Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47096 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.47258 * 30.00191 * 3 2 1 6 6 H 1.48501 * 109.46769 * 150.00177 * 3 2 1 7 7 C 1.38954 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99535 * 0.02562 * 7 2 1 9 9 N 1.37088 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99934 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00055 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00061 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.48533 * 110.99837 * 307.39628 * 13 12 10 15 15 C 1.54932 * 103.22924 * 200.27848 * 14 13 12 16 16 C 1.54600 * 102.92168 * 37.41145 * 15 14 13 17 17 H 1.09006 * 110.38783 * 97.00238 * 16 15 14 18 18 C 1.50697 * 110.30888 * 219.12770 * 16 15 14 19 19 C 1.38221 * 119.62206 * 79.38586 * 18 16 15 20 20 C 1.38626 * 119.16603 * 180.02562 * 19 18 16 21 21 C 1.38671 * 118.41965 * 359.97438 * 20 19 18 22 22 C 1.38181 * 119.16214 * 0.02562 * 21 20 19 23 23 N 1.31862 * 119.61736 * 259.40272 * 18 16 15 24 24 C 1.47901 * 111.00306 * 190.00232 * 13 12 10 25 25 H 0.97007 * 119.99958 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00445 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47387 * 59.99339 * 12 10 9 28 28 H 1.08999 * 109.46834 * 299.99688 * 12 10 9 29 29 H 1.09007 * 110.66739 * 318.71002 * 14 13 12 30 30 H 1.09003 * 110.67239 * 81.84027 * 14 13 12 31 31 H 1.09000 * 110.72744 * 279.05552 * 15 14 13 32 32 H 1.09000 * 110.72858 * 155.76816 * 15 14 13 33 33 H 1.08013 * 120.41442 * 359.97438 * 19 18 16 34 34 H 1.08002 * 120.78938 * 179.97438 * 20 19 18 35 35 H 1.08002 * 120.41608 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.61907 * 179.97438 * 22 21 20 37 37 H 1.08999 * 109.91460 * 26.48230 * 24 13 12 38 38 H 1.09007 * 110.07703 * 265.28566 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3797 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3707 0.0022 13 7 6.0503 -3.7557 0.0026 14 6 5.4328 -4.5382 1.1038 15 6 6.4076 -5.7292 1.2822 16 6 7.7921 -5.0798 1.0551 17 1 8.2541 -4.8270 2.0096 18 6 8.6839 -6.0093 0.2731 19 6 8.5367 -6.1046 -1.0980 20 6 9.3617 -6.9631 -1.8079 21 6 10.3087 -7.6966 -1.1092 22 6 10.3975 -7.5489 0.2618 23 7 9.5954 -6.7227 0.9047 24 6 7.5088 -3.8022 0.2436 25 1 -0.4850 0.8401 -0.0004 26 1 3.8648 -0.3634 0.0014 27 1 5.9233 -1.8572 0.8927 28 1 5.9246 -1.8565 -0.8873 29 1 5.3808 -3.9437 2.0160 30 1 4.4424 -4.8914 0.8165 31 1 6.2159 -6.4998 0.5355 32 1 6.3347 -6.1398 2.2893 33 1 7.7877 -5.5182 -1.6096 34 1 9.2692 -7.0583 -2.8798 35 1 10.9679 -8.3753 -1.6300 36 1 11.1320 -8.1169 0.8134 37 1 7.8195 -2.9250 0.8112 38 1 8.0439 -3.8388 -0.7054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799190112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = -6.790094 kcal Electronic energy + Delta-G solvation = -20600.162812 eV Core-core repulsion = 17441.854259 eV Total energy + Delta-G solvation = -3158.308553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49073 -40.56239 -38.98188 -36.03102 -34.26386 -33.74553 -33.28003 -31.60479 -29.40701 -28.37513 -25.97558 -24.44475 -23.92893 -22.40982 -21.31270 -21.19764 -20.17521 -18.03667 -17.70171 -17.41046 -16.81307 -16.51410 -16.31917 -16.14395 -15.67654 -15.13127 -14.93472 -14.88766 -14.50456 -14.24207 -14.02592 -13.81363 -13.32303 -13.15546 -13.00117 -12.66103 -12.52650 -12.41705 -12.33189 -12.00180 -11.97397 -11.73502 -11.46589 -10.75383 -10.33372 -10.29112 -10.23179 -9.78913 -9.32617 -8.41010 -6.01589 0.21121 0.41187 1.30471 1.35832 1.44551 1.94964 2.23215 2.66917 2.87247 3.14710 3.20416 3.26954 3.60053 3.85903 4.01978 4.06978 4.15926 4.20068 4.28996 4.31952 4.37103 4.41805 4.52235 4.58613 4.73404 4.80815 4.87464 4.94534 5.03652 5.11239 5.26482 5.33048 5.37714 5.53620 5.84536 5.89265 5.92648 6.07031 6.59772 6.89099 7.09848 7.39651 7.96929 8.76588 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045361 B = 0.003313 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.116014 B = 8449.641739 C = 8558.936065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.232 1.232 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.604 6.604 12 C 0.043 3.957 13 N -0.510 5.510 14 C 0.039 3.961 15 C -0.102 4.102 16 C -0.044 4.044 17 H 0.096 0.904 18 C 0.127 3.873 19 C -0.174 4.174 20 C -0.079 4.079 21 C -0.175 4.175 22 C 0.085 3.915 23 N -0.512 5.512 24 C 0.042 3.958 25 H 0.279 0.721 26 H 0.389 0.611 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.066 0.934 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.020 -7.936 -1.134 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.455 4.455 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.488 6.488 12 C -0.088 4.088 13 N -0.235 5.235 14 C -0.088 4.088 15 C -0.140 4.140 16 C -0.064 4.064 17 H 0.114 0.886 18 C -0.010 4.010 19 C -0.194 4.194 20 C -0.105 4.105 21 C -0.194 4.194 22 C -0.072 4.072 23 N -0.222 5.222 24 C -0.085 4.085 25 H 0.088 0.912 26 H 0.225 0.775 27 H 0.098 0.902 28 H 0.140 0.860 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.194 0.806 37 H 0.084 0.916 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.373 -8.662 -0.742 25.877 hybrid contribution -0.434 1.190 -0.097 1.271 sum 23.938 -7.472 -0.839 25.091 Atomic orbital electron populations 1.69805 1.08145 1.29220 1.50402 1.26106 0.96450 1.02702 0.96127 0.85372 0.79460 0.76787 0.79950 1.18118 1.20121 1.15496 1.18997 0.81422 0.94928 1.50195 0.92560 1.42023 1.05838 1.07540 1.67839 1.20817 0.90758 0.83410 0.81254 1.90495 1.71325 1.32166 1.54818 1.22124 0.90288 0.91914 1.04508 1.64587 1.04433 1.10031 1.44419 1.23293 0.99392 0.94443 0.91681 1.22483 0.92225 0.97153 1.02161 1.20853 0.93885 0.93046 0.98568 0.88558 1.21083 0.93275 0.95051 0.91599 1.22186 1.01263 1.00925 0.95023 1.21979 0.93288 0.93331 1.01870 1.22478 1.00139 1.01193 0.95629 1.23223 0.96465 0.94552 0.92948 1.67452 1.05453 1.07326 1.41966 1.23142 0.88137 0.96659 1.00612 0.91168 0.77514 0.90227 0.85970 0.94678 0.90381 0.91667 0.89954 0.84238 0.82547 0.81837 0.80552 0.91615 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.48 13.96 21.66 0.30 -56.18 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.96 38.73 27.74 68.60 1.90 40.63 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 7 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.89 16 9 N -0.59 -27.76 5.09 -306.99 -1.56 -29.32 16 10 C 0.45 20.19 7.49 87.66 0.66 20.84 16 11 O -0.60 -32.77 13.09 -3.05 -0.04 -32.81 16 12 C 0.04 1.33 5.52 85.56 0.47 1.80 16 13 N -0.51 -15.55 5.26 -887.58 -4.67 -20.22 16 14 C 0.04 1.31 5.30 86.65 0.46 1.77 16 15 C -0.10 -2.70 6.59 31.80 0.21 -2.49 16 16 C -0.04 -1.01 3.36 -10.66 -0.04 -1.05 16 17 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 18 C 0.13 2.93 5.67 42.55 0.24 3.17 16 19 C -0.17 -3.60 8.69 22.36 0.19 -3.41 16 20 C -0.08 -1.25 10.18 22.47 0.23 -1.02 16 21 C -0.17 -2.41 10.11 22.36 0.23 -2.18 16 22 C 0.08 1.44 11.18 84.67 0.95 2.39 16 23 N -0.51 -11.83 10.27 -183.89 -1.89 -13.72 16 24 C 0.04 0.96 5.83 86.44 0.50 1.46 16 25 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 26 H 0.39 15.13 5.76 -92.71 -0.53 14.60 16 27 H 0.08 2.06 7.81 -2.39 -0.02 2.04 16 28 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.03 1.16 8.02 -2.38 -0.02 1.14 16 30 H 0.08 3.29 5.97 -2.39 -0.01 3.27 16 31 H 0.06 1.83 7.83 -2.39 -0.02 1.81 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.14 2.98 6.84 -2.90 -0.02 2.96 16 34 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.07 1.28 7.57 -2.39 -0.02 1.26 16 38 H 0.09 1.95 6.10 -2.38 -0.01 1.93 16 Total: -1.00 -76.08 311.93 -0.05 -76.13 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.48 Total: 32.81 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 5.42 Total: 2.68 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -7.82 Total: -119.44 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.04 Total: -32.81 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -76.08 -0.05 -76.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799190112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.341 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds