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 39.20 29.55 68.60 2.03 41.23 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 7 C -0.35 -19.12 10.25 84.01 0.86 -18.26 16 8 H 0.14 6.53 7.83 -2.91 -0.02 6.51 16 9 N -0.17 -9.65 3.74 -190.02 -0.71 -10.36 16 10 C -0.08 -3.94 11.49 83.38 0.96 -2.98 16 11 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 12 N -0.62 -21.14 5.47 -303.92 -1.66 -22.80 16 13 C 0.49 16.47 7.43 87.66 0.65 17.12 16 14 O -0.58 -25.19 11.39 -3.09 -0.04 -25.22 16 15 C -0.11 -2.35 5.14 29.85 0.15 -2.20 16 16 C -0.04 -0.93 2.12 -11.73 -0.02 -0.96 16 17 H 0.06 1.74 7.96 -2.38 -0.02 1.73 16 18 C -0.15 -4.22 8.41 27.04 0.23 -3.99 16 19 C -0.17 -3.85 9.80 27.04 0.27 -3.59 16 20 C -0.09 -1.41 6.12 29.66 0.18 -1.23 16 21 C -0.12 -1.79 6.01 30.73 0.18 -1.60 16 22 C -0.11 -1.60 5.30 30.73 0.16 -1.44 16 23 C -0.06 -3.56 10.85 85.42 0.93 -2.63 16 24 N -0.31 -19.37 10.40 -56.47 -0.59 -19.95 16 25 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 26 H 0.19 6.89 8.06 -2.91 -0.02 6.86 16 27 H 0.42 10.05 8.83 -92.71 -0.82 9.23 16 28 H 0.13 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 2.62 6.47 -2.91 -0.02 2.61 16 31 H 0.09 2.17 8.06 -2.91 -0.02 2.15 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.17 9.38 5.92 -2.91 -0.02 9.36 16 Total: -1.00 -78.48 315.51 4.82 -73.67 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.25 Total: 35.48 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 5.27 Total: -23.47 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -2.70 Total: -101.68 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.22 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -78.48 4.82 -73.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778628586.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.448 kcal (2) G-P(sol) polarization free energy of solvation -78.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds