Wall clock time and date at job start Mon Mar 30 2020 01:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47096 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.47258 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.46769 * 150.00177 * 3 2 1 7 7 C 1.38954 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99535 * 0.02562 * 7 2 1 9 9 N 1.37088 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99934 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00055 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00061 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.48533 * 110.99837 * 307.39628 * 13 12 10 15 15 C 1.54932 * 103.22924 * 200.27848 * 14 13 12 16 16 C 1.54600 * 102.92168 * 37.41145 * 15 14 13 17 17 H 1.09006 * 110.38783 * 97.00238 * 16 15 14 18 18 C 1.50697 * 110.30888 * 219.12770 * 16 15 14 19 19 C 1.38221 * 119.62206 * 79.38586 * 18 16 15 20 20 C 1.38626 * 119.16603 * 180.02562 * 19 18 16 21 21 C 1.38671 * 118.41965 * 359.97438 * 20 19 18 22 22 C 1.38181 * 119.16214 * 0.02562 * 21 20 19 23 23 N 1.31862 * 119.61736 * 259.40272 * 18 16 15 24 24 C 1.47901 * 111.00306 * 190.00232 * 13 12 10 25 25 H 0.97007 * 119.99958 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00445 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47387 * 59.99339 * 12 10 9 28 28 H 1.08999 * 109.46834 * 299.99688 * 12 10 9 29 29 H 1.09007 * 110.66739 * 318.71002 * 14 13 12 30 30 H 1.09003 * 110.67239 * 81.84027 * 14 13 12 31 31 H 1.09000 * 110.72744 * 279.05552 * 15 14 13 32 32 H 1.09000 * 110.72858 * 155.76816 * 15 14 13 33 33 H 1.08013 * 120.41442 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.78938 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.41608 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.61907 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.91460 * 26.48230 * 24 13 12 38 38 H 1.09007 * 110.07703 * 265.28566 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3707 0.0022 13 7 6.0503 -3.7557 0.0026 14 6 5.4328 -4.5382 1.1038 15 6 6.4076 -5.7292 1.2822 16 6 7.7921 -5.0798 1.0551 17 1 8.2541 -4.8270 2.0096 18 6 8.6839 -6.0093 0.2731 19 6 8.5367 -6.1046 -1.0980 20 6 9.3617 -6.9631 -1.8079 21 6 10.3087 -7.6966 -1.1092 22 6 10.3975 -7.5489 0.2618 23 7 9.5954 -6.7227 0.9047 24 6 7.5088 -3.8022 0.2436 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3634 0.0014 27 1 5.9233 -1.8572 0.8927 28 1 5.9246 -1.8565 -0.8873 29 1 5.3808 -3.9437 2.0160 30 1 4.4424 -4.8914 0.8165 31 1 6.2159 -6.4998 0.5355 32 1 6.3347 -6.1398 2.2893 33 1 7.7877 -5.5182 -1.6096 34 1 9.2692 -7.0583 -2.8798 35 1 10.9679 -8.3753 -1.6300 36 1 11.1320 -8.1169 0.8134 37 1 7.8195 -2.9250 0.8112 38 1 8.0439 -3.8388 -0.7054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799190112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:07 Heat of formation + Delta-G solvation = 17.575371 kcal Electronic energy + Delta-G solvation = -20599.106246 eV Core-core repulsion = 17441.854259 eV Total energy + Delta-G solvation = -3157.251987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60509 -39.11288 -37.56072 -34.10431 -33.15428 -32.48915 -31.71061 -30.54443 -28.34362 -26.89045 -24.30024 -23.60073 -23.02574 -21.11985 -20.27527 -19.41098 -18.27951 -17.18197 -16.61267 -15.93158 -15.54774 -15.39243 -14.99882 -14.74817 -14.36153 -14.08494 -13.76537 -13.35895 -13.24529 -12.86480 -12.59965 -12.37995 -12.12781 -11.89358 -11.75967 -11.50866 -11.32604 -11.05618 -10.91797 -10.62306 -10.55619 -9.99442 -9.98865 -9.57041 -9.54389 -9.07696 -8.46894 -8.20907 -8.02870 -6.32580 -3.83971 0.96355 1.14727 3.01663 3.06189 3.14390 3.62992 3.71328 4.00565 4.08565 4.12235 4.52497 4.64721 4.70364 4.88335 4.94059 4.98900 5.03455 5.17140 5.22092 5.45022 5.51899 5.55111 5.62840 5.70520 5.76383 5.81468 5.89322 5.93350 5.99375 6.06133 6.11988 6.32350 6.56154 6.65018 7.15136 7.19127 7.56799 7.86900 8.13353 8.58222 8.93707 9.40752 9.81126 10.80435 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.003313 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.116014 B = 8449.641739 C = 8558.936065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.451 3.549 11 O -0.562 6.562 12 C 0.033 3.967 13 N -0.494 5.494 14 C 0.037 3.963 15 C -0.112 4.112 16 C -0.052 4.052 17 H 0.092 0.908 18 C 0.146 3.854 19 C -0.162 4.162 20 C -0.076 4.076 21 C -0.183 4.183 22 C 0.096 3.904 23 N -0.486 5.486 24 C 0.037 3.963 25 H 0.273 0.727 26 H 0.371 0.629 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.153 0.847 37 H 0.048 0.952 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.908 -9.029 -0.686 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.237 3.763 11 O -0.444 6.444 12 C -0.099 4.099 13 N -0.219 5.219 14 C -0.090 4.090 15 C -0.150 4.150 16 C -0.071 4.071 17 H 0.110 0.890 18 C 0.008 3.992 19 C -0.181 4.181 20 C -0.102 4.102 21 C -0.203 4.203 22 C -0.061 4.061 23 N -0.195 5.195 24 C -0.092 4.092 25 H 0.084 0.916 26 H 0.203 0.797 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.066 0.934 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 20.227 -9.741 -0.294 22.452 hybrid contribution 0.849 1.751 -0.205 1.957 sum 21.075 -7.990 -0.499 22.545 Atomic orbital electron populations 1.69621 1.05652 1.27520 1.49276 1.25041 0.95490 0.97992 0.97616 0.86674 0.79760 0.84046 0.78926 1.19572 1.20189 1.19521 1.19428 0.79189 0.96638 1.48088 0.86227 1.42198 1.07558 1.06130 1.66903 1.19610 0.88124 0.84549 0.84004 1.90478 1.69491 1.30528 1.53944 1.22145 0.95370 0.90670 1.01719 1.64621 1.02342 1.10540 1.44378 1.23531 1.00537 0.93124 0.91793 1.22616 0.91967 0.98541 1.01914 1.20960 0.94804 0.93134 0.98251 0.88975 1.21146 0.92610 0.94263 0.91190 1.22158 1.00712 1.00041 0.95216 1.21628 0.93831 0.94106 1.00598 1.22109 1.00518 1.01678 0.96022 1.22697 0.96533 0.94965 0.91911 1.67483 1.04683 1.06361 1.41007 1.23116 0.90661 0.95859 0.99547 0.91594 0.79672 0.93141 0.89073 0.94295 0.86094 0.90783 0.90849 0.83619 0.84873 0.85078 0.83012 0.93397 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.25 27.74 -169.99 -4.72 14.53 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.59 -13.87 5.09 -10.96 -0.06 -13.92 16 10 C 0.45 10.06 7.49 -10.98 -0.08 9.98 16 11 O -0.56 -14.48 13.09 5.55 0.07 -14.41 16 12 C 0.03 0.55 5.52 -4.98 -0.03 0.52 16 13 N -0.49 -7.82 5.26 -231.89 -1.22 -9.04 16 14 C 0.04 0.60 5.30 -1.90 -0.01 0.59 16 15 C -0.11 -1.49 6.59 -24.87 -0.16 -1.65 16 16 C -0.05 -0.63 3.36 -90.42 -0.30 -0.94 16 17 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.15 1.78 5.67 -82.59 -0.47 1.31 16 19 C -0.16 -1.80 8.69 -39.44 -0.34 -2.14 16 20 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 21 C -0.18 -1.56 10.11 -39.44 -0.40 -1.96 16 22 C 0.10 0.94 11.18 -17.55 -0.20 0.74 16 23 N -0.49 -6.04 10.27 -9.48 -0.10 -6.13 16 24 C 0.04 0.46 5.83 -2.76 -0.02 0.44 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 27 H 0.05 0.75 7.81 -51.93 -0.41 0.35 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.04 0.64 8.02 -51.92 -0.42 0.22 16 30 H 0.12 2.38 5.97 -51.93 -0.31 2.07 16 31 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.15 1.64 6.84 -52.48 -0.36 1.28 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.05 0.56 7.57 -51.93 -0.39 0.17 16 38 H 0.08 0.96 6.10 -51.93 -0.32 0.64 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -32.18 311.93 -8.13 -40.31 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.94 Total: 10.64 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.66 Total: -1.84 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.60 Total: -53.93 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.72 Total: 14.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.18 -8.13 -40.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799190112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.887 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds