Wall clock time and date at job start Mon Mar 30 2020 01:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00231 * 2 1 4 4 O 1.20832 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00277 * 179.97438 * 3 2 1 6 6 F 1.39902 * 110.62873 * 56.89397 * 5 3 2 7 7 C 1.55136 * 110.70291 * 293.59647 * 5 3 2 8 8 C 1.54908 * 101.65233 * 205.96138 * 7 5 3 9 9 N 1.47849 * 104.79673 * 37.07196 * 8 7 5 10 10 C 1.46894 * 111.00357 * 213.63989 * 9 8 7 11 11 C 1.53009 * 109.46764 * 290.84160 * 10 9 8 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.47450 * 108.56529 * 335.90332 * 9 8 7 23 23 H 1.09004 * 109.46763 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.46862 * 60.00597 * 1 2 3 25 25 H 1.09003 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08998 * 110.99375 * 324.04943 * 7 5 3 27 27 H 1.08992 * 110.99154 * 87.87523 * 7 5 3 28 28 H 1.08995 * 110.37935 * 278.24620 * 8 7 5 29 29 H 1.09005 * 110.37627 * 155.89833 * 8 7 5 30 30 H 1.09000 * 109.47283 * 170.84109 * 10 9 8 31 31 H 1.09002 * 109.47562 * 50.83429 * 10 9 8 32 32 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 33 33 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 34 34 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 35 35 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.88571 * 120.39358 * 22 9 8 38 38 H 1.08994 * 109.88832 * 241.41949 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 9 4.0965 0.5862 -1.0958 7 6 4.1440 0.7237 1.3308 8 6 5.4928 1.4798 1.4233 9 7 5.2059 2.8300 0.8934 10 6 6.3707 3.3757 0.1842 11 6 7.4826 3.6820 1.1898 12 8 7.9374 2.4640 1.7827 13 6 8.9813 2.6394 2.7428 14 6 9.3808 1.2978 3.3011 15 1 8.8872 0.4010 2.9568 16 6 10.3771 1.2153 4.2506 17 7 10.9784 2.3073 4.6694 18 14 10.8728 -0.4477 4.9420 19 1 11.3547 -1.3185 3.8398 20 1 11.9574 -0.2655 5.9398 21 1 9.6999 -1.0812 5.5966 22 6 4.0357 2.7449 0.0003 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.4971 0.9750 2.1712 27 1 4.3033 -0.3529 1.2709 28 1 6.2479 0.9852 0.8125 29 1 5.8230 1.5415 2.4603 30 1 6.0852 4.2922 -0.3322 31 1 6.7288 2.6459 -0.5420 32 1 7.0978 4.3429 1.9666 33 1 8.3123 4.1686 0.6770 34 1 8.6273 3.2784 3.5518 35 1 9.8422 3.1045 2.2625 36 1 11.6791 2.2492 5.3376 37 1 3.2384 3.3888 0.3716 38 1 4.3166 3.0469 -1.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815055863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:03 Heat of formation + Delta-G solvation = -169.364653 kcal Electronic energy + Delta-G solvation = -21881.606221 eV Core-core repulsion = 18253.185931 eV Total energy + Delta-G solvation = -3628.420290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.14651 -40.82140 -38.67448 -36.94533 -36.34722 -32.96759 -32.20711 -29.30148 -28.89097 -27.68444 -26.63714 -23.49080 -22.59827 -22.00482 -20.84843 -20.42632 -18.50282 -17.43288 -16.96382 -16.40666 -16.13007 -15.69194 -15.44505 -15.07129 -14.95494 -14.53569 -14.04514 -13.87187 -13.53336 -13.39075 -13.23483 -12.85150 -12.60373 -12.43659 -11.93765 -11.77436 -11.62660 -11.33715 -11.27320 -11.17807 -11.07644 -10.79769 -10.73106 -10.53800 -10.42663 -9.97728 -9.11101 -8.81353 -8.25264 -8.15717 -6.11047 -4.12979 1.65830 2.14801 3.31500 3.34711 3.37943 3.77179 4.00362 4.06627 4.21064 4.34022 4.57810 4.75540 4.84188 4.90440 5.05296 5.17481 5.22045 5.25523 5.41416 5.50468 5.65705 5.69026 5.79077 5.91428 6.02308 6.09025 6.14493 6.35015 6.49394 7.00442 7.10836 7.13204 7.24140 7.44583 7.78170 8.15329 8.57482 8.99884 9.51950 11.00412 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.003870 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.828303 B = 7233.937852 C = 7934.525570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.461 3.539 4 O -0.486 6.486 5 C 0.108 3.892 6 F -0.178 7.178 7 C -0.144 4.144 8 C 0.057 3.943 9 N -0.518 5.518 10 C 0.052 3.948 11 C 0.066 3.934 12 O -0.395 6.395 13 C 0.197 3.803 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.033 3.967 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.005 0.995 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.111 0.889 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.146 -1.958 -9.700 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.301 3.699 4 O -0.372 6.372 5 C 0.088 3.912 6 F -0.158 7.158 7 C -0.183 4.183 8 C -0.070 4.070 9 N -0.242 5.242 10 C -0.076 4.076 11 C -0.012 4.012 12 O -0.315 6.315 13 C 0.122 3.878 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.096 4.096 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.383 -1.447 -9.238 20.624 hybrid contribution 0.468 -1.046 -0.325 1.191 sum -17.915 -2.493 -9.563 20.460 Atomic orbital electron populations 1.23370 0.75794 1.04119 1.02789 1.86569 1.23833 1.32578 1.83306 1.23742 0.91412 0.81985 0.72776 1.90686 1.66324 1.36169 1.44005 1.22073 0.85639 0.95926 0.87600 1.92955 1.86765 1.81169 1.54919 1.23479 0.98930 1.02401 0.93459 1.23154 0.93744 0.86013 1.04045 1.63824 1.04037 1.23873 1.32469 1.22451 0.90159 0.99640 0.95348 1.22233 0.94260 0.89405 0.95341 1.87843 1.56612 1.27922 1.59084 1.20161 0.84083 0.97675 0.85844 1.21003 1.19153 0.92914 1.22214 0.91657 1.24943 0.95921 0.97287 0.96312 1.69952 1.25216 1.27599 1.30972 0.86419 0.78151 0.83342 0.78687 1.20056 1.21202 1.20006 1.23487 0.96256 0.91251 0.98590 0.91507 0.91675 0.87701 0.88595 0.88181 0.91352 0.87364 0.90025 0.93664 0.93430 0.93993 0.97685 0.97929 0.92608 0.87076 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.86 10.57 -39.24 -0.41 -4.28 16 3 C 0.46 5.78 7.02 36.01 0.25 6.03 16 4 O -0.49 -6.74 15.17 -18.75 -0.28 -7.02 16 5 C 0.11 1.39 1.52 -89.95 -0.14 1.25 16 6 F -0.18 -2.47 16.96 2.25 0.04 -2.43 16 7 C -0.14 -1.82 6.32 -24.59 -0.16 -1.98 16 8 C 0.06 0.89 5.07 -2.29 -0.01 0.88 16 9 N -0.52 -7.75 5.16 -231.24 -1.19 -8.95 16 10 C 0.05 0.77 5.13 -3.82 -0.02 0.75 16 11 C 0.07 1.19 6.23 37.16 0.23 1.42 16 12 O -0.39 -8.97 7.67 -35.23 -0.27 -9.24 16 13 C 0.20 5.25 5.69 36.01 0.20 5.46 16 14 C -0.51 -14.75 9.43 -34.44 -0.32 -15.08 16 15 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.03 0.42 6.10 -2.83 -0.02 0.40 16 23 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 24 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.10 1.11 8.04 -51.93 -0.42 0.69 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.18 7.21 -51.93 -0.37 0.80 16 29 H 0.11 1.93 7.60 -51.93 -0.39 1.54 16 30 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 31 H 0.05 0.69 7.85 -51.93 -0.41 0.28 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.11 1.43 6.81 -51.93 -0.35 1.08 16 38 H 0.08 0.90 7.52 -51.93 -0.39 0.51 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -31.60 322.51 -6.24 -37.83 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.68 Total: -3.32 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 0.99 Total: 1.97 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: -0.46 Total: -34.88 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.97 Total: -20.55 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.60 -6.24 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815055863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.531 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds