Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47021 * 173.45671 * 3 2 1 5 5 N 1.46900 * 109.47042 * 182.21517 * 4 3 2 6 6 C 1.46901 * 110.99907 * 164.13756 * 5 4 3 7 7 C 1.50706 * 109.47139 * 293.95331 * 6 5 4 8 8 C 1.38231 * 119.61396 * 94.97867 * 7 6 5 9 9 C 1.38624 * 119.15641 * 179.78986 * 8 7 6 10 10 C 1.38674 * 118.42049 * 0.47246 * 9 8 7 11 11 C 1.38187 * 119.16491 * 359.50522 * 10 9 8 12 12 N 1.31850 * 119.61843 * 275.00003 * 7 6 5 13 13 C 1.46900 * 110.99786 * 288.09251 * 5 4 3 14 14 C 1.53004 * 109.46625 * 160.23635 * 13 5 4 15 15 H 1.08993 * 109.47594 * 54.86250 * 14 13 5 16 16 O 1.42901 * 109.47082 * 294.85921 * 14 13 5 17 17 C 1.50701 * 109.46804 * 174.86183 * 14 13 5 18 18 H 1.08004 * 119.99820 * 359.97438 * 17 14 13 19 19 C 1.37880 * 120.00066 * 179.97438 * 17 14 13 20 20 N 1.31518 * 119.99729 * 179.97438 * 19 17 14 21 21 Si 1.86793 * 119.99804 * 359.97438 * 19 17 14 22 22 H 1.48509 * 109.47319 * 90.00098 * 21 19 17 23 23 H 1.48501 * 109.47228 * 209.99999 * 21 19 17 24 24 H 1.48500 * 109.47401 * 330.00179 * 21 19 17 25 25 H 1.08994 * 109.47222 * 53.45569 * 3 2 1 26 26 H 1.09000 * 109.47220 * 293.45293 * 3 2 1 27 27 H 1.08995 * 109.47215 * 62.21438 * 4 3 2 28 28 H 1.09001 * 109.46689 * 302.21316 * 4 3 2 29 29 H 1.08994 * 109.47380 * 173.95378 * 6 5 4 30 30 H 1.09001 * 109.47204 * 53.95146 * 6 5 4 31 31 H 1.07997 * 120.42469 * 359.97438 * 8 7 6 32 32 H 1.07999 * 120.79308 * 180.23044 * 9 8 7 33 33 H 1.08000 * 120.41978 * 179.78139 * 10 9 8 34 34 H 1.07993 * 119.61698 * 180.25199 * 11 10 9 35 35 H 1.09000 * 109.46918 * 280.23131 * 13 5 4 36 36 H 1.08998 * 109.47393 * 40.23270 * 13 5 4 37 37 H 0.96707 * 113.99883 * 295.20598 * 16 14 13 38 38 H 0.97001 * 119.99442 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4340 -0.1644 5 7 4.5854 1.4289 -0.2176 6 6 5.0976 2.7017 -0.7428 7 6 4.6870 2.8515 -2.1851 8 6 3.5418 3.5590 -2.4994 9 6 3.1754 3.6947 -3.8294 10 6 3.9727 3.1027 -4.7973 11 6 5.1036 2.4109 -4.4074 12 7 5.4241 2.3060 -3.1325 13 6 5.1590 1.1351 1.1025 14 6 6.6024 0.6557 0.9360 15 1 7.1679 1.3952 0.3692 16 8 6.6128 -0.5904 0.2366 17 6 7.2313 0.4751 2.2936 18 1 6.6589 0.6820 3.1858 19 6 8.5375 0.0457 2.3966 20 7 9.0865 -0.1115 3.5813 21 14 9.5272 -0.3128 0.8535 22 1 10.2287 0.9214 0.4174 23 1 10.5254 -1.3740 1.1410 24 1 8.6146 -0.7707 -0.2248 25 1 2.9716 -0.6111 -0.8256 26 1 2.9716 -0.4082 0.9428 27 1 2.7866 2.0364 0.6816 28 1 2.7218 1.8564 -1.0881 29 1 6.1851 2.7128 -0.6716 30 1 4.6869 3.5266 -0.1606 31 1 2.9417 4.0029 -1.7188 32 1 2.2879 4.2450 -4.1050 33 1 3.7155 3.1851 -5.8430 34 1 5.7320 1.9505 -5.1554 35 1 5.1440 2.0373 1.7140 36 1 4.5713 0.3567 1.5890 37 1 6.1905 -1.3151 0.7180 38 1 10.0053 -0.4139 3.6538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809577610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = -0.191752 kcal Electronic energy + Delta-G solvation = -20955.290572 eV Core-core repulsion = 17797.268145 eV Total energy + Delta-G solvation = -3158.022427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16172 -39.27450 -37.75405 -36.82405 -34.30161 -33.52546 -33.01527 -32.14591 -30.07338 -27.55313 -26.32102 -24.38887 -23.50670 -22.68378 -21.38247 -19.24414 -18.59698 -17.63336 -17.23159 -16.87842 -16.73719 -16.51453 -15.87553 -15.74887 -15.65444 -15.24248 -14.81292 -14.58341 -14.27943 -14.17255 -14.03670 -13.68978 -13.43836 -13.40993 -13.02438 -12.91790 -12.69680 -12.46784 -12.31623 -12.19795 -11.70580 -11.58690 -10.93782 -10.73128 -10.69647 -10.19496 -10.00216 -9.86068 -9.08196 -8.28462 -6.40958 0.23450 0.48428 1.45138 1.51872 1.73299 1.81340 1.83804 2.50621 2.67755 3.03446 3.11623 3.36823 3.54396 3.90860 4.02248 4.09673 4.17881 4.23769 4.29027 4.33532 4.41325 4.55912 4.58325 4.67353 4.77065 4.86206 4.91336 4.99409 5.09091 5.17959 5.28967 5.34728 5.55195 5.60903 5.88233 6.11690 6.19085 6.24345 6.58839 6.73387 7.25430 7.34946 7.55323 8.85422 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.005853 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.409724 B = 4782.550068 C = 6141.754391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.242 3.758 3 C -0.018 4.018 4 C 0.056 3.944 5 N -0.523 5.523 6 C 0.102 3.898 7 C 0.126 3.874 8 C -0.172 4.172 9 C -0.077 4.077 10 C -0.173 4.173 11 C 0.083 3.917 12 N -0.503 5.503 13 C 0.050 3.950 14 C 0.212 3.788 15 H 0.039 0.961 16 O -0.573 6.573 17 C -0.560 4.560 18 H 0.043 0.957 19 C 0.032 3.968 20 N -0.941 5.941 21 Si 0.929 3.071 22 H -0.293 1.293 23 H -0.302 1.302 24 H -0.202 1.202 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.149 0.851 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.366 0.634 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.623 6.742 -15.554 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.075 4.075 3 C -0.058 4.058 4 C -0.073 4.073 5 N -0.247 5.247 6 C -0.026 4.026 7 C -0.012 4.012 8 C -0.193 4.193 9 C -0.103 4.103 10 C -0.192 4.192 11 C -0.074 4.074 12 N -0.213 5.213 13 C -0.077 4.077 14 C 0.154 3.846 15 H 0.057 0.943 16 O -0.379 6.379 17 C -0.598 4.598 18 H 0.061 0.939 19 C -0.167 4.167 20 N -0.580 5.580 21 Si 0.754 3.246 22 H -0.220 1.220 23 H -0.229 1.229 24 H -0.124 1.124 25 H 0.144 0.856 26 H 0.141 0.859 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.053 0.947 36 H 0.108 0.892 37 H 0.213 0.787 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.992 6.218 -15.996 21.525 hybrid contribution 0.267 0.615 0.816 1.056 sum -12.726 6.833 -15.180 20.954 Atomic orbital electron populations 1.81231 1.14471 1.10253 1.11281 1.29453 0.95303 0.91552 0.91156 1.19346 0.79191 0.99722 1.07571 1.22057 0.87731 0.95108 1.02381 1.61740 1.05655 1.31774 1.25562 1.20954 1.00846 0.91087 0.89724 1.21106 0.91856 0.93429 0.94782 1.22187 0.97491 1.00951 0.98631 1.21942 0.99644 0.96585 0.92145 1.22468 0.95791 0.98708 1.02264 1.23171 0.95930 0.95977 0.92339 1.67478 1.32972 1.18663 1.02185 1.22646 0.96855 1.00294 0.87920 1.19440 0.92141 0.83951 0.89109 0.94349 1.86635 1.81925 1.20368 1.48955 1.21911 0.97974 1.46209 0.93678 0.93874 1.25732 0.98934 0.93592 0.98464 1.70081 1.14677 1.47691 1.25597 0.86150 0.78103 0.77193 0.83113 1.22020 1.22927 1.12357 0.85564 0.85857 0.93035 0.89755 0.91136 0.91578 0.83359 0.82056 0.82035 0.81618 0.94663 0.89227 0.78708 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.61 18.54 20.01 0.37 -13.24 16 2 C 0.24 5.29 15.43 89.44 1.38 6.67 16 3 C -0.02 -0.33 5.73 28.79 0.17 -0.16 16 4 C 0.06 1.14 4.76 86.30 0.41 1.55 16 5 N -0.52 -14.22 4.33 -900.78 -3.90 -18.12 16 6 C 0.10 2.79 5.11 85.56 0.44 3.23 16 7 C 0.13 3.22 5.70 42.56 0.24 3.46 16 8 C -0.17 -3.22 8.03 22.36 0.18 -3.04 16 9 C -0.08 -1.16 10.18 22.47 0.23 -0.93 16 10 C -0.17 -2.69 10.11 22.36 0.23 -2.46 16 11 C 0.08 1.78 11.18 84.67 0.95 2.73 16 12 N -0.50 -14.51 10.27 -183.88 -1.89 -16.40 16 13 C 0.05 1.63 4.43 86.30 0.38 2.01 16 14 C 0.21 8.99 2.41 29.85 0.07 9.06 16 15 H 0.04 1.78 6.09 -2.39 -0.01 1.76 16 16 O -0.57 -23.54 10.10 -148.98 -1.50 -25.05 16 17 C -0.56 -29.46 9.30 25.60 0.24 -29.22 16 18 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 19 C 0.03 1.82 5.47 84.65 0.46 2.28 16 20 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 21 Si 0.93 44.87 26.99 68.60 1.85 46.72 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 24 H -0.20 -9.36 5.30 99.48 0.53 -8.83 16 25 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.12 2.05 6.60 -2.39 -0.02 2.03 16 27 H 0.05 0.96 8.05 -2.39 -0.02 0.94 16 28 H 0.08 1.62 5.55 -2.39 -0.01 1.61 16 29 H 0.07 2.36 6.57 -2.39 -0.02 2.34 16 30 H 0.07 1.52 8.02 -2.39 -0.02 1.50 16 31 H 0.15 2.12 8.00 -2.91 -0.02 2.09 16 32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.04 1.17 8.00 -2.39 -0.02 1.15 16 36 H 0.09 2.59 6.27 -2.39 -0.01 2.58 16 37 H 0.37 12.98 9.02 -74.05 -0.67 12.31 16 38 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -71.98 322.33 0.83 -71.15 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.24 Total: 16.64 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.37 Total: -4.83 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.12 Total: -104.63 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -1.50 Total: -25.05 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.85 Total: 46.72 kcal Total: -71.98 0.83 -71.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809577610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.955 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds