Wall clock time and date at job start Mon Mar 30 2020 01:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99926 * 2 1 4 4 O 1.20823 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99788 * 179.97438 * 3 2 1 6 6 F 1.39897 * 110.64694 * 308.29975 * 5 3 2 7 7 C 1.54596 * 110.72522 * 71.45329 * 5 3 2 8 8 C 1.53996 * 105.14172 * 140.49062 * 7 5 3 9 9 N 1.47902 * 107.05584 * 1.22330 * 8 7 5 10 10 C 1.46904 * 111.00024 * 214.15586 * 9 8 7 11 11 C 1.52997 * 109.47298 * 175.79428 * 10 9 8 12 12 O 1.42905 * 109.47217 * 64.14175 * 11 10 9 13 13 C 1.42897 * 113.99906 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47280 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00398 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99902 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 120.00396 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46789 * 269.99838 * 18 16 14 20 20 H 1.48499 * 109.46501 * 29.99560 * 18 16 14 21 21 H 1.48491 * 109.47255 * 149.99657 * 18 16 14 22 22 C 1.48527 * 105.82001 * 334.67011 * 9 8 7 23 23 H 1.09003 * 109.46609 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47441 * 299.99909 * 1 2 3 25 25 H 1.09005 * 109.47210 * 60.00716 * 1 2 3 26 26 H 1.09000 * 110.31016 * 21.57721 * 7 5 3 27 27 H 1.09003 * 110.31056 * 259.40613 * 7 5 3 28 28 H 1.09000 * 109.91538 * 241.87414 * 8 7 5 29 29 H 1.08999 * 109.91883 * 120.57565 * 8 7 5 30 30 H 1.08999 * 109.46834 * 55.79234 * 10 9 8 31 31 H 1.09004 * 109.46936 * 295.79045 * 10 9 8 32 32 H 1.09006 * 109.46872 * 304.14617 * 11 10 9 33 33 H 1.08998 * 109.47355 * 184.14864 * 11 10 9 34 34 H 1.09005 * 109.46982 * 60.00423 * 13 12 11 35 35 H 1.09000 * 109.47341 * 300.00627 * 13 12 11 36 36 H 0.97007 * 120.00161 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.66743 * 157.64216 * 22 9 8 38 38 H 1.08995 * 110.66775 * 280.76601 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 9 4.1009 0.4906 1.0283 7 6 4.1372 0.8439 -1.3699 8 6 5.3033 1.8122 -1.6424 9 7 5.3995 2.7148 -0.4746 10 6 5.8232 4.0608 -0.8831 11 6 5.8101 4.9904 0.3320 12 8 6.7775 4.5434 1.2841 13 6 6.8463 5.3469 2.4638 14 6 7.8933 4.7878 3.3922 15 1 8.4509 3.9070 3.1094 16 6 8.1395 5.4004 4.6025 17 7 7.4610 6.4731 4.9467 18 14 9.4370 4.7067 5.7538 19 1 8.8110 3.7152 6.6649 20 1 10.5017 4.0447 4.9579 21 1 10.0294 5.8088 6.5533 22 6 4.0421 2.7439 0.1276 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 3.3762 0.9409 -2.1442 27 1 4.5011 -0.1825 -1.3224 28 1 5.1022 2.3913 -2.5437 29 1 6.2317 1.2527 -1.7567 30 1 5.1386 4.4430 -1.6404 31 1 6.8315 4.0150 -1.2947 32 1 4.8198 4.9789 0.7876 33 1 6.0529 6.0049 0.0161 34 1 5.8774 5.3425 2.9634 35 1 7.1103 6.3691 2.1924 36 1 7.6345 6.9043 5.7981 37 1 4.0921 3.0429 1.1746 38 1 3.3868 3.4105 -0.4329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815055862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:00 Heat of formation + Delta-G solvation = -165.789099 kcal Electronic energy + Delta-G solvation = -21857.548979 eV Core-core repulsion = 18229.283737 eV Total energy + Delta-G solvation = -3628.265243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.92195 -40.82810 -38.79084 -36.89685 -36.37297 -32.98739 -32.25118 -29.59323 -28.55008 -27.84355 -26.55455 -23.98013 -22.29563 -22.08602 -20.95385 -20.37609 -18.30127 -17.47554 -17.06885 -16.33135 -16.23448 -15.76329 -15.22879 -15.03088 -14.69632 -14.60294 -14.25408 -14.02387 -13.70380 -13.39215 -13.13642 -12.82230 -12.67730 -12.43420 -12.14906 -11.89029 -11.74581 -11.41343 -11.17267 -11.09881 -11.08132 -10.74111 -10.71019 -10.57550 -10.41565 -9.94013 -9.03088 -8.75393 -8.36166 -8.08973 -6.04275 -4.05103 1.65875 2.13607 3.36090 3.40589 3.46513 3.71481 3.97736 4.02011 4.20782 4.40974 4.48904 4.76192 4.82306 4.85383 4.91703 4.99108 5.18226 5.27443 5.32354 5.39732 5.44467 5.59290 5.64291 5.80640 5.85120 5.91605 5.93427 6.08717 6.26738 6.79924 6.98807 7.16431 7.24572 7.49260 7.87588 8.22973 8.66386 9.09253 9.59583 11.07430 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.004003 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.532599 B = 6993.035840 C = 7418.327517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.456 3.544 4 O -0.484 6.484 5 C 0.132 3.868 6 F -0.165 7.165 7 C -0.143 4.143 8 C 0.034 3.966 9 N -0.495 5.495 10 C 0.054 3.946 11 C 0.062 3.938 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.271 1.271 21 H -0.286 1.286 22 C 0.031 3.969 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.110 0.890 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.497 -11.632 -15.340 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.296 3.704 4 O -0.370 6.370 5 C 0.112 3.888 6 F -0.145 7.145 7 C -0.181 4.181 8 C -0.094 4.094 9 N -0.219 5.219 10 C -0.074 4.074 11 C -0.016 4.016 12 O -0.299 6.299 13 C 0.119 3.881 14 C -0.548 4.548 15 H 0.086 0.914 16 C -0.146 4.146 17 N -0.540 5.540 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.196 1.196 21 H -0.212 1.212 22 C -0.097 4.097 23 H 0.123 0.877 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.209 -11.555 -14.826 22.414 hybrid contribution -0.431 0.337 0.293 0.621 sum -12.640 -11.219 -14.533 22.290 Atomic orbital electron populations 1.23372 0.75796 1.04099 1.02847 1.86566 1.23833 1.32543 1.83372 1.23861 0.91521 0.82064 0.72967 1.90710 1.66299 1.36195 1.43784 1.21499 0.84771 0.93865 0.88676 1.93001 1.86417 1.75346 1.59743 1.23057 0.98841 1.02630 0.93587 1.22959 0.98573 0.94812 0.93041 1.64850 1.22436 1.10222 1.24411 1.22391 1.01399 0.87500 0.96116 1.22283 0.93485 0.95452 0.90413 1.87964 1.56817 1.54897 1.30175 1.20192 0.96565 0.90060 0.81250 1.21068 1.19730 1.12816 1.01207 0.91442 1.24945 0.96855 0.94971 0.97794 1.69970 1.41378 1.19932 1.22760 0.86343 0.81361 0.78450 0.80385 1.20473 1.19598 1.21187 1.23739 0.90521 0.91108 1.04380 0.87689 0.91475 0.91678 0.89526 0.87934 0.92941 0.88939 0.93776 0.89239 0.94536 0.93923 0.97908 0.97949 0.92763 0.87150 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.89 10.57 -39.27 -0.41 -4.31 16 3 C 0.46 5.91 6.91 36.00 0.25 6.16 16 4 O -0.48 -7.10 15.46 -18.75 -0.29 -7.39 16 5 C 0.13 1.76 1.63 -89.91 -0.15 1.62 16 6 F -0.16 -2.60 16.96 2.25 0.04 -2.57 16 7 C -0.14 -1.43 6.31 -25.37 -0.16 -1.59 16 8 C 0.03 0.37 6.70 -2.75 -0.02 0.36 16 9 N -0.49 -7.50 5.29 -230.45 -1.22 -8.72 16 10 C 0.05 0.79 5.23 -3.82 -0.02 0.77 16 11 C 0.06 1.16 5.88 37.16 0.22 1.38 16 12 O -0.38 -9.37 10.26 -35.23 -0.36 -9.73 16 13 C 0.19 5.45 5.69 36.00 0.20 5.66 16 14 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 15 H 0.07 2.04 7.81 -52.48 -0.41 1.63 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.91 22.40 29.54 -169.99 -5.02 17.38 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.03 0.45 4.27 -1.90 -0.01 0.45 16 23 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 27 H 0.10 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.53 7.97 -51.93 -0.41 0.11 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.04 0.67 6.68 -51.93 -0.35 0.33 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.11 1.92 7.56 -51.93 -0.39 1.52 16 38 H 0.08 1.03 7.25 -51.93 -0.38 0.66 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -34.47 325.07 -6.35 -40.83 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -5.68 Total: -5.47 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 0.96 Total: 1.88 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.48 Total: -35.51 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -1.07 Total: -21.43 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.47 -6.35 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815055862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.962 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds