Wall clock time and date at job start Mon Mar 30 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48498 * 109.46789 * 270.00352 * 3 2 1 5 5 H 1.48495 * 109.46955 * 30.00328 * 3 2 1 6 6 H 1.48500 * 109.47183 * 150.00561 * 3 2 1 7 7 C 1.37877 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99845 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99681 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47071 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00297 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99783 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99938 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64947 * 359.96550 * 13 11 10 15 15 C 1.54915 * 104.83512 * 155.90432 * 14 13 11 16 16 C 1.55165 * 101.57914 * 37.00695 * 15 14 13 17 17 C 1.47021 * 125.64696 * 180.02562 * 13 11 10 18 18 H 1.08994 * 109.88703 * 300.44468 * 17 13 11 19 19 C 1.50700 * 109.88206 * 61.61073 * 17 13 11 20 20 C 1.38223 * 119.62066 * 242.53599 * 19 17 13 21 21 C 1.38629 * 119.16261 * 179.75309 * 20 19 17 22 22 C 1.38676 * 118.41990 * 0.50817 * 21 20 19 23 23 C 1.38182 * 119.16267 * 359.73458 * 22 21 20 24 24 N 1.31858 * 119.61869 * 62.80791 * 19 17 13 25 25 H 0.96992 * 120.00443 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47686 * 60.00311 * 9 7 2 27 27 H 1.08996 * 109.47745 * 299.99825 * 9 7 2 28 28 H 0.97008 * 119.99672 * 0.02562 * 10 9 7 29 29 H 1.09001 * 110.36883 * 274.73771 * 14 13 11 30 30 H 1.09002 * 110.36976 * 37.06480 * 14 13 11 31 31 H 1.09002 * 111.00333 * 278.93554 * 15 14 13 32 32 H 1.08992 * 111.00564 * 155.07959 * 15 14 13 33 33 H 1.08993 * 110.71917 * 206.13717 * 16 15 14 34 34 H 1.09002 * 110.71751 * 82.86289 * 16 15 14 35 35 H 1.08004 * 120.41836 * 359.97438 * 20 19 17 36 36 H 1.08005 * 120.78929 * 180.21492 * 21 20 19 37 37 H 1.08001 * 120.41993 * 179.74991 * 22 21 20 38 38 H 1.08001 * 119.61689 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1152 -1.8971 -0.0025 13 7 5.7744 -4.0919 -0.0013 14 6 4.9314 -5.3013 0.0011 15 6 5.8252 -6.4090 -0.6104 16 6 7.2161 -6.0442 -0.0274 17 6 7.1864 -4.5014 -0.0017 18 1 7.6868 -4.1065 -0.8859 19 6 7.8669 -3.9962 1.2443 20 6 8.9119 -3.0980 1.1357 21 6 9.5277 -2.6355 2.2884 22 6 9.0743 -3.1040 3.5124 23 6 8.0276 -4.0056 3.5424 24 7 7.4621 -4.4202 2.4255 25 1 -0.4850 0.8399 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 3.3697 -3.3124 -0.0010 29 1 4.6467 -5.5633 1.0202 30 1 4.0446 -5.1470 -0.6136 31 1 5.8302 -6.3504 -1.6989 32 1 5.5079 -7.3964 -0.2753 33 1 8.0133 -6.4040 -0.6778 34 1 7.3288 -6.4443 0.9802 35 1 9.2422 -2.7581 0.1652 36 1 10.3443 -1.9307 2.2343 37 1 9.5334 -2.7683 4.4305 38 1 7.6684 -4.3750 4.4916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:00 Heat of formation + Delta-G solvation = -11.847664 kcal Electronic energy + Delta-G solvation = -21198.065796 eV Core-core repulsion = 18039.537930 eV Total energy + Delta-G solvation = -3158.527865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72540 -40.56234 -38.49618 -36.16881 -34.50920 -33.39570 -32.92611 -32.47884 -29.74383 -29.08715 -25.29558 -24.48635 -24.12591 -23.12680 -21.85209 -20.93137 -19.59574 -18.42283 -18.09199 -17.39512 -16.87217 -16.86518 -16.43741 -16.03924 -15.74362 -15.11773 -15.01446 -14.54266 -14.44979 -14.29440 -14.08953 -14.06228 -13.76109 -13.23841 -13.02043 -12.89431 -12.70780 -12.21548 -12.11644 -11.95142 -11.68109 -11.63740 -11.25531 -10.93631 -10.77267 -10.41504 -10.11326 -9.92642 -9.44087 -8.41880 -6.48823 0.15824 0.39005 1.30747 1.32073 1.46091 1.72724 2.17602 2.26670 2.86332 2.93260 3.22897 3.31385 3.63764 3.76192 3.83208 4.03888 4.16556 4.23581 4.30191 4.35402 4.57133 4.67091 4.70024 4.76952 4.81791 4.94182 4.99066 5.02859 5.10757 5.19680 5.22526 5.27686 5.35748 5.42487 5.52484 5.80707 6.01623 6.22891 6.52277 7.07033 7.08405 7.17419 7.63095 8.72999 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.005143 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.811299 B = 5443.269961 C = 6346.487234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.256 3.744 10 N -0.722 5.722 11 C 0.710 3.290 12 O -0.636 6.636 13 N -0.624 5.624 14 C 0.092 3.908 15 C -0.114 4.114 16 C -0.109 4.109 17 C 0.197 3.803 18 H 0.084 0.916 19 C 0.105 3.895 20 C -0.164 4.164 21 C -0.084 4.084 22 C -0.174 4.174 23 C 0.077 3.923 24 N -0.494 5.494 25 H 0.273 0.727 26 H 0.004 0.996 27 H 0.009 0.991 28 H 0.401 0.599 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.336 -13.758 2.775 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.076 0.924 9 C 0.132 3.868 10 N -0.376 5.376 11 C 0.412 3.588 12 O -0.518 6.518 13 N -0.362 5.362 14 C -0.030 4.030 15 C -0.152 4.152 16 C -0.147 4.147 17 C 0.092 3.908 18 H 0.102 0.898 19 C -0.033 4.033 20 C -0.185 4.185 21 C -0.110 4.110 22 C -0.193 4.193 23 C -0.080 4.080 24 N -0.204 5.204 25 H 0.083 0.917 26 H 0.021 0.979 27 H 0.027 0.973 28 H 0.236 0.764 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 18.977 -13.480 2.802 23.446 hybrid contribution 0.178 1.485 0.081 1.498 sum 19.155 -11.995 2.884 22.784 Atomic orbital electron populations 1.69969 1.07575 1.28673 1.50555 1.25550 0.95546 1.02515 0.93468 0.85863 0.79079 0.79375 0.79593 1.18679 1.19455 1.19029 1.21231 0.89693 0.94622 1.52842 0.92413 1.18906 0.93168 0.79603 0.95154 1.45154 1.04503 1.09844 1.78091 1.15748 0.82741 0.82432 0.77926 1.90809 1.56080 1.44086 1.60843 1.47571 1.07627 1.03454 1.77529 1.22526 0.94751 0.84356 1.01403 1.22742 0.93004 0.98272 1.01137 1.22669 0.99305 0.89486 1.03244 1.20509 0.80340 0.97216 0.92739 0.89791 1.21575 0.93292 0.94559 0.93888 1.22142 0.97678 0.97840 1.00795 1.21941 0.99265 0.97683 0.92094 1.22473 0.98505 0.98547 0.99817 1.23208 0.93109 0.94758 0.96892 1.67337 1.28271 1.26095 0.98664 0.91730 0.97859 0.97261 0.76367 0.91558 0.90572 0.89460 0.87070 0.87368 0.90068 0.84659 0.82391 0.81855 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.96 21.45 0.30 -56.20 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.94 45.51 27.47 68.60 1.88 47.40 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -13.04 6.54 99.48 0.65 -12.39 16 7 C -0.55 -31.52 9.83 25.60 0.25 -31.26 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 9 C 0.26 13.53 4.50 85.63 0.38 13.92 16 10 N -0.72 -32.73 5.51 -482.29 -2.66 -35.38 16 11 C 0.71 30.82 8.28 179.06 1.48 32.30 16 12 O -0.64 -31.94 16.18 -3.99 -0.06 -32.01 16 13 N -0.62 -20.46 3.06 -810.03 -2.48 -22.94 16 14 C 0.09 2.24 6.57 86.86 0.57 2.82 16 15 C -0.11 -1.82 7.09 31.99 0.23 -1.59 16 16 C -0.11 -1.96 6.43 31.79 0.20 -1.76 16 17 C 0.20 5.34 3.16 44.60 0.14 5.48 16 18 H 0.08 2.24 7.90 -2.39 -0.02 2.22 16 19 C 0.11 3.12 4.98 42.55 0.21 3.33 16 20 C -0.16 -4.49 9.72 22.36 0.22 -4.27 16 21 C -0.08 -1.90 10.18 22.47 0.23 -1.67 16 22 C -0.17 -3.64 10.11 22.36 0.23 -3.42 16 23 C 0.08 1.90 11.18 84.67 0.95 2.84 16 24 N -0.49 -14.69 9.59 -183.89 -1.76 -16.45 16 25 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 26 H 0.00 0.20 7.20 -2.39 -0.02 0.18 16 27 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 28 H 0.40 16.37 6.80 -92.70 -0.63 15.74 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.83 7.30 -2.39 -0.02 1.81 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.58 7.35 -2.39 -0.02 1.57 16 35 H 0.14 3.41 7.96 -2.91 -0.02 3.39 16 36 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -76.52 318.96 1.16 -75.36 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.38 Total: 21.30 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 5.56 Total: 18.91 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -6.60 Total: -130.97 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.01 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.88 Total: 47.40 kcal Total: -76.52 1.16 -75.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.515 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds