Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86797 * 119.99902 * 2 1 4 4 H 1.48497 * 109.47534 * 270.00229 * 3 2 1 5 5 H 1.48497 * 109.47096 * 30.00195 * 3 2 1 6 6 H 1.48505 * 109.47020 * 149.99782 * 3 2 1 7 7 C 1.38950 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 0.02562 * 7 2 1 9 9 N 1.37100 * 119.99876 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00155 * 179.97438 * 9 7 2 11 11 O 1.21303 * 119.99749 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00280 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47095 * 180.02562 * 12 10 9 14 14 C 1.47845 * 111.00322 * 69.15558 * 13 12 10 15 15 C 1.54910 * 104.79710 * 146.36077 * 14 13 12 16 16 C 1.55142 * 101.65371 * 322.93400 * 15 14 13 17 17 H 1.09007 * 110.85239 * 277.19825 * 16 15 14 18 18 C 1.50697 * 110.70611 * 154.03611 * 16 15 14 19 19 C 1.38228 * 119.61616 * 283.12439 * 18 16 15 20 20 C 1.38631 * 119.16034 * 179.97438 * 19 18 16 21 21 C 1.38672 * 118.42092 * 0.02562 * 20 19 18 22 22 C 1.38184 * 119.16319 * 359.93581 * 21 20 19 23 23 N 1.31853 * 119.61910 * 103.09840 * 18 16 15 24 24 C 1.47449 * 110.99876 * 189.99996 * 13 12 10 25 25 H 0.96997 * 120.00704 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00328 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.46892 * 60.00389 * 12 10 9 28 28 H 1.08994 * 109.46693 * 300.00192 * 12 10 9 29 29 H 1.08997 * 110.37987 * 265.19820 * 14 13 12 30 30 H 1.09007 * 110.37094 * 27.42154 * 14 13 12 31 31 H 1.08998 * 110.98648 * 204.84180 * 15 14 13 32 32 H 1.08997 * 110.98824 * 81.02760 * 15 14 13 33 33 H 1.08001 * 120.42096 * 359.72762 * 19 18 16 34 34 H 1.07998 * 120.79350 * 180.02562 * 20 19 18 35 35 H 1.08001 * 120.41590 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.61823 * 180.02562 * 22 21 20 37 37 H 1.08996 * 109.88640 * 117.33831 * 24 13 12 38 38 H 1.08992 * 110.02339 * 356.22245 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0014 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4210 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0504 -3.7554 -0.0017 14 6 5.7640 -4.4181 -1.2919 15 6 6.9564 -5.3815 -1.5150 16 6 8.1400 -4.5508 -0.9529 17 1 8.5087 -3.8467 -1.6990 18 6 9.2497 -5.4552 -0.4823 19 6 9.1249 -6.1190 0.7237 20 6 10.1512 -6.9491 1.1472 21 6 11.2700 -7.0807 0.3385 22 6 11.3238 -6.3860 -0.8548 23 7 10.3282 -5.6046 -1.2259 24 6 7.5047 -3.8018 0.2373 25 1 -0.4851 0.8400 0.0004 26 1 3.8649 -0.3632 -0.0014 27 1 5.9241 -1.8567 0.8889 28 1 5.9240 -1.8566 -0.8910 29 1 4.8303 -4.9773 -1.2323 30 1 5.7139 -3.6816 -2.0939 31 1 7.0955 -5.5914 -2.5755 32 1 6.8238 -6.3042 -0.9501 33 1 8.2407 -5.9895 1.3303 34 1 10.0812 -7.4807 2.0847 35 1 12.0888 -7.7185 0.6374 36 1 12.1914 -6.4834 -1.4904 37 1 7.7112 -4.3362 1.1646 38 1 7.9058 -2.7900 0.2954 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799190113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -9.407054 kcal Electronic energy + Delta-G solvation = -20464.523548 eV Core-core repulsion = 17306.101515 eV Total energy + Delta-G solvation = -3158.422032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.47257 -40.48414 -39.08120 -35.98460 -34.26966 -33.71380 -33.31503 -31.60570 -29.47767 -28.36755 -25.98900 -24.53576 -23.95899 -22.27326 -21.34207 -21.22667 -20.21359 -18.15009 -17.68981 -17.38821 -16.85834 -16.53900 -16.28485 -16.04617 -15.59442 -15.14299 -14.98523 -14.65461 -14.50870 -14.38773 -14.12704 -13.85363 -13.45318 -13.08455 -12.99494 -12.78161 -12.46087 -12.40344 -12.34447 -12.04856 -11.96821 -11.75906 -11.48004 -10.77095 -10.39617 -10.33610 -10.22791 -9.82278 -9.21617 -8.40026 -6.00552 0.19098 0.40004 1.30827 1.36091 1.44985 1.98270 2.23913 2.63771 2.83903 3.16138 3.23275 3.25149 3.62949 3.77168 4.01061 4.02900 4.13594 4.20149 4.25932 4.30338 4.34274 4.40553 4.46628 4.52042 4.68921 4.76232 4.87212 4.91406 5.00659 5.13183 5.15895 5.33599 5.36054 5.54269 5.83014 5.91136 5.98756 6.08524 6.61734 6.90340 7.08784 7.41836 7.99599 8.77803 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.045741 B = 0.003212 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.996912 B = 8716.074082 C = 8884.040836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.326 4.326 8 H 0.055 0.945 9 N -0.594 5.594 10 C 0.452 3.548 11 O -0.606 6.606 12 C 0.048 3.952 13 N -0.526 5.526 14 C 0.052 3.948 15 C -0.104 4.104 16 C -0.054 4.054 17 H 0.093 0.907 18 C 0.129 3.871 19 C -0.178 4.178 20 C -0.076 4.076 21 C -0.175 4.175 22 C 0.086 3.914 23 N -0.513 5.513 24 C 0.049 3.951 25 H 0.279 0.721 26 H 0.389 0.611 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.092 0.908 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.079 -7.865 0.498 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.455 4.455 8 H 0.073 0.927 9 N -0.236 5.236 10 C 0.240 3.760 11 O -0.490 6.490 12 C -0.084 4.084 13 N -0.250 5.250 14 C -0.075 4.075 15 C -0.143 4.143 16 C -0.074 4.074 17 H 0.112 0.888 18 C -0.008 4.008 19 C -0.197 4.197 20 C -0.102 4.102 21 C -0.194 4.194 22 C -0.071 4.071 23 N -0.223 5.223 24 C -0.078 4.078 25 H 0.088 0.912 26 H 0.224 0.776 27 H 0.139 0.861 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.194 0.806 37 H 0.110 0.890 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.280 -8.274 0.117 27.552 hybrid contribution -0.242 0.879 0.082 0.916 sum 26.037 -7.395 0.199 27.068 Atomic orbital electron populations 1.69802 1.08139 1.29198 1.50564 1.26108 0.96465 1.02702 0.96183 0.85367 0.79529 0.76753 0.79891 1.18226 1.20050 1.15401 1.18993 0.81483 0.94882 1.50156 0.92712 1.42039 1.05801 1.07562 1.68205 1.20894 0.90771 0.83332 0.81043 1.90537 1.71284 1.32650 1.54482 1.22105 0.90482 0.91397 1.04380 1.63183 1.13848 1.14600 1.33397 1.22936 0.98692 0.96690 0.89195 1.22687 0.91930 0.97897 1.01794 1.21192 0.92007 0.96018 0.98161 0.88835 1.20951 0.92750 0.95687 0.91448 1.22198 1.01265 0.98640 0.97614 1.21988 0.92439 0.95465 1.00319 1.22491 1.00017 1.01328 0.95599 1.23222 0.96619 0.91748 0.95508 1.67444 1.01637 1.18589 1.34598 1.23111 0.85261 1.01120 0.98328 0.91190 0.77552 0.86147 0.90222 0.92228 0.93865 0.89682 0.90759 0.83930 0.82328 0.81837 0.80648 0.89027 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 13.96 21.66 0.30 -56.74 16 2 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 3 Si 0.96 39.16 27.74 68.60 1.90 41.06 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.33 -19.32 10.16 84.04 0.85 -18.46 16 8 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 9 N -0.59 -28.40 5.09 -306.97 -1.56 -29.96 16 10 C 0.45 20.77 7.58 87.66 0.66 21.44 16 11 O -0.61 -34.02 14.61 -3.10 -0.05 -34.06 16 12 C 0.05 1.51 5.06 85.56 0.43 1.94 16 13 N -0.53 -16.23 4.86 -890.11 -4.33 -20.56 16 14 C 0.05 1.64 5.75 86.77 0.50 2.14 16 15 C -0.10 -2.53 6.50 31.98 0.21 -2.32 16 16 C -0.05 -1.17 3.31 -10.36 -0.03 -1.21 16 17 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 18 C 0.13 2.74 5.86 42.55 0.25 2.99 16 19 C -0.18 -3.23 8.85 22.36 0.20 -3.03 16 20 C -0.08 -1.05 10.18 22.47 0.23 -0.82 16 21 C -0.17 -2.14 10.11 22.36 0.23 -1.91 16 22 C 0.09 1.35 11.18 84.67 0.95 2.30 16 23 N -0.51 -11.20 10.27 -183.89 -1.89 -13.09 16 24 C 0.05 1.11 6.32 86.65 0.55 1.65 16 25 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 26 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 27 H 0.12 3.10 8.03 -2.39 -0.02 3.09 16 28 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 29 H 0.06 2.30 7.38 -2.39 -0.02 2.28 16 30 H 0.04 1.33 7.62 -2.38 -0.02 1.32 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.82 7.95 -2.39 -0.02 1.80 16 33 H 0.14 2.51 6.41 -2.91 -0.02 2.49 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.09 1.92 5.55 -2.39 -0.01 1.91 16 38 H 0.08 1.45 7.56 -2.39 -0.02 1.43 16 Total: -1.00 -78.67 313.88 0.35 -78.32 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.48 Total: 30.77 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.49 Total: 4.27 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -7.48 Total: -120.35 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.05 Total: -34.06 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -78.67 0.35 -78.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799190113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.913 kcal (2) G-P(sol) polarization free energy of solvation -78.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds