Wall clock time and date at job start Mon Mar 30 2020 01:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48507 * 109.46689 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47444 * 299.99464 * 3 2 1 6 6 H 1.48496 * 109.47416 * 59.99984 * 3 2 1 7 7 C 1.37871 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00183 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47231 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00076 * 180.02562 * 10 9 7 12 12 O 1.21588 * 120.00394 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99978 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64906 * 0.03730 * 13 11 10 15 15 C 1.54915 * 104.83334 * 204.09456 * 14 13 11 16 16 C 1.55165 * 101.57980 * 322.99105 * 15 14 13 17 17 C 1.47022 * 125.64758 * 179.97438 * 13 11 10 18 18 H 1.09001 * 110.01221 * 59.48592 * 17 13 11 19 19 C 1.50698 * 109.88394 * 298.39023 * 17 13 11 20 20 C 1.38229 * 119.61561 * 6.92121 * 19 17 13 21 21 C 1.38631 * 119.15693 * 179.70834 * 20 19 17 22 22 C 1.38668 * 118.42237 * 0.55195 * 21 20 19 23 23 C 1.38182 * 119.16336 * 359.73107 * 22 21 20 24 24 N 1.31854 * 119.61797 * 187.19121 * 19 17 13 25 25 H 0.97001 * 119.99935 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47429 * 59.99832 * 9 7 2 27 27 H 1.09000 * 109.46744 * 299.99771 * 9 7 2 28 28 H 0.96998 * 119.99913 * 359.97438 * 10 9 7 29 29 H 1.08997 * 110.36855 * 322.93198 * 14 13 11 30 30 H 1.08999 * 110.36490 * 85.14513 * 14 13 11 31 31 H 1.08995 * 111.00392 * 204.91661 * 15 14 13 32 32 H 1.09001 * 111.00387 * 81.05917 * 15 14 13 33 33 H 1.08993 * 110.71917 * 277.13865 * 16 15 14 34 34 H 1.09002 * 110.71751 * 153.86437 * 16 15 14 35 35 H 1.07997 * 120.42099 * 359.97438 * 20 19 17 36 36 H 1.07999 * 120.78487 * 180.30549 * 21 20 19 37 37 H 1.08007 * 120.41745 * 179.70968 * 22 21 20 38 38 H 1.07997 * 119.61509 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9077 0.0021 14 6 4.0985 -5.7822 0.0039 15 6 4.6107 -7.1103 -0.6074 16 6 3.5996 -8.1323 -0.0236 17 6 2.2783 -7.3353 0.0024 18 1 1.6845 -7.5735 -0.8801 19 6 1.5011 -7.6716 1.2489 20 6 1.1057 -6.6581 2.1017 21 6 0.3859 -6.9777 3.2425 22 6 0.0994 -8.3117 3.4901 23 6 0.5330 -9.2709 2.5949 24 7 1.2108 -8.9297 1.5162 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5566 0.8903 28 1 3.1566 -3.4354 0.0021 29 1 4.4079 -4.9373 -0.6113 30 1 4.4679 -5.6642 1.0226 31 1 5.6247 -7.3291 -0.2727 32 1 4.5569 -7.0858 -1.6958 33 1 3.8901 -8.4296 0.9840 34 1 3.5124 -9.0029 -0.6736 35 1 1.3507 -5.6300 1.8797 36 1 0.0595 -6.2064 3.9244 37 1 -0.4553 -8.5974 4.3717 38 1 0.3143 -10.3121 2.7808 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:03 Heat of formation + Delta-G solvation = -5.678067 kcal Electronic energy + Delta-G solvation = -21240.012146 eV Core-core repulsion = 18081.751815 eV Total energy + Delta-G solvation = -3158.260331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99444 -40.50486 -38.54933 -36.19474 -34.48597 -33.58357 -32.77716 -32.36446 -29.39958 -28.94230 -25.46041 -24.58037 -24.32212 -23.14834 -21.88082 -20.88076 -19.65032 -18.28058 -18.04353 -17.49460 -16.98714 -16.70306 -16.50069 -16.22996 -15.48629 -15.29351 -14.94038 -14.50246 -14.17488 -14.15690 -14.10154 -13.99998 -13.67258 -13.21222 -12.96182 -12.81641 -12.74047 -12.25882 -12.23674 -12.08873 -11.67609 -11.45810 -11.23341 -10.84428 -10.80225 -10.46206 -10.08934 -9.87357 -9.48575 -8.29663 -6.46300 0.16721 0.32512 1.42601 1.44469 1.56692 1.64385 2.13713 2.37647 2.82003 3.05542 3.13545 3.38705 3.57562 3.71600 3.91554 3.98553 4.13397 4.19600 4.23758 4.35910 4.52682 4.64229 4.75315 4.84481 4.86724 4.95801 5.04232 5.10723 5.15112 5.24303 5.27302 5.35527 5.40696 5.48924 5.67861 5.78097 5.83006 6.16960 6.65218 6.97860 7.14115 7.24019 7.65486 8.82950 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.004636 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.771385 B = 6038.842173 C = 6909.656682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.288 3.712 10 N -0.720 5.720 11 C 0.708 3.292 12 O -0.637 6.637 13 N -0.634 5.634 14 C 0.088 3.912 15 C -0.116 4.116 16 C -0.097 4.097 17 C 0.199 3.801 18 H 0.073 0.927 19 C 0.107 3.893 20 C -0.166 4.166 21 C -0.094 4.094 22 C -0.169 4.169 23 C 0.089 3.911 24 N -0.491 5.491 25 H 0.269 0.731 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.402 0.598 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.169 0.831 38 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.986 -17.637 4.313 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.165 3.835 10 N -0.374 5.374 11 C 0.411 3.589 12 O -0.519 6.519 13 N -0.373 5.373 14 C -0.034 4.034 15 C -0.154 4.154 16 C -0.135 4.135 17 C 0.094 3.906 18 H 0.091 0.909 19 C -0.030 4.030 20 C -0.186 4.186 21 C -0.120 4.120 22 C -0.188 4.188 23 C -0.068 4.068 24 N -0.201 5.201 25 H 0.078 0.922 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.238 0.762 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.155 0.845 37 H 0.186 0.814 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.200 -18.217 3.722 21.208 hybrid contribution -0.519 2.059 0.592 2.204 sum 9.681 -16.158 4.314 19.324 Atomic orbital electron populations 1.70153 1.08309 1.28517 1.49980 1.26055 0.95754 1.03840 0.93798 0.85094 0.79096 0.77214 0.77692 1.17567 1.20438 1.20423 1.21599 0.94255 0.90364 1.52892 0.89893 1.18409 0.88002 0.83232 0.93880 1.45360 1.10909 1.03546 1.77605 1.15721 0.84329 0.80985 0.77902 1.90888 1.16140 1.84478 1.60419 1.47677 1.07318 1.04116 1.78140 1.22626 0.77751 1.01000 1.02010 1.22812 1.00022 0.91253 1.01327 1.22528 0.90086 0.97828 1.03075 1.20212 0.97566 0.79791 0.93051 0.90922 1.21505 0.96544 0.88954 0.96039 1.22129 0.99860 1.00558 0.96056 1.21875 0.95555 0.98323 0.96297 1.22460 1.01472 0.92546 1.02354 1.23348 0.92897 1.01659 0.88918 1.67375 1.13743 1.18660 1.20289 0.92237 0.99771 0.99687 0.76182 0.89819 0.90658 0.86427 0.89583 0.90355 0.87622 0.87570 0.84456 0.81378 0.78988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 2 C 0.01 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.99 42.41 29.54 68.60 2.03 44.43 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.44 9.28 25.60 0.24 -30.20 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.29 16.27 5.43 85.63 0.46 16.73 16 10 N -0.72 -32.37 5.51 -482.31 -2.66 -35.03 16 11 C 0.71 31.23 6.28 179.06 1.12 32.35 16 12 O -0.64 -34.08 14.63 -3.99 -0.06 -34.14 16 13 N -0.63 -20.73 2.67 -810.02 -2.16 -22.90 16 14 C 0.09 1.94 6.57 86.86 0.57 2.51 16 15 C -0.12 -1.74 7.09 31.99 0.23 -1.52 16 16 C -0.10 -1.84 6.29 31.79 0.20 -1.64 16 17 C 0.20 5.93 3.34 44.60 0.15 6.08 16 18 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 19 C 0.11 3.52 5.88 42.55 0.25 3.77 16 20 C -0.17 -6.05 8.06 22.36 0.18 -5.87 16 21 C -0.09 -2.85 10.18 22.47 0.23 -2.62 16 22 C -0.17 -3.86 10.11 22.36 0.23 -3.63 16 23 C 0.09 2.04 11.18 84.67 0.95 2.99 16 24 N -0.49 -14.08 10.04 -183.89 -1.85 -15.93 16 25 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 28 H 0.40 15.20 6.80 -92.71 -0.63 14.57 16 29 H 0.08 1.75 7.30 -2.39 -0.02 1.73 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 1.48 7.84 -2.39 -0.02 1.47 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 4.56 4.61 -2.91 -0.01 4.55 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -77.36 315.75 1.30 -76.07 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.44 Total: 24.12 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: 5.27 Total: 19.70 kcal Atomic # 7 Polarization: -123.80 SS G_CDS: -6.38 Total: -130.19 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.06 Total: -34.14 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -77.36 1.30 -76.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.390 kcal (2) G-P(sol) polarization free energy of solvation -77.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds