Wall clock time and date at job start Mon Mar 30 2020 01:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99738 * 2 1 4 4 H 1.48503 * 109.47298 * 274.83127 * 3 2 1 5 5 H 1.48505 * 109.47596 * 34.83005 * 3 2 1 6 6 H 1.48500 * 109.47201 * 154.83531 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00299 * 354.59915 * 7 2 1 9 9 C 1.50703 * 120.00266 * 174.88184 * 7 2 1 10 10 C 1.52996 * 115.55449 * 94.18854 * 9 7 2 11 11 N 1.46498 * 109.46796 * 55.23198 * 10 9 7 12 12 C 1.34777 * 120.00223 * 185.01445 * 11 10 9 13 13 O 1.21589 * 119.99945 * 5.20248 * 12 11 10 14 14 N 1.34779 * 120.00275 * 185.20084 * 12 11 10 15 15 N 1.40099 * 119.99947 * 5.29997 * 14 12 11 16 16 C 1.39675 * 119.99915 * 185.24739 * 15 14 12 17 17 C 1.38907 * 120.07309 * 359.73157 * 16 15 14 18 18 C 1.38113 * 119.92293 * 179.73783 * 17 16 15 19 19 C 1.38281 * 120.07257 * 0.51440 * 18 17 16 20 20 C 1.38284 * 120.14984 * 359.75966 * 19 18 17 21 21 C 1.38101 * 120.07619 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49267 * 308.52398 * 9 7 2 23 23 C 1.53000 * 117.49674 * 239.86899 * 9 7 2 24 24 H 0.97000 * 120.00125 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47164 * 175.22972 * 10 9 7 26 26 H 1.09001 * 109.47369 * 295.23886 * 10 9 7 27 27 H 0.97002 * 120.00177 * 5.01009 * 11 10 9 28 28 H 0.97003 * 119.99741 * 185.30873 * 14 12 11 29 29 H 0.96993 * 119.99718 * 5.25297 * 15 14 12 30 30 H 1.07998 * 120.04248 * 359.97438 * 17 16 15 31 31 H 1.07997 * 119.96076 * 180.25099 * 18 17 16 32 32 H 1.07999 * 119.92678 * 179.74474 * 19 18 17 33 33 H 1.08001 * 119.96230 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.03626 * 179.97438 * 21 20 19 35 35 H 1.09004 * 117.50493 * 359.97438 * 22 9 7 36 36 H 1.09004 * 117.50208 * 145.02107 * 22 9 7 37 37 H 1.09001 * 117.49397 * 214.97807 * 23 9 7 38 38 H 1.09001 * 117.50068 * 359.96546 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3945 2.1054 -1.3951 5 1 1.5013 2.6211 0.7996 6 1 3.5940 1.4129 0.5953 7 6 2.0045 -1.1940 0.0005 8 1 1.4682 -2.1272 0.0890 9 6 3.5071 -1.1967 -0.1159 10 6 4.2716 -1.2366 1.2088 11 7 3.8288 -2.3917 1.9934 12 6 4.2933 -2.5739 3.2455 13 8 5.0046 -1.7318 3.7586 14 7 3.9692 -3.6895 3.9288 15 7 3.2430 -4.7096 3.3006 16 6 2.8125 -5.8157 4.0369 17 6 3.1083 -5.9084 5.3910 18 6 2.6764 -7.0009 6.1173 19 6 1.9595 -8.0067 5.4957 20 6 1.6681 -7.9203 4.1467 21 6 2.0922 -6.8280 3.4157 22 6 4.1278 -0.4013 -1.2661 23 6 4.1218 -1.9314 -1.3089 24 1 -0.4850 0.8400 -0.0004 25 1 5.3398 -1.3207 1.0093 26 1 4.0773 -0.3214 1.7681 27 1 3.2013 -3.0255 1.6119 28 1 4.2387 -3.7860 4.8557 29 1 3.0393 -4.6478 2.3543 30 1 3.6721 -5.1254 5.8761 31 1 2.9026 -7.0717 7.1709 32 1 1.6264 -8.8619 6.0650 33 1 1.1076 -8.7074 3.6643 34 1 1.8647 -6.7613 2.3620 35 1 3.4495 0.1235 -1.9388 36 1 5.0811 0.0932 -1.0793 37 1 5.0711 -2.4430 -1.1500 38 1 3.4396 -2.4133 -2.0092 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797562972.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:47 Heat of formation + Delta-G solvation = 47.670008 kcal Electronic energy + Delta-G solvation = -20632.388753 eV Core-core repulsion = 17476.441767 eV Total energy + Delta-G solvation = -3155.946985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37595 -40.07535 -38.83629 -37.16640 -35.02579 -34.20764 -32.86452 -31.68732 -28.92235 -28.32811 -27.11930 -23.82850 -23.39379 -22.95207 -21.80714 -21.23736 -19.72418 -19.38471 -18.25442 -17.23001 -16.95069 -16.87466 -16.61339 -16.24810 -15.81614 -15.23257 -14.91377 -14.73613 -14.71361 -14.57044 -14.23309 -14.18113 -13.87798 -13.11354 -12.73271 -12.55172 -12.36285 -12.17692 -11.96891 -11.85987 -11.72186 -11.55205 -10.95646 -10.67370 -10.48781 -10.35565 -9.89743 -9.81588 -8.31084 -8.20809 -6.36601 0.55057 0.67593 0.96768 1.32383 1.40302 1.50298 1.95363 2.13270 2.35714 3.01451 3.03721 3.22388 3.80208 3.99748 4.02687 4.15571 4.37141 4.38958 4.42987 4.53048 4.64924 4.70170 4.70578 4.86523 4.92152 5.10232 5.14147 5.26678 5.31774 5.42608 5.47590 5.50000 5.65453 5.69763 5.76950 6.00278 6.20809 6.26397 6.52671 6.71032 7.14233 7.33787 7.42972 8.83330 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022436 B = 0.004266 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.710201 B = 6561.274744 C = 6881.881449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.026 3.974 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.307 1.307 6 H -0.240 1.240 7 C -0.477 4.477 8 H 0.048 0.952 9 C -0.041 4.041 10 C 0.180 3.820 11 N -0.713 5.713 12 C 0.707 3.293 13 O -0.625 6.625 14 N -0.526 5.526 15 N -0.547 5.547 16 C 0.202 3.798 17 C -0.214 4.214 18 C -0.075 4.075 19 C -0.183 4.183 20 C -0.072 4.072 21 C -0.199 4.199 22 C -0.193 4.193 23 C -0.152 4.152 24 H 0.264 0.736 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.403 0.597 28 H 0.435 0.565 29 H 0.427 0.573 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -14.939 6.864 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.193 1.193 5 H -0.235 1.235 6 H -0.163 1.163 7 C -0.515 4.515 8 H 0.066 0.934 9 C -0.042 4.042 10 C 0.056 3.944 11 N -0.367 5.367 12 C 0.406 3.594 13 O -0.504 6.504 14 N -0.280 5.280 15 N -0.279 5.279 16 C 0.100 3.900 17 C -0.238 4.238 18 C -0.093 4.093 19 C -0.203 4.203 20 C -0.091 4.091 21 C -0.223 4.223 22 C -0.230 4.230 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.239 0.761 28 H 0.282 0.718 29 H 0.270 0.730 30 H 0.138 0.862 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.393 -13.997 7.130 17.361 hybrid contribution -0.544 0.960 -0.204 1.122 sum 6.849 -13.038 6.926 16.275 Atomic orbital electron populations 1.70018 1.08075 1.27831 1.52318 1.25704 0.95074 1.02432 0.93969 0.86041 0.80344 0.79570 0.78459 1.19350 1.23472 1.16325 1.20310 0.88714 0.93015 1.49440 0.93416 1.19467 0.93271 1.04330 0.87142 1.20814 0.96210 0.86686 0.90736 1.44883 1.48860 1.29496 1.13505 1.15804 0.80796 0.81047 0.81794 1.90939 1.45190 1.44205 1.70074 1.44188 1.57527 1.11632 1.14618 1.43440 1.59893 1.14814 1.09742 1.17981 0.94283 0.85961 0.91757 1.20678 1.08436 1.02028 0.92616 1.21180 0.95372 0.92439 1.00359 1.21284 1.02927 1.00726 0.95338 1.21206 0.96962 0.96637 0.94291 1.20747 1.04745 0.95393 1.01376 1.22985 1.01887 0.95487 1.02678 1.22952 1.01737 0.93026 1.01222 0.92746 0.91881 0.94368 0.76050 0.71828 0.72975 0.86198 0.84017 0.84106 0.83601 0.84800 0.90444 0.88054 0.87662 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.73 13.96 21.44 0.30 -56.43 16 2 C 0.03 1.46 5.46 84.65 0.46 1.93 16 3 Si 0.93 43.81 24.74 68.60 1.70 45.51 16 4 H -0.27 -12.03 7.09 99.48 0.71 -11.32 16 5 H -0.31 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.24 -10.58 5.79 99.48 0.58 -10.00 16 7 C -0.48 -24.57 8.86 25.60 0.23 -24.34 16 8 H 0.05 2.67 8.06 -2.91 -0.02 2.65 16 9 C -0.04 -1.68 0.97 -52.93 -0.05 -1.74 16 10 C 0.18 7.14 5.43 86.38 0.47 7.61 16 11 N -0.71 -25.87 5.28 -478.55 -2.53 -28.40 16 12 C 0.71 25.65 8.66 179.05 1.55 27.20 16 13 O -0.63 -26.97 17.16 -4.00 -0.07 -27.03 16 14 N -0.53 -15.02 6.21 -184.74 -1.15 -16.17 16 15 N -0.55 -13.78 6.40 -51.37 -0.33 -14.10 16 16 C 0.20 4.69 6.72 38.21 0.26 4.95 16 17 C -0.21 -4.57 9.48 22.40 0.21 -4.36 16 18 C -0.07 -1.33 10.04 22.25 0.22 -1.11 16 19 C -0.18 -3.00 10.04 22.29 0.22 -2.78 16 20 C -0.07 -1.25 10.04 22.25 0.22 -1.02 16 21 C -0.20 -4.07 9.90 22.40 0.22 -3.85 16 22 C -0.19 -7.19 7.37 30.62 0.23 -6.96 16 23 C -0.15 -5.19 9.93 30.62 0.30 -4.88 16 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 25 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 26 H 0.04 1.72 7.03 -2.39 -0.02 1.70 16 27 H 0.40 13.69 6.19 -92.71 -0.57 13.11 16 28 H 0.44 11.00 6.72 -213.32 -1.43 9.57 16 29 H 0.43 10.29 6.86 -213.33 -1.46 8.82 16 30 H 0.12 2.35 6.22 -2.91 -0.02 2.34 16 31 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.08 3.12 6.72 -2.38 -0.02 3.10 16 36 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16 37 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -66.96 317.50 -0.03 -66.99 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -2.50 Total: 39.00 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.55 Total: -9.36 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.71 Total: -115.10 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.07 Total: -27.03 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.70 Total: 45.51 kcal Total: -66.96 -0.03 -66.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797562972.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.661 kcal (2) G-P(sol) polarization free energy of solvation -66.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds