Wall clock time and date at job start Mon Mar 30 2020 01:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99926 * 2 1 4 4 O 1.20823 * 120.00081 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99788 * 179.97438 * 3 2 1 6 6 F 1.39897 * 110.64694 * 308.29975 * 5 3 2 7 7 C 1.54596 * 110.72522 * 71.45329 * 5 3 2 8 8 C 1.53996 * 105.14172 * 140.49062 * 7 5 3 9 9 N 1.47902 * 107.05584 * 1.22330 * 8 7 5 10 10 C 1.46904 * 111.00024 * 214.15586 * 9 8 7 11 11 C 1.52997 * 109.47298 * 175.79428 * 10 9 8 12 12 O 1.42905 * 109.47217 * 64.14175 * 11 10 9 13 13 C 1.42897 * 113.99906 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.47280 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99868 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00398 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99902 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 120.00396 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46789 * 269.99838 * 18 16 14 20 20 H 1.48499 * 109.46501 * 29.99560 * 18 16 14 21 21 H 1.48491 * 109.47255 * 149.99657 * 18 16 14 22 22 C 1.48527 * 105.82001 * 334.67011 * 9 8 7 23 23 H 1.09003 * 109.46609 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47441 * 299.99909 * 1 2 3 25 25 H 1.09005 * 109.47210 * 60.00716 * 1 2 3 26 26 H 1.09000 * 110.31016 * 21.57721 * 7 5 3 27 27 H 1.09003 * 110.31056 * 259.40613 * 7 5 3 28 28 H 1.09000 * 109.91538 * 241.87414 * 8 7 5 29 29 H 1.08999 * 109.91883 * 120.57565 * 8 7 5 30 30 H 1.08999 * 109.46834 * 55.79234 * 10 9 8 31 31 H 1.09004 * 109.46936 * 295.79045 * 10 9 8 32 32 H 1.09006 * 109.46872 * 304.14617 * 11 10 9 33 33 H 1.08998 * 109.47355 * 184.14864 * 11 10 9 34 34 H 1.09005 * 109.46982 * 60.00423 * 13 12 11 35 35 H 1.09000 * 109.47341 * 300.00627 * 13 12 11 36 36 H 0.97007 * 120.00161 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.66743 * 157.64216 * 22 9 8 38 38 H 1.08995 * 110.66775 * 280.76601 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 9 4.1009 0.4906 1.0283 7 6 4.1372 0.8439 -1.3699 8 6 5.3033 1.8122 -1.6424 9 7 5.3995 2.7148 -0.4746 10 6 5.8232 4.0608 -0.8831 11 6 5.8101 4.9904 0.3320 12 8 6.7775 4.5434 1.2841 13 6 6.8463 5.3469 2.4638 14 6 7.8933 4.7878 3.3922 15 1 8.4509 3.9070 3.1094 16 6 8.1395 5.4004 4.6025 17 7 7.4610 6.4731 4.9467 18 14 9.4370 4.7067 5.7538 19 1 8.8110 3.7152 6.6649 20 1 10.5017 4.0447 4.9579 21 1 10.0294 5.8088 6.5533 22 6 4.0421 2.7439 0.1276 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8901 26 1 3.3762 0.9409 -2.1442 27 1 4.5011 -0.1825 -1.3224 28 1 5.1022 2.3913 -2.5437 29 1 6.2317 1.2527 -1.7567 30 1 5.1386 4.4430 -1.6404 31 1 6.8315 4.0150 -1.2947 32 1 4.8198 4.9789 0.7876 33 1 6.0529 6.0049 0.0161 34 1 5.8774 5.3425 2.9634 35 1 7.1103 6.3691 2.1924 36 1 7.6345 6.9043 5.7981 37 1 4.0921 3.0429 1.1746 38 1 3.3868 3.4105 -0.4329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815055862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:59 Heat of formation + Delta-G solvation = -190.750270 kcal Electronic energy + Delta-G solvation = -21858.631377 eV Core-core repulsion = 18229.283737 eV Total energy + Delta-G solvation = -3629.347640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.06366 -41.79926 -39.90471 -38.29327 -37.72064 -34.99805 -33.66808 -30.66605 -29.91188 -28.97187 -28.21316 -25.09113 -24.47269 -23.16024 -22.03184 -21.47148 -19.31704 -18.60947 -18.44416 -18.07046 -17.48631 -17.21596 -16.55419 -16.32994 -16.10211 -16.00068 -15.59250 -15.35514 -14.97134 -14.50348 -14.32550 -14.22485 -13.75983 -13.61051 -13.46190 -13.26663 -12.97377 -12.85031 -12.75552 -12.48067 -12.23511 -12.17294 -12.12929 -11.97437 -11.71873 -11.58495 -11.26154 -10.85941 -10.20054 -9.41268 -8.31557 -6.43595 0.66092 1.24688 1.39772 1.43255 1.55311 2.35681 2.73129 2.92744 3.02127 3.06548 3.21090 3.30243 3.59775 3.96455 4.07992 4.15370 4.20242 4.21240 4.26570 4.41732 4.52630 4.56610 4.61898 4.64915 4.66832 4.78188 4.82461 4.96886 5.00746 5.05116 5.17921 5.55749 5.73036 5.93384 5.98529 6.30173 6.56255 6.85173 7.28556 8.80939 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.004003 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.532599 B = 6993.035840 C = 7418.327517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.462 3.538 4 O -0.507 6.507 5 C 0.123 3.877 6 F -0.184 7.184 7 C -0.132 4.132 8 C 0.034 3.966 9 N -0.528 5.528 10 C 0.063 3.937 11 C 0.050 3.950 12 O -0.394 6.394 13 C 0.209 3.791 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.983 3.017 19 H -0.269 1.269 20 H -0.263 1.263 21 H -0.272 1.272 22 C 0.033 3.967 23 H 0.138 0.862 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.053 0.947 34 H -0.021 1.021 35 H -0.014 1.014 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.389 -13.032 -16.616 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.265 6.265 3 C 0.303 3.697 4 O -0.395 6.395 5 C 0.103 3.897 6 F -0.165 7.165 7 C -0.170 4.170 8 C -0.093 4.093 9 N -0.253 5.253 10 C -0.065 4.065 11 C -0.027 4.027 12 O -0.314 6.314 13 C 0.134 3.866 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.806 3.194 19 H -0.195 1.195 20 H -0.187 1.187 21 H -0.197 1.197 22 C -0.096 4.096 23 H 0.156 0.844 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.071 0.929 34 H -0.004 1.004 35 H 0.004 0.996 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.118 -12.973 -16.131 23.987 hybrid contribution -0.579 0.774 0.645 1.162 sum -12.697 -12.199 -15.487 23.449 Atomic orbital electron populations 1.23731 0.73699 1.06397 1.03052 1.86553 1.25847 1.31358 1.82760 1.23718 0.91301 0.82270 0.72432 1.90697 1.66730 1.37004 1.45116 1.21667 0.85380 0.92725 0.89954 1.92953 1.86793 1.75733 1.60998 1.23107 0.98994 1.03020 0.91840 1.23064 0.99332 0.94492 0.92390 1.64746 1.22637 1.10883 1.27044 1.22333 1.02761 0.86957 0.94425 1.22668 0.91900 0.97442 0.90712 1.87911 1.58761 1.54782 1.29932 1.19788 0.94845 0.89546 0.82413 1.21388 1.20912 1.13339 1.02726 0.92122 1.25973 0.99045 0.95004 0.99245 1.70075 1.42612 1.20909 1.23555 0.85181 0.78239 0.78121 0.77861 1.19471 1.18723 1.19719 1.23557 0.91073 0.92663 1.02257 0.84380 0.92056 0.90759 0.86843 0.86577 0.90203 0.88395 0.89986 0.88765 0.94928 0.92889 1.00370 0.99625 0.92075 0.91161 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -7.33 10.57 -51.46 -0.54 -7.87 16 3 C 0.46 11.63 6.91 71.24 0.49 12.13 16 4 O -0.51 -14.75 15.46 21.97 0.34 -14.41 16 5 C 0.12 3.21 1.63 -10.33 -0.02 3.19 16 6 F -0.18 -5.90 16.96 44.97 0.76 -5.14 16 7 C -0.13 -2.30 6.31 31.47 0.20 -2.10 16 8 C 0.03 0.66 6.70 86.45 0.58 1.24 16 9 N -0.53 -15.56 5.29 -883.02 -4.67 -20.23 16 10 C 0.06 1.77 5.23 86.30 0.45 2.22 16 11 C 0.05 1.91 5.88 71.98 0.42 2.33 16 12 O -0.39 -20.18 10.26 -148.98 -1.53 -21.71 16 13 C 0.21 12.32 5.69 71.23 0.41 12.73 16 14 C -0.55 -33.95 9.43 25.60 0.24 -33.71 16 15 H 0.06 3.76 7.81 -2.91 -0.02 3.73 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -57.76 13.29 21.44 0.28 -57.48 16 18 Si 0.98 45.93 29.54 68.60 2.03 47.95 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.03 0.99 4.27 86.65 0.37 1.36 16 23 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 25 H 0.07 0.88 8.13 -2.38 -0.02 0.86 16 26 H 0.11 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.12 1.74 8.12 -2.39 -0.02 1.72 16 28 H 0.08 1.13 7.67 -2.39 -0.02 1.11 16 29 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.71 7.97 -2.39 -0.02 1.69 16 31 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.03 1.26 6.68 -2.38 -0.02 1.24 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H -0.02 -1.33 8.14 -2.38 -0.02 -1.35 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 37 H 0.07 2.63 7.56 -2.39 -0.02 2.61 16 38 H 0.09 2.32 7.25 -2.39 -0.02 2.31 16 Total: -1.00 -76.53 325.07 2.52 -74.01 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.05 Total: 3.18 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 4.80 Total: 1.69 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -4.38 Total: -77.71 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.73 Total: -43.98 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.76 Total: -5.14 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -76.53 2.52 -74.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815055862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.744 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds