Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48497 * 109.47534 * 270.00229 * 3 2 1 5 5 H 1.48497 * 109.47096 * 30.00195 * 3 2 1 6 6 H 1.48505 * 109.47020 * 149.99782 * 3 2 1 7 7 C 1.38950 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99876 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00155 * 179.97438 * 9 7 2 11 11 O 1.21303 * 119.99749 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00280 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00322 * 69.15558 * 13 12 10 15 15 C 1.54910 * 104.79710 * 146.36077 * 14 13 12 16 16 C 1.55142 * 101.65371 * 322.93400 * 15 14 13 17 17 H 1.09007 * 110.85239 * 277.19825 * 16 15 14 18 18 C 1.50697 * 110.70611 * 154.03611 * 16 15 14 19 19 C 1.38228 * 119.61616 * 283.12439 * 18 16 15 20 20 C 1.38631 * 119.16034 * 179.97438 * 19 18 16 21 21 C 1.38672 * 118.42092 * 0.02562 * 20 19 18 22 22 C 1.38184 * 119.16319 * 359.93581 * 21 20 19 23 23 N 1.31853 * 119.61910 * 103.09840 * 18 16 15 24 24 C 1.47449 * 110.99876 * 189.99996 * 13 12 10 25 25 H 0.96997 * 120.00704 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00328 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.46892 * 60.00389 * 12 10 9 28 28 H 1.08994 * 109.46693 * 300.00192 * 12 10 9 29 29 H 1.08997 * 110.37987 * 265.19820 * 14 13 12 30 30 H 1.09007 * 110.37094 * 27.42154 * 14 13 12 31 31 H 1.08998 * 110.98648 * 204.84180 * 15 14 13 32 32 H 1.08997 * 110.98824 * 81.02760 * 15 14 13 33 33 H 1.08001 * 120.42096 * 359.72762 * 19 18 16 34 34 H 1.07998 * 120.79350 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.41590 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.61823 * 180.02562 * 22 21 20 37 37 H 1.08996 * 109.88640 * 117.33831 * 24 13 12 38 38 H 1.08992 * 110.02339 * 356.22245 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0504 -3.7554 -0.0017 14 6 5.7640 -4.4181 -1.2919 15 6 6.9564 -5.3815 -1.5150 16 6 8.1400 -4.5508 -0.9529 17 1 8.5087 -3.8467 -1.6990 18 6 9.2497 -5.4552 -0.4823 19 6 9.1249 -6.1190 0.7237 20 6 10.1512 -6.9491 1.1472 21 6 11.2700 -7.0807 0.3385 22 6 11.3238 -6.3860 -0.8548 23 7 10.3282 -5.6046 -1.2259 24 6 7.5047 -3.8018 0.2373 25 1 -0.4851 0.8400 0.0004 26 1 3.8649 -0.3632 -0.0014 27 1 5.9241 -1.8567 0.8889 28 1 5.9240 -1.8566 -0.8910 29 1 4.8303 -4.9773 -1.2323 30 1 5.7139 -3.6816 -2.0939 31 1 7.0955 -5.5914 -2.5755 32 1 6.8238 -6.3042 -0.9501 33 1 8.2407 -5.9895 1.3303 34 1 10.0812 -7.4807 2.0847 35 1 12.0888 -7.7185 0.6374 36 1 12.1914 -6.4834 -1.4904 37 1 7.7112 -4.3362 1.1646 38 1 7.9058 -2.7900 0.2954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799190113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = 15.856846 kcal Electronic energy + Delta-G solvation = -20463.428023 eV Core-core repulsion = 17306.101515 eV Total energy + Delta-G solvation = -3157.326508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66562 -39.06454 -37.61921 -34.01347 -33.20774 -32.60005 -31.64165 -30.58189 -28.46510 -26.89707 -24.32944 -23.70938 -23.11751 -21.05572 -20.43636 -19.33036 -18.30154 -17.30148 -16.69597 -15.92985 -15.65336 -15.46414 -14.84016 -14.60249 -14.48264 -14.20565 -13.64578 -13.42488 -13.25866 -12.90723 -12.72989 -12.48432 -12.18407 -11.94509 -11.71866 -11.49592 -11.37983 -11.13349 -10.98410 -10.69181 -10.57217 -10.08399 -9.95045 -9.63209 -9.52824 -9.12749 -8.53612 -8.15096 -7.95273 -6.28301 -3.79459 0.87440 1.06086 3.04665 3.08542 3.16771 3.54340 3.78180 3.89155 4.08189 4.12938 4.47626 4.59782 4.66629 4.79576 4.87215 4.89140 4.92519 5.09767 5.23937 5.38232 5.41922 5.45814 5.53163 5.63737 5.69609 5.75754 5.84807 5.90452 5.94609 5.98212 6.03952 6.24470 6.42646 6.49250 7.16691 7.18766 7.61790 7.79156 8.17645 8.63771 8.98619 9.45853 9.87595 10.85002 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045741 B = 0.003212 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.996912 B = 8716.074082 C = 8884.040836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.594 5.594 10 C 0.454 3.546 11 O -0.558 6.558 12 C 0.037 3.963 13 N -0.503 5.503 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.064 4.064 17 H 0.094 0.906 18 C 0.148 3.852 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.183 4.183 22 C 0.098 3.902 23 N -0.485 5.485 24 C 0.045 3.955 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.083 0.917 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.944 -9.034 -0.050 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.440 6.440 12 C -0.095 4.095 13 N -0.227 5.227 14 C -0.075 4.075 15 C -0.154 4.154 16 C -0.084 4.084 17 H 0.112 0.888 18 C 0.010 3.990 19 C -0.187 4.187 20 C -0.100 4.100 21 C -0.203 4.203 22 C -0.059 4.059 23 N -0.194 5.194 24 C -0.083 4.083 25 H 0.083 0.917 26 H 0.202 0.798 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.101 0.899 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.110 -9.430 -0.434 24.041 hybrid contribution 1.052 1.441 0.239 1.800 sum 23.162 -7.989 -0.195 24.502 Atomic orbital electron populations 1.69617 1.05628 1.27432 1.49664 1.25028 0.95481 0.97936 0.97771 0.86678 0.79806 0.84111 0.78831 1.19697 1.20222 1.19489 1.19423 0.79242 0.96590 1.47895 0.86295 1.42213 1.07509 1.06131 1.67502 1.19644 0.88038 0.84543 0.83818 1.90550 1.69383 1.30839 1.53178 1.22167 0.95744 0.90023 1.01594 1.63290 1.11187 1.15055 1.33174 1.23079 0.99003 0.96339 0.89115 1.22806 0.92836 0.98656 1.01148 1.21348 0.92261 0.96207 0.98625 0.88783 1.21042 0.92593 0.94735 0.90619 1.22116 1.00579 0.98088 0.97878 1.21621 0.92911 0.96086 0.99339 1.22125 0.99524 1.02053 0.96583 1.22728 0.96535 0.92127 0.94475 1.67492 1.00883 1.17280 1.33769 1.23087 0.87746 0.99765 0.97732 0.91666 0.79774 0.89261 0.93134 0.88398 0.93694 0.90574 0.90515 0.83893 0.84801 0.84979 0.82913 0.89862 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.49 27.74 -169.99 -4.71 14.77 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.08 16 7 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -14.23 5.09 -10.96 -0.06 -14.28 16 10 C 0.45 10.36 7.58 -10.99 -0.08 10.27 16 11 O -0.56 -14.91 14.61 5.54 0.08 -14.83 16 12 C 0.04 0.62 5.06 -4.98 -0.03 0.59 16 13 N -0.50 -8.02 4.86 -232.70 -1.13 -9.15 16 14 C 0.05 0.80 5.75 -2.30 -0.01 0.79 16 15 C -0.12 -1.42 6.50 -24.59 -0.16 -1.58 16 16 C -0.06 -0.75 3.31 -89.95 -0.30 -1.05 16 17 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.15 1.70 5.86 -82.59 -0.48 1.21 16 19 C -0.17 -1.68 8.85 -39.44 -0.35 -2.02 16 20 C -0.07 -0.61 10.18 -39.28 -0.40 -1.01 16 21 C -0.18 -1.42 10.11 -39.44 -0.40 -1.82 16 22 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 23 N -0.49 -5.73 10.27 -9.48 -0.10 -5.83 16 24 C 0.05 0.56 6.32 -2.83 -0.02 0.54 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 27 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 28 H 0.05 0.76 7.85 -51.93 -0.41 0.35 16 29 H 0.10 1.76 7.38 -51.93 -0.38 1.38 16 30 H 0.04 0.69 7.62 -51.92 -0.40 0.29 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.94 7.95 -51.93 -0.41 0.52 16 33 H 0.14 1.36 6.41 -52.49 -0.34 1.02 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.08 0.96 5.55 -51.93 -0.29 0.67 16 38 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -33.41 313.88 -8.02 -41.43 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.94 Total: 9.46 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.67 Total: -1.11 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.51 Total: -54.45 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.41 -8.02 -41.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799190113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.288 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds