Wall clock time and date at job start Mon Mar 30 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48498 * 109.46789 * 270.00352 * 3 2 1 5 5 H 1.48495 * 109.46955 * 30.00328 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00561 * 3 2 1 7 7 C 1.37877 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99845 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99681 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00297 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99783 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64947 * 359.96550 * 13 11 10 15 15 C 1.54915 * 104.83512 * 155.90432 * 14 13 11 16 16 C 1.55165 * 101.57914 * 37.00695 * 15 14 13 17 17 C 1.47021 * 125.64696 * 180.02562 * 13 11 10 18 18 H 1.08994 * 109.88703 * 300.44468 * 17 13 11 19 19 C 1.50700 * 109.88206 * 61.61073 * 17 13 11 20 20 C 1.38223 * 119.62066 * 242.53599 * 19 17 13 21 21 C 1.38629 * 119.16261 * 179.75309 * 20 19 17 22 22 C 1.38676 * 118.41990 * 0.50817 * 21 20 19 23 23 C 1.38182 * 119.16267 * 359.73458 * 22 21 20 24 24 N 1.31858 * 119.61869 * 62.80791 * 19 17 13 25 25 H 0.96992 * 120.00443 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47686 * 60.00311 * 9 7 2 27 27 H 1.08996 * 109.47745 * 299.99825 * 9 7 2 28 28 H 0.97008 * 119.99672 * 0.02562 * 10 9 7 29 29 H 1.09001 * 110.36883 * 274.73771 * 14 13 11 30 30 H 1.09002 * 110.36976 * 37.06480 * 14 13 11 31 31 H 1.09002 * 111.00333 * 278.93554 * 15 14 13 32 32 H 1.08992 * 111.00564 * 155.07959 * 15 14 13 33 33 H 1.08993 * 110.71917 * 206.13717 * 16 15 14 34 34 H 1.09002 * 110.71751 * 82.86289 * 16 15 14 35 35 H 1.08004 * 120.41836 * 359.97438 * 20 19 17 36 36 H 1.08005 * 120.78929 * 180.21492 * 21 20 19 37 37 H 1.08001 * 120.41993 * 179.74991 * 22 21 20 38 38 H 1.08001 * 119.61689 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1152 -1.8971 -0.0025 13 7 5.7744 -4.0919 -0.0013 14 6 4.9314 -5.3013 0.0011 15 6 5.8252 -6.4090 -0.6104 16 6 7.2161 -6.0442 -0.0274 17 6 7.1864 -4.5014 -0.0017 18 1 7.6868 -4.1065 -0.8859 19 6 7.8669 -3.9962 1.2443 20 6 8.9119 -3.0980 1.1357 21 6 9.5277 -2.6355 2.2884 22 6 9.0743 -3.1040 3.5124 23 6 8.0276 -4.0056 3.5424 24 7 7.4621 -4.4202 2.4255 25 1 -0.4850 0.8399 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 3.3697 -3.3124 -0.0010 29 1 4.6467 -5.5633 1.0202 30 1 4.0446 -5.1470 -0.6136 31 1 5.8302 -6.3504 -1.6989 32 1 5.5079 -7.3964 -0.2753 33 1 8.0133 -6.4040 -0.6778 34 1 7.3288 -6.4443 0.9802 35 1 9.2422 -2.7581 0.1652 36 1 10.3443 -1.9307 2.2343 37 1 9.5334 -2.7683 4.4305 38 1 7.6684 -4.3750 4.4916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:00 Heat of formation + Delta-G solvation = 12.508731 kcal Electronic energy + Delta-G solvation = -21197.009623 eV Core-core repulsion = 18039.537930 eV Total energy + Delta-G solvation = -3157.471693 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57780 -39.24782 -37.19035 -34.22765 -32.59106 -32.32116 -31.81584 -31.21753 -28.31234 -27.54143 -24.06545 -23.47220 -22.59028 -21.76206 -20.73138 -19.34504 -18.09219 -17.08506 -16.46942 -16.14875 -15.77189 -15.50530 -14.81312 -14.46100 -14.30934 -13.97856 -13.47777 -13.35451 -13.17949 -12.94512 -12.87569 -12.33857 -12.30404 -12.10611 -11.80395 -11.33618 -11.22332 -10.94026 -10.82750 -10.72865 -9.93105 -9.79529 -9.56987 -9.41869 -9.38246 -8.91019 -8.73637 -8.44945 -7.89168 -6.17454 -4.18809 1.14371 1.35885 3.11249 3.29931 3.36635 3.46043 3.80916 3.90904 4.25509 4.37300 4.53174 4.62396 4.74878 4.85145 4.88489 5.05790 5.11587 5.18189 5.23064 5.30617 5.46175 5.62393 5.67589 5.72981 5.75864 5.82695 5.96413 6.13808 6.22094 6.22218 6.47882 6.74417 6.84621 7.16156 7.33068 7.46666 7.65397 8.07744 8.30931 8.73209 8.84856 9.27004 9.45084 10.94622 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.005143 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.811299 B = 5443.269961 C = 6346.487234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.240 3.760 10 N -0.720 5.720 11 C 0.714 3.286 12 O -0.598 6.598 13 N -0.629 5.629 14 C 0.103 3.897 15 C -0.128 4.128 16 C -0.121 4.121 17 C 0.208 3.792 18 H 0.085 0.915 19 C 0.129 3.871 20 C -0.143 4.143 21 C -0.078 4.078 22 C -0.178 4.178 23 C 0.095 3.905 24 N -0.469 5.469 25 H 0.267 0.733 26 H 0.021 0.979 27 H 0.018 0.982 28 H 0.392 0.608 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.732 -13.084 2.509 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.117 3.883 10 N -0.372 5.372 11 C 0.416 3.584 12 O -0.478 6.478 13 N -0.369 5.369 14 C -0.021 4.021 15 C -0.166 4.166 16 C -0.159 4.159 17 C 0.103 3.897 18 H 0.103 0.897 19 C -0.010 4.010 20 C -0.164 4.164 21 C -0.104 4.104 22 C -0.198 4.198 23 C -0.063 4.063 24 N -0.178 5.178 25 H 0.077 0.923 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.226 0.774 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 17.365 -12.731 2.542 21.681 hybrid contribution 0.654 1.360 0.105 1.513 sum 18.019 -11.370 2.646 21.470 Atomic orbital electron populations 1.69878 1.06174 1.27354 1.49710 1.24767 0.94768 0.99084 0.93935 0.86823 0.80611 0.83270 0.79033 1.19843 1.20932 1.18527 1.21089 0.88545 0.95177 1.52996 0.90314 1.19341 0.94798 0.77657 0.96492 1.45398 1.03551 1.10969 1.77304 1.15632 0.83602 0.81055 0.78106 1.90854 1.55443 1.42225 1.59241 1.47548 1.05593 1.04254 1.79495 1.22232 0.94219 0.84644 1.00974 1.22735 0.94651 0.98531 1.00706 1.22683 0.97922 0.92585 1.02745 1.20155 0.82135 0.94605 0.92844 0.89712 1.21419 0.92425 0.93610 0.93570 1.21907 0.97202 0.97525 0.99727 1.21528 0.98849 0.97627 0.92422 1.22087 0.99328 0.99700 0.98666 1.22684 0.92642 0.94350 0.96582 1.67358 1.27342 1.25093 0.98047 0.92310 0.96108 0.96428 0.77439 0.91351 0.90730 0.90588 0.89828 0.90182 0.89564 0.85006 0.85092 0.85156 0.83063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.39 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 7 C -0.54 -15.32 9.83 -34.44 -0.34 -15.66 16 8 H 0.08 2.32 7.84 -52.49 -0.41 1.91 16 9 C 0.24 6.24 4.50 -5.19 -0.02 6.22 16 10 N -0.72 -16.04 5.51 -66.41 -0.37 -16.40 16 11 C 0.71 15.32 8.28 -86.92 -0.72 14.60 16 12 O -0.60 -14.78 16.18 5.29 0.09 -14.69 16 13 N -0.63 -10.41 3.06 -170.00 -0.52 -10.93 16 14 C 0.10 1.31 6.57 -2.53 -0.02 1.29 16 15 C -0.13 -1.20 7.09 -24.58 -0.17 -1.37 16 16 C -0.12 -1.22 6.43 -24.89 -0.16 -1.38 16 17 C 0.21 2.90 3.16 -68.10 -0.22 2.69 16 18 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 19 C 0.13 1.93 4.98 -82.59 -0.41 1.52 16 20 C -0.14 -1.99 9.72 -39.44 -0.38 -2.37 16 21 C -0.08 -0.94 10.18 -39.28 -0.40 -1.34 16 22 C -0.18 -2.04 10.11 -39.44 -0.40 -2.44 16 23 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 24 N -0.47 -7.11 9.59 -9.47 -0.09 -7.20 16 25 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 28 H 0.39 7.85 6.80 -40.82 -0.28 7.58 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 7.30 -51.93 -0.38 0.54 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.92 7.35 -51.93 -0.38 0.54 16 35 H 0.13 1.65 7.96 -52.48 -0.42 1.23 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -35.04 318.96 -8.68 -43.73 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.17 Total: 4.59 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -3.53 Total: 4.94 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.20 Total: -60.76 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.09 Total: -14.69 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.04 -8.68 -43.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.236 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds