Wall clock time and date at job start Mon Mar 30 2020 01:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 117.00231 * 2 1 4 4 O 1.20832 * 120.00000 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00277 * 179.97438 * 3 2 1 6 6 F 1.39902 * 110.62873 * 56.89397 * 5 3 2 7 7 C 1.55136 * 110.70291 * 293.59647 * 5 3 2 8 8 C 1.54908 * 101.65233 * 205.96138 * 7 5 3 9 9 N 1.47849 * 104.79673 * 37.07196 * 8 7 5 10 10 C 1.46894 * 111.00357 * 213.63989 * 9 8 7 11 11 C 1.53009 * 109.46764 * 290.84160 * 10 9 8 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.47450 * 108.56529 * 335.90332 * 9 8 7 23 23 H 1.09004 * 109.46763 * 300.00042 * 1 2 3 24 24 H 1.08994 * 109.46862 * 60.00597 * 1 2 3 25 25 H 1.09003 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08998 * 110.99375 * 324.04943 * 7 5 3 27 27 H 1.08992 * 110.99154 * 87.87523 * 7 5 3 28 28 H 1.08995 * 110.37935 * 278.24620 * 8 7 5 29 29 H 1.09005 * 110.37627 * 155.89833 * 8 7 5 30 30 H 1.09000 * 109.47283 * 170.84109 * 10 9 8 31 31 H 1.09002 * 109.47562 * 50.83429 * 10 9 8 32 32 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 33 33 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 34 34 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 35 35 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 36 36 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.88571 * 120.39358 * 22 9 8 38 38 H 1.08994 * 109.88832 * 241.41949 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 9 4.0965 0.5862 -1.0958 7 6 4.1440 0.7237 1.3308 8 6 5.4928 1.4798 1.4233 9 7 5.2059 2.8300 0.8934 10 6 6.3707 3.3757 0.1842 11 6 7.4826 3.6820 1.1898 12 8 7.9374 2.4640 1.7827 13 6 8.9813 2.6394 2.7428 14 6 9.3808 1.2978 3.3011 15 1 8.8872 0.4010 2.9568 16 6 10.3771 1.2153 4.2506 17 7 10.9784 2.3073 4.6694 18 14 10.8728 -0.4477 4.9420 19 1 11.3547 -1.3185 3.8398 20 1 11.9574 -0.2655 5.9398 21 1 9.6999 -1.0812 5.5966 22 6 4.0357 2.7449 0.0003 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.4971 0.9750 2.1712 27 1 4.3033 -0.3529 1.2709 28 1 6.2479 0.9852 0.8125 29 1 5.8230 1.5415 2.4603 30 1 6.0852 4.2922 -0.3322 31 1 6.7288 2.6459 -0.5420 32 1 7.0978 4.3429 1.9666 33 1 8.3123 4.1686 0.6770 34 1 8.6273 3.2784 3.5518 35 1 9.8422 3.1045 2.2625 36 1 11.6791 2.2492 5.3376 37 1 3.2384 3.3888 0.3716 38 1 4.3166 3.0469 -1.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815055863.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:02 Heat of formation + Delta-G solvation = -190.691269 kcal Electronic energy + Delta-G solvation = -21882.531013 eV Core-core repulsion = 18253.185931 eV Total energy + Delta-G solvation = -3629.345082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.20248 -41.75725 -39.88420 -38.25269 -37.67356 -34.96664 -33.59857 -30.36903 -30.28790 -28.93246 -28.16289 -24.60807 -24.44940 -23.46782 -22.04437 -21.46093 -19.47330 -18.58893 -18.36591 -17.90843 -17.44564 -17.21690 -16.67729 -16.43213 -16.28419 -15.88191 -15.37904 -15.31464 -14.82736 -14.61135 -14.31724 -14.04474 -13.97899 -13.43477 -13.26805 -13.09291 -13.00359 -12.87483 -12.70368 -12.53217 -12.43112 -12.24387 -12.07760 -11.94508 -11.73910 -11.52204 -11.21955 -10.82807 -10.16706 -9.44556 -8.29153 -6.41009 0.69641 1.28466 1.41931 1.46250 1.54471 2.36493 2.71968 2.89599 3.02877 3.05142 3.22577 3.26859 3.61391 3.93765 4.16781 4.21190 4.22353 4.29033 4.34125 4.41824 4.58700 4.65470 4.67532 4.72560 4.75648 4.84595 4.92013 5.00550 5.06073 5.16533 5.22981 5.57923 5.81913 5.91758 5.99874 6.33012 6.57058 6.85661 7.30883 8.83015 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.003870 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.828303 B = 7233.937852 C = 7934.525570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.353 6.353 3 C 0.467 3.533 4 O -0.502 6.502 5 C 0.108 3.892 6 F -0.184 7.184 7 C -0.135 4.135 8 C 0.060 3.940 9 N -0.528 5.528 10 C 0.060 3.940 11 C 0.057 3.943 12 O -0.399 6.399 13 C 0.212 3.788 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.932 5.932 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.264 1.264 22 C 0.036 3.964 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.135 0.865 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.051 0.949 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.270 0.730 37 H 0.115 0.885 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.364 -3.135 -10.161 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.307 3.693 4 O -0.389 6.389 5 C 0.088 3.912 6 F -0.165 7.165 7 C -0.173 4.173 8 C -0.068 4.068 9 N -0.253 5.253 10 C -0.068 4.068 11 C -0.020 4.020 12 O -0.319 6.319 13 C 0.137 3.863 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.572 5.572 18 Si 0.803 3.197 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.092 4.092 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.153 0.847 26 H 0.126 0.874 27 H 0.129 0.871 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.000 1.000 35 H 0.000 1.000 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.626 -2.625 -9.719 22.057 hybrid contribution 0.766 -0.624 -0.227 1.014 sum -18.860 -3.249 -9.946 21.568 Atomic orbital electron populations 1.23722 0.73645 1.06296 1.03154 1.86552 1.25917 1.31636 1.82768 1.23513 0.91061 0.82226 0.72459 1.90681 1.66566 1.36732 1.44961 1.22028 0.86273 0.95681 0.87232 1.92943 1.86954 1.81300 1.55256 1.23420 0.97252 1.02660 0.94014 1.22942 0.94991 0.86900 1.01932 1.63749 1.04649 1.23423 1.33450 1.22440 0.89073 1.01199 0.94110 1.22535 0.95718 0.87887 0.95896 1.87832 1.55355 1.30408 1.58303 1.19754 0.84264 0.96543 0.85773 1.21355 1.19997 0.93526 1.23194 0.91721 1.25945 0.95465 1.01631 0.96242 1.70070 1.25624 1.30088 1.31410 0.85271 0.78147 0.78084 0.78148 1.19066 1.20322 1.18860 1.23469 0.95300 0.91564 0.98878 0.91154 0.91347 0.84704 0.87406 0.87083 0.93351 0.90207 0.86585 0.93859 0.93752 0.93097 0.99954 1.00010 0.92169 0.86696 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.56 113.37 1.20 1.50 16 2 O -0.35 -7.14 10.57 -51.34 -0.54 -7.68 16 3 C 0.47 10.89 7.02 71.24 0.50 11.39 16 4 O -0.50 -13.08 15.17 21.95 0.33 -12.75 16 5 C 0.11 2.63 1.52 -10.36 -0.02 2.61 16 6 F -0.18 -4.86 16.96 44.97 0.76 -4.10 16 7 C -0.14 -3.29 6.32 31.98 0.20 -3.09 16 8 C 0.06 1.88 5.07 86.77 0.44 2.32 16 9 N -0.53 -15.42 5.16 -885.51 -4.57 -20.00 16 10 C 0.06 1.71 5.13 86.31 0.44 2.15 16 11 C 0.06 2.07 6.23 71.99 0.45 2.52 16 12 O -0.40 -18.67 7.67 -148.98 -1.14 -19.82 16 13 C 0.21 11.74 5.69 71.24 0.41 12.14 16 14 C -0.54 -31.75 9.43 25.60 0.24 -31.51 16 15 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.01 0.31 5.46 84.66 0.46 0.78 16 17 N -0.93 -56.06 13.29 21.45 0.28 -55.78 16 18 Si 0.98 43.94 29.54 68.60 2.03 45.96 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 22 C 0.04 0.87 6.10 86.65 0.53 1.40 16 23 H 0.07 0.85 8.13 -2.38 -0.02 0.83 16 24 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 25 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 2.36 8.04 -2.39 -0.02 2.34 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.05 1.70 7.21 -2.39 -0.02 1.68 16 29 H 0.08 2.96 7.60 -2.38 -0.02 2.94 16 30 H 0.12 2.55 8.03 -2.39 -0.02 2.53 16 31 H 0.04 1.27 7.85 -2.39 -0.02 1.25 16 32 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H -0.02 -1.02 8.14 -2.39 -0.02 -1.03 16 35 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.12 2.75 6.81 -2.39 -0.02 2.73 16 38 H 0.09 1.92 7.52 -2.39 -0.02 1.90 16 Total: -1.00 -68.12 322.51 3.05 -65.07 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.05 Total: 6.87 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.85 Total: 2.22 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -4.29 Total: -75.77 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.35 Total: -40.25 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.76 Total: -4.10 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.12 3.05 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815055863.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.623 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds