Wall clock time and date at job start Mon Mar 30 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47021 * 173.45671 * 3 2 1 5 5 N 1.46900 * 109.47042 * 182.21517 * 4 3 2 6 6 C 1.46901 * 110.99907 * 164.13756 * 5 4 3 7 7 C 1.50706 * 109.47139 * 293.95331 * 6 5 4 8 8 C 1.38231 * 119.61396 * 94.97867 * 7 6 5 9 9 C 1.38624 * 119.15641 * 179.78986 * 8 7 6 10 10 C 1.38674 * 118.42049 * 0.47246 * 9 8 7 11 11 C 1.38187 * 119.16491 * 359.50522 * 10 9 8 12 12 N 1.31850 * 119.61843 * 275.00003 * 7 6 5 13 13 C 1.46900 * 110.99786 * 288.09251 * 5 4 3 14 14 C 1.53004 * 109.46625 * 160.23635 * 13 5 4 15 15 H 1.08993 * 109.47594 * 54.86250 * 14 13 5 16 16 O 1.42901 * 109.47082 * 294.85921 * 14 13 5 17 17 C 1.50701 * 109.46804 * 174.86183 * 14 13 5 18 18 H 1.08004 * 119.99820 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00066 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99729 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 119.99804 * 359.97438 * 19 17 14 22 22 H 1.48509 * 109.47319 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.47228 * 209.99999 * 21 19 17 24 24 H 1.48500 * 109.47401 * 330.00179 * 21 19 17 25 25 H 1.08994 * 109.47222 * 53.45569 * 3 2 1 26 26 H 1.09000 * 109.47220 * 293.45293 * 3 2 1 27 27 H 1.08995 * 109.47215 * 62.21438 * 4 3 2 28 28 H 1.09001 * 109.46689 * 302.21316 * 4 3 2 29 29 H 1.08994 * 109.47380 * 173.95378 * 6 5 4 30 30 H 1.09001 * 109.47204 * 53.95146 * 6 5 4 31 31 H 1.07997 * 120.42469 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.79308 * 180.23044 * 9 8 7 33 33 H 1.08000 * 120.41978 * 179.78139 * 10 9 8 34 34 H 1.07993 * 119.61698 * 180.25199 * 11 10 9 35 35 H 1.09000 * 109.46918 * 280.23131 * 13 5 4 36 36 H 1.08998 * 109.47393 * 40.23270 * 13 5 4 37 37 H 0.96707 * 113.99883 * 295.20598 * 16 14 13 38 38 H 0.97001 * 119.99442 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4340 -0.1644 5 7 4.5854 1.4289 -0.2176 6 6 5.0976 2.7017 -0.7428 7 6 4.6870 2.8515 -2.1851 8 6 3.5418 3.5590 -2.4994 9 6 3.1754 3.6947 -3.8294 10 6 3.9727 3.1027 -4.7973 11 6 5.1036 2.4109 -4.4074 12 7 5.4241 2.3060 -3.1325 13 6 5.1590 1.1351 1.1025 14 6 6.6024 0.6557 0.9360 15 1 7.1679 1.3952 0.3692 16 8 6.6128 -0.5904 0.2366 17 6 7.2313 0.4751 2.2936 18 1 6.6589 0.6820 3.1858 19 6 8.5375 0.0457 2.3966 20 7 9.0865 -0.1115 3.5813 21 14 9.5272 -0.3128 0.8535 22 1 10.2287 0.9214 0.4174 23 1 10.5254 -1.3740 1.1410 24 1 8.6146 -0.7707 -0.2248 25 1 2.9716 -0.6111 -0.8256 26 1 2.9716 -0.4082 0.9428 27 1 2.7866 2.0364 0.6816 28 1 2.7218 1.8564 -1.0881 29 1 6.1851 2.7128 -0.6716 30 1 4.6869 3.5266 -0.1606 31 1 2.9417 4.0029 -1.7188 32 1 2.2879 4.2450 -4.1050 33 1 3.7155 3.1851 -5.8430 34 1 5.7320 1.9505 -5.1554 35 1 5.1440 2.0373 1.7140 36 1 4.5713 0.3567 1.5890 37 1 6.1905 -1.3151 0.7180 38 1 10.0053 -0.4139 3.6538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809577610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:56 Heat of formation + Delta-G solvation = 24.364644 kcal Electronic energy + Delta-G solvation = -20954.225727 eV Core-core repulsion = 17797.268145 eV Total energy + Delta-G solvation = -3156.957582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29841 -38.10611 -36.58289 -35.34007 -32.68795 -32.20658 -32.14871 -31.03807 -28.55664 -26.31117 -24.92910 -23.54334 -22.51016 -21.32591 -20.06042 -17.65566 -17.32354 -16.82767 -16.30965 -15.66107 -15.63474 -14.90328 -14.68492 -14.59667 -14.39450 -13.84196 -13.42363 -13.31350 -13.27185 -13.13566 -12.79035 -12.56955 -12.44209 -12.09650 -11.66789 -11.51977 -11.38567 -11.21222 -10.88492 -10.64764 -10.30707 -9.92379 -9.86948 -9.32819 -9.10452 -8.94005 -8.60739 -8.29534 -7.87829 -6.12148 -4.24082 1.04575 1.25722 2.69598 2.76610 3.43766 3.53813 3.63522 3.82799 3.92985 4.28024 4.50608 4.57142 4.72340 4.78355 4.94238 4.97556 5.06303 5.09586 5.23668 5.42601 5.45388 5.49880 5.64634 5.75300 5.81763 5.88559 5.90663 6.00975 6.08342 6.15894 6.28497 6.57475 6.65721 7.14612 7.24073 7.48493 7.52890 7.65766 8.09571 8.28959 8.84846 9.15870 9.53070 10.98177 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.005853 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.409724 B = 4782.550068 C = 6141.754391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.216 3.784 3 C -0.026 4.026 4 C 0.053 3.947 5 N -0.518 5.518 6 C 0.102 3.898 7 C 0.148 3.852 8 C -0.174 4.174 9 C -0.078 4.078 10 C -0.182 4.182 11 C 0.102 3.898 12 N -0.457 5.457 13 C 0.037 3.963 14 C 0.205 3.795 15 H 0.054 0.946 16 O -0.568 6.568 17 C -0.569 4.569 18 H 0.071 0.929 19 C 0.085 3.915 20 N -0.894 5.894 21 Si 0.868 3.132 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.211 1.211 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.352 0.648 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 6.242 -13.391 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.102 4.102 3 C -0.066 4.066 4 C -0.077 4.077 5 N -0.242 5.242 6 C -0.026 4.026 7 C 0.009 3.991 8 C -0.194 4.194 9 C -0.104 4.104 10 C -0.202 4.202 11 C -0.056 4.056 12 N -0.166 5.166 13 C -0.090 4.090 14 C 0.147 3.853 15 H 0.072 0.928 16 O -0.372 6.372 17 C -0.606 4.606 18 H 0.089 0.911 19 C -0.120 4.120 20 N -0.531 5.531 21 Si 0.694 3.306 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.133 1.133 25 H 0.137 0.863 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.198 0.802 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.164 5.718 -13.819 18.663 hybrid contribution -0.251 0.724 0.183 0.788 sum -11.414 6.443 -13.636 18.914 Atomic orbital electron populations 1.81195 1.13142 1.08796 1.09677 1.29331 0.95370 0.92922 0.92585 1.19323 0.80436 1.00139 1.06724 1.22050 0.89892 0.94296 1.01455 1.61901 1.03854 1.30996 1.27414 1.21007 1.02656 0.90729 0.88252 1.21222 0.90487 0.91699 0.95667 1.22014 0.98401 1.01787 0.97226 1.21514 0.98893 0.97140 0.92862 1.22124 0.97112 1.00475 1.00538 1.22829 0.94590 0.95140 0.93026 1.67590 1.31389 1.16943 1.00659 1.23003 0.99467 1.00112 0.86410 1.19665 0.89481 0.83960 0.92195 0.92832 1.86705 1.81413 1.20053 1.49070 1.21530 0.98449 1.48403 0.92264 0.91113 1.24978 0.97542 0.93098 0.96356 1.69962 1.14214 1.45244 1.23647 0.87079 0.79569 0.77948 0.86014 1.21485 1.22479 1.13341 0.86325 0.86878 0.94121 0.90565 0.87963 0.93299 0.85198 0.85226 0.85164 0.82905 0.94201 0.90770 0.80234 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.58 18.54 42.15 0.78 -5.80 16 2 C 0.22 2.61 15.43 -20.76 -0.32 2.29 16 3 C -0.03 -0.27 5.73 -29.52 -0.17 -0.44 16 4 C 0.05 0.61 4.76 -3.82 -0.02 0.59 16 5 N -0.52 -7.46 4.33 -236.07 -1.02 -8.48 16 6 C 0.10 1.43 5.11 -4.97 -0.03 1.41 16 7 C 0.15 1.98 5.70 -82.58 -0.47 1.51 16 8 C -0.17 -1.86 8.03 -39.44 -0.32 -2.18 16 9 C -0.08 -0.73 10.18 -39.28 -0.40 -1.13 16 10 C -0.18 -1.72 10.11 -39.44 -0.40 -2.12 16 11 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 12 N -0.46 -6.77 10.27 -9.47 -0.10 -6.87 16 13 C 0.04 0.62 4.43 -3.82 -0.02 0.60 16 14 C 0.21 4.40 2.41 -27.88 -0.07 4.33 16 15 H 0.05 1.23 6.09 -51.93 -0.32 0.91 16 16 O -0.57 -12.08 10.10 -35.23 -0.36 -12.44 16 17 C -0.57 -14.83 9.30 -34.44 -0.32 -15.15 16 18 H 0.07 1.99 7.99 -52.48 -0.42 1.57 16 19 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 20 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 21 Si 0.87 21.35 26.99 -169.99 -4.59 16.77 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.21 -5.10 5.30 56.52 0.30 -4.81 16 25 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.11 1.11 6.60 -51.93 -0.34 0.77 16 27 H 0.04 0.44 8.05 -51.93 -0.42 0.03 16 28 H 0.08 0.85 5.55 -51.93 -0.29 0.56 16 29 H 0.10 1.67 6.57 -51.93 -0.34 1.33 16 30 H 0.05 0.59 8.02 -51.93 -0.42 0.18 16 31 H 0.13 1.15 8.00 -52.49 -0.42 0.73 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 35 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 36 H 0.07 1.15 6.27 -51.93 -0.33 0.83 16 37 H 0.35 6.58 9.02 45.56 0.41 6.99 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -32.80 322.33 -6.69 -39.49 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.22 Total: 5.33 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.82 Total: -7.05 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.43 Total: -46.95 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.36 Total: -12.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.59 Total: 16.77 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.80 -6.69 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.853 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds