Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48507 * 109.46689 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47444 * 299.99464 * 3 2 1 6 6 H 1.48496 * 109.47416 * 59.99984 * 3 2 1 7 7 C 1.37871 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00183 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00076 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00394 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99978 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64906 * 0.03730 * 13 11 10 15 15 C 1.54915 * 104.83334 * 204.09456 * 14 13 11 16 16 C 1.55165 * 101.57980 * 322.99105 * 15 14 13 17 17 C 1.47022 * 125.64758 * 179.97438 * 13 11 10 18 18 H 1.09001 * 110.01221 * 59.48592 * 17 13 11 19 19 C 1.50698 * 109.88394 * 298.39023 * 17 13 11 20 20 C 1.38229 * 119.61561 * 6.92121 * 19 17 13 21 21 C 1.38631 * 119.15693 * 179.70834 * 20 19 17 22 22 C 1.38668 * 118.42237 * 0.55195 * 21 20 19 23 23 C 1.38182 * 119.16336 * 359.73107 * 22 21 20 24 24 N 1.31854 * 119.61797 * 187.19121 * 19 17 13 25 25 H 0.97001 * 119.99935 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47429 * 59.99832 * 9 7 2 27 27 H 1.09000 * 109.46744 * 299.99771 * 9 7 2 28 28 H 0.96998 * 119.99913 * 359.97438 * 10 9 7 29 29 H 1.08997 * 110.36855 * 322.93198 * 14 13 11 30 30 H 1.08999 * 110.36490 * 85.14513 * 14 13 11 31 31 H 1.08995 * 111.00392 * 204.91661 * 15 14 13 32 32 H 1.09001 * 111.00387 * 81.05917 * 15 14 13 33 33 H 1.08993 * 110.71917 * 277.13865 * 16 15 14 34 34 H 1.09002 * 110.71751 * 153.86437 * 16 15 14 35 35 H 1.07997 * 120.42099 * 359.97438 * 20 19 17 36 36 H 1.07999 * 120.78487 * 180.30549 * 21 20 19 37 37 H 1.08007 * 120.41745 * 179.70968 * 22 21 20 38 38 H 1.07997 * 119.61509 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9077 0.0021 14 6 4.0985 -5.7822 0.0039 15 6 4.6107 -7.1103 -0.6074 16 6 3.5996 -8.1323 -0.0236 17 6 2.2783 -7.3353 0.0024 18 1 1.6845 -7.5735 -0.8801 19 6 1.5011 -7.6716 1.2489 20 6 1.1057 -6.6581 2.1017 21 6 0.3859 -6.9777 3.2425 22 6 0.0994 -8.3117 3.4901 23 6 0.5330 -9.2709 2.5949 24 7 1.2108 -8.9297 1.5162 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8903 28 1 3.1566 -3.4354 0.0021 29 1 4.4079 -4.9373 -0.6113 30 1 4.4679 -5.6642 1.0226 31 1 5.6247 -7.3291 -0.2727 32 1 4.5569 -7.0858 -1.6958 33 1 3.8901 -8.4296 0.9840 34 1 3.5124 -9.0029 -0.6736 35 1 1.3507 -5.6300 1.8797 36 1 0.0595 -6.2064 3.9244 37 1 -0.4553 -8.5974 4.3717 38 1 0.3143 -10.3121 2.7808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787352366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = 17.381297 kcal Electronic energy + Delta-G solvation = -21239.012217 eV Core-core repulsion = 18081.751815 eV Total energy + Delta-G solvation = -3157.260402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72684 -39.17228 -37.22134 -34.25517 -32.66835 -32.29791 -31.68231 -31.04091 -28.24937 -27.05477 -24.07989 -23.34902 -22.76519 -21.86250 -20.80162 -19.28795 -18.16066 -17.04838 -16.36091 -16.02457 -15.54263 -15.46805 -15.00268 -14.66000 -14.16647 -14.02913 -13.49460 -13.19321 -12.98759 -12.89752 -12.82820 -12.31878 -11.97988 -11.90923 -11.67610 -11.27577 -11.20675 -10.94198 -10.91646 -10.83519 -10.31552 -9.70138 -9.44257 -9.37711 -9.32357 -8.79057 -8.70988 -8.49851 -7.78171 -6.17379 -4.24049 1.27664 1.47506 3.03098 3.22784 3.30267 3.33249 3.76815 3.93119 4.28626 4.37398 4.52114 4.57832 4.84693 4.93742 5.01117 5.06875 5.19034 5.23845 5.27707 5.41782 5.47064 5.63027 5.69004 5.79252 5.82995 5.92832 5.96389 6.10582 6.28458 6.40068 6.56471 6.86627 7.14273 7.46524 7.53091 7.54646 7.84505 7.99760 8.10178 8.72504 8.85884 9.26981 9.44666 10.92859 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.004636 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.771385 B = 6038.842173 C = 6909.656682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.725 5.725 11 C 0.708 3.292 12 O -0.589 6.589 13 N -0.642 5.642 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.110 4.110 17 C 0.209 3.791 18 H 0.091 0.909 19 C 0.121 3.879 20 C -0.132 4.132 21 C -0.080 4.080 22 C -0.179 4.179 23 C 0.088 3.912 24 N -0.482 5.482 25 H 0.265 0.735 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.387 0.613 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 -16.291 3.745 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.410 3.590 12 O -0.468 6.468 13 N -0.383 5.383 14 C -0.023 4.023 15 C -0.170 4.170 16 C -0.148 4.148 17 C 0.103 3.897 18 H 0.109 0.891 19 C -0.018 4.018 20 C -0.151 4.151 21 C -0.106 4.106 22 C -0.199 4.199 23 C -0.069 4.069 24 N -0.192 5.192 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.220 0.780 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.534 -16.819 3.159 18.699 hybrid contribution 0.362 1.784 0.706 1.952 sum 7.896 -15.036 3.865 17.417 Atomic orbital electron populations 1.69988 1.06096 1.27184 1.48975 1.24937 0.94898 0.99395 0.94733 0.86364 0.79818 0.82980 0.77754 1.19641 1.20795 1.20808 1.21242 0.93284 0.90360 1.53086 0.91910 1.19012 0.87753 0.81015 0.97664 1.45800 1.10995 1.04085 1.76895 1.15658 0.84381 0.80489 0.78452 1.90941 1.13578 1.83687 1.58546 1.47755 1.05881 1.04546 1.80069 1.22238 0.80646 0.98707 1.00747 1.22800 0.99021 0.94115 1.01095 1.22543 0.92393 0.97605 1.02284 1.19937 0.95351 0.80292 0.94136 0.89136 1.21404 0.95991 0.88599 0.95778 1.22262 0.97199 1.01799 0.93867 1.21631 0.95682 0.96478 0.96787 1.22070 1.02442 0.94069 1.01354 1.22574 0.94648 0.99650 0.90053 1.67295 1.12993 1.19715 1.19215 0.92500 0.95652 0.95722 0.78014 0.90486 0.91731 0.89844 0.90328 0.90615 0.89490 0.84161 0.85092 0.85240 0.83077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.27 7.07 5.43 -5.19 -0.03 7.04 16 10 N -0.73 -15.51 5.51 -66.42 -0.37 -15.88 16 11 C 0.71 14.70 6.28 -86.92 -0.55 14.15 16 12 O -0.59 -14.57 14.63 5.29 0.08 -14.49 16 13 N -0.64 -10.24 2.67 -170.00 -0.45 -10.70 16 14 C 0.10 1.17 6.57 -2.53 -0.02 1.16 16 15 C -0.13 -1.20 7.09 -24.57 -0.17 -1.37 16 16 C -0.11 -1.16 6.29 -24.89 -0.16 -1.32 16 17 C 0.21 3.08 3.34 -68.10 -0.23 2.85 16 18 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 19 C 0.12 1.95 5.88 -82.59 -0.49 1.47 16 20 C -0.13 -2.28 8.06 -39.44 -0.32 -2.60 16 21 C -0.08 -1.18 10.18 -39.28 -0.40 -1.58 16 22 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 23 C 0.09 1.12 11.18 -17.55 -0.20 0.92 16 24 N -0.48 -7.20 10.04 -9.47 -0.10 -7.30 16 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.18 6.80 -40.82 -0.28 6.91 16 29 H 0.08 0.86 7.30 -51.93 -0.38 0.48 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.81 7.84 -51.93 -0.41 0.41 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.14 2.77 4.61 -52.49 -0.24 2.53 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -32.97 315.75 -8.79 -41.76 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.07 Total: 6.55 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -3.36 Total: 4.85 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.18 Total: -59.12 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.08 Total: -14.49 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.97 -8.79 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.145 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds