Wall clock time and date at job start Mon Mar 30 2020 01:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48503 * 109.47298 * 274.83127 * 3 2 1 5 5 H 1.48505 * 109.47596 * 34.83005 * 3 2 1 6 6 H 1.48500 * 109.47201 * 154.83531 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 354.59915 * 7 2 1 9 9 C 1.50703 * 120.00266 * 174.88184 * 7 2 1 10 10 C 1.52996 * 115.55449 * 94.18854 * 9 7 2 11 11 N 1.46498 * 109.46796 * 55.23198 * 10 9 7 12 12 C 1.34777 * 120.00223 * 185.01445 * 11 10 9 13 13 O 1.21589 * 119.99945 * 5.20248 * 12 11 10 14 14 N 1.34779 * 120.00275 * 185.20084 * 12 11 10 15 15 N 1.40099 * 119.99947 * 5.29997 * 14 12 11 16 16 C 1.39675 * 119.99915 * 185.24739 * 15 14 12 17 17 C 1.38907 * 120.07309 * 359.73157 * 16 15 14 18 18 C 1.38113 * 119.92293 * 179.73783 * 17 16 15 19 19 C 1.38281 * 120.07257 * 0.51440 * 18 17 16 20 20 C 1.38284 * 120.14984 * 359.75966 * 19 18 17 21 21 C 1.38101 * 120.07619 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49267 * 308.52398 * 9 7 2 23 23 C 1.53000 * 117.49674 * 239.86899 * 9 7 2 24 24 H 0.97000 * 120.00125 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47164 * 175.22972 * 10 9 7 26 26 H 1.09001 * 109.47369 * 295.23886 * 10 9 7 27 27 H 0.97002 * 120.00177 * 5.01009 * 11 10 9 28 28 H 0.97003 * 119.99741 * 185.30873 * 14 12 11 29 29 H 0.96993 * 119.99718 * 5.25297 * 15 14 12 30 30 H 1.07998 * 120.04248 * 359.97438 * 17 16 15 31 31 H 1.07997 * 119.96076 * 180.25099 * 18 17 16 32 32 H 1.07999 * 119.92678 * 179.74474 * 19 18 17 33 33 H 1.08001 * 119.96230 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.03626 * 179.97438 * 21 20 19 35 35 H 1.09004 * 117.50493 * 359.97438 * 22 9 7 36 36 H 1.09004 * 117.50208 * 145.02107 * 22 9 7 37 37 H 1.09001 * 117.49397 * 214.97807 * 23 9 7 38 38 H 1.09001 * 117.50068 * 359.96546 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3945 2.1054 -1.3951 5 1 1.5013 2.6211 0.7996 6 1 3.5940 1.4129 0.5953 7 6 2.0045 -1.1940 0.0005 8 1 1.4682 -2.1272 0.0890 9 6 3.5071 -1.1967 -0.1159 10 6 4.2716 -1.2366 1.2088 11 7 3.8288 -2.3917 1.9934 12 6 4.2933 -2.5739 3.2455 13 8 5.0046 -1.7318 3.7586 14 7 3.9692 -3.6895 3.9288 15 7 3.2430 -4.7096 3.3006 16 6 2.8125 -5.8157 4.0369 17 6 3.1083 -5.9084 5.3910 18 6 2.6764 -7.0009 6.1173 19 6 1.9595 -8.0067 5.4957 20 6 1.6681 -7.9203 4.1467 21 6 2.0922 -6.8280 3.4157 22 6 4.1278 -0.4013 -1.2661 23 6 4.1218 -1.9314 -1.3089 24 1 -0.4850 0.8400 -0.0004 25 1 5.3398 -1.3207 1.0093 26 1 4.0773 -0.3214 1.7681 27 1 3.2013 -3.0255 1.6119 28 1 4.2387 -3.7860 4.8557 29 1 3.0393 -4.6478 2.3543 30 1 3.6721 -5.1254 5.8761 31 1 2.9026 -7.0717 7.1709 32 1 1.6264 -8.8619 6.0650 33 1 1.1076 -8.7074 3.6643 34 1 1.8647 -6.7613 2.3620 35 1 3.4495 0.1235 -1.9388 36 1 5.0811 0.0932 -1.0793 37 1 5.0711 -2.4430 -1.1500 38 1 3.4396 -2.4133 -2.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797562972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:48 Heat of formation + Delta-G solvation = 68.064447 kcal Electronic energy + Delta-G solvation = -20631.504384 eV Core-core repulsion = 17476.441767 eV Total energy + Delta-G solvation = -3155.062616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09386 -39.06362 -37.23070 -36.02296 -33.50587 -32.17832 -31.82677 -30.87493 -27.94573 -26.65968 -25.27543 -22.92635 -22.07912 -21.82797 -20.50405 -19.57061 -18.36467 -18.27399 -16.54843 -16.08960 -15.88752 -15.36556 -15.02444 -14.92367 -14.37770 -14.08099 -13.88903 -13.58929 -13.42848 -13.18174 -12.88390 -12.59271 -12.25156 -11.61248 -11.54036 -11.22663 -11.09751 -10.88461 -10.52791 -10.23678 -10.12537 -9.69182 -9.33477 -9.23152 -9.02223 -8.72927 -8.66014 -8.40275 -7.21299 -6.21609 -4.26425 1.34688 1.50574 2.08571 3.24133 3.36050 3.36621 3.42700 3.50677 3.82825 4.35375 4.70314 4.79202 4.86072 5.00996 5.09535 5.17469 5.37603 5.51252 5.60783 5.74524 5.91185 5.95911 5.99246 6.15432 6.19391 6.31520 6.36851 6.43810 6.53525 6.55021 6.64858 6.86221 6.89183 6.99307 7.02549 7.40204 7.56056 7.61861 8.33029 8.44002 8.76281 8.81606 9.41600 10.89499 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.004266 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.710201 B = 6561.274744 C = 6881.881449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.081 3.919 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.493 4.493 8 H 0.077 0.923 9 C -0.017 4.017 10 C 0.172 3.828 11 N -0.713 5.713 12 C 0.708 3.292 13 O -0.589 6.589 14 N -0.540 5.540 15 N -0.545 5.545 16 C 0.225 3.775 17 C -0.201 4.201 18 C -0.068 4.068 19 C -0.184 4.184 20 C -0.067 4.067 21 C -0.190 4.190 22 C -0.191 4.191 23 C -0.181 4.181 24 H 0.266 0.734 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.398 0.602 28 H 0.427 0.573 29 H 0.426 0.574 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 -13.469 6.726 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.123 4.123 3 Si 0.709 3.291 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.181 1.181 7 C -0.530 4.530 8 H 0.095 0.905 9 C -0.018 4.018 10 C 0.048 3.952 11 N -0.368 5.368 12 C 0.407 3.593 13 O -0.465 6.465 14 N -0.295 5.295 15 N -0.274 5.274 16 C 0.121 3.879 17 C -0.224 4.224 18 C -0.087 4.087 19 C -0.204 4.204 20 C -0.086 4.086 21 C -0.214 4.214 22 C -0.229 4.229 23 C -0.218 4.218 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.233 0.767 28 H 0.272 0.728 29 H 0.269 0.731 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.922 -12.458 6.977 15.458 hybrid contribution -0.028 0.717 -0.217 0.750 sum 5.894 -11.741 6.760 14.774 Atomic orbital electron populations 1.69889 1.06422 1.27353 1.49233 1.24979 0.94592 0.99213 0.93470 0.86826 0.80907 0.83247 0.78087 1.20563 1.22117 1.18071 1.20104 0.86262 0.94565 1.52042 0.90508 1.19618 0.95642 1.00881 0.85653 1.21030 0.95318 0.87146 0.91727 1.44992 1.48628 1.29806 1.13335 1.15786 0.80953 0.80598 0.81916 1.90971 1.43590 1.42586 1.69314 1.44498 1.58338 1.12108 1.14566 1.43429 1.59275 1.15008 1.09653 1.17743 0.93120 0.85858 0.91227 1.20451 1.08081 1.01224 0.92648 1.20850 0.95752 0.92900 0.99218 1.20900 1.04010 1.00299 0.95188 1.20851 0.97204 0.96530 0.93973 1.20500 1.04955 0.95298 1.00660 1.22904 1.01336 0.94303 1.04349 1.22929 1.00983 0.93692 1.04196 0.92427 0.93844 0.91589 0.76676 0.72786 0.73091 0.86574 0.86189 0.86490 0.85920 0.85609 0.89083 0.90557 0.90887 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 16 2 C 0.08 2.21 5.46 -17.82 -0.10 2.11 16 3 Si 0.88 21.24 24.74 -169.99 -4.20 17.03 16 4 H -0.28 -6.57 7.09 56.52 0.40 -6.17 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -5.94 5.79 56.52 0.33 -5.61 16 7 C -0.49 -12.59 8.86 -34.44 -0.31 -12.90 16 8 H 0.08 2.10 8.06 -52.49 -0.42 1.67 16 9 C -0.02 -0.36 0.97 -155.66 -0.15 -0.51 16 10 C 0.17 3.52 5.43 -4.04 -0.02 3.50 16 11 N -0.71 -13.16 5.28 -65.23 -0.34 -13.51 16 12 C 0.71 12.99 8.66 -86.92 -0.75 12.24 16 13 O -0.59 -12.75 17.16 5.29 0.09 -12.66 16 14 N -0.54 -7.83 6.21 27.64 0.17 -7.66 16 15 N -0.54 -6.98 6.40 32.41 0.21 -6.77 16 16 C 0.22 2.70 6.72 -83.79 -0.56 2.14 16 17 C -0.20 -2.25 9.48 -39.38 -0.37 -2.63 16 18 C -0.07 -0.68 10.04 -39.61 -0.40 -1.08 16 19 C -0.18 -1.75 10.04 -39.55 -0.40 -2.15 16 20 C -0.07 -0.65 10.04 -39.61 -0.40 -1.05 16 21 C -0.19 -2.07 9.90 -39.38 -0.39 -2.46 16 22 C -0.19 -3.83 7.37 -26.70 -0.20 -4.03 16 23 C -0.18 -3.35 9.93 -26.70 -0.27 -3.62 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.04 0.84 8.09 -51.93 -0.42 0.41 16 26 H 0.07 1.51 7.03 -51.93 -0.37 1.15 16 27 H 0.40 6.82 6.19 -40.82 -0.25 6.57 16 28 H 0.43 5.50 6.72 -182.59 -1.23 4.27 16 29 H 0.43 5.20 6.86 -182.60 -1.25 3.95 16 30 H 0.12 1.19 6.22 -52.49 -0.33 0.86 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.09 1.93 6.72 -51.93 -0.35 1.58 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 317.50 15.07 4.78 4.78 Total: -1.00 -30.84 317.50 -9.62 -40.46 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.79 Total: 14.04 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -4.31 Total: -10.42 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.81 Total: -53.24 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.20 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.84 -9.62 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.520 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds