Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86806 * 120.00038 * 2 1 4 4 H 1.48496 * 109.47082 * 275.20712 * 3 2 1 5 5 H 1.48502 * 109.47287 * 35.21007 * 3 2 1 6 6 H 1.48504 * 109.46767 * 155.20556 * 3 2 1 7 7 C 1.40029 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 343.02861 * 7 2 1 9 9 C 1.41550 * 119.99998 * 163.02291 * 7 2 1 10 10 C 1.41170 * 120.99683 * 154.01089 * 9 7 2 11 11 C 1.37586 * 119.01672 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.10984 * 0.02844 * 11 10 9 13 13 C 1.32472 * 122.22734 * 359.65294 * 12 11 10 14 14 N 1.39475 * 119.57569 * 180.34250 * 13 12 11 15 15 C 1.34776 * 120.00058 * 3.23706 * 14 13 12 16 16 O 1.21276 * 120.00024 * 4.86133 * 15 14 13 17 17 C 1.50700 * 119.99659 * 184.87146 * 15 14 13 18 18 N 1.46896 * 109.46782 * 179.97438 * 17 15 14 19 19 C 1.48533 * 111.00315 * 52.60223 * 18 17 15 20 20 C 1.54937 * 103.22961 * 159.71741 * 19 18 17 21 21 C 1.54590 * 102.92217 * 322.58850 * 20 19 18 22 22 C 1.47910 * 110.99949 * 169.99845 * 18 17 15 23 23 C 1.38589 * 120.84246 * 0.63717 * 13 12 11 24 24 H 0.97004 * 119.99754 * 359.97438 * 1 2 3 25 25 H 1.08007 * 120.49137 * 0.04775 * 10 9 7 26 26 H 1.07999 * 119.44565 * 180.02562 * 11 10 9 27 27 H 0.96997 * 119.99631 * 183.23430 * 14 13 12 28 28 H 1.08999 * 109.46684 * 299.99462 * 17 15 14 29 29 H 1.08998 * 109.47512 * 59.99493 * 17 15 14 30 30 H 1.08999 * 110.66475 * 278.15588 * 19 18 17 31 31 H 1.08996 * 110.66675 * 41.28673 * 19 18 17 32 32 H 1.09001 * 110.72400 * 204.22432 * 20 19 18 33 33 H 1.09006 * 110.72237 * 80.94492 * 20 19 18 34 34 H 1.09004 * 110.31008 * 263.03844 * 21 20 19 35 35 H 1.09001 * 110.31127 * 140.87406 * 21 20 19 36 36 H 1.08999 * 109.91148 * 333.50368 * 22 18 17 37 37 H 1.08992 * 109.91576 * 94.60341 * 22 18 17 38 38 H 1.07995 * 120.60528 * 179.68604 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3789 2.1100 -1.3943 5 1 1.4983 2.6185 0.8073 6 1 3.5896 1.4109 0.5872 7 6 2.0075 -1.2127 0.0005 8 1 1.5028 -2.1275 0.2740 9 6 3.3767 -1.2396 -0.3574 10 6 4.2346 -2.2515 0.1252 11 6 5.5588 -2.2381 -0.2483 12 7 6.0335 -1.2980 -1.0454 13 6 5.2694 -0.3305 -1.5300 14 7 5.8272 0.6303 -2.3732 15 6 7.1198 0.5339 -2.7425 16 8 7.7737 -0.4334 -2.4146 17 6 7.7526 1.6283 -3.5629 18 7 9.1563 1.2892 -3.8319 19 6 9.2723 -0.0691 -4.4217 20 6 10.6632 -0.0420 -5.1037 21 6 10.7452 1.3962 -5.6647 22 6 9.7433 2.2125 -4.8272 23 6 3.9241 -0.2573 -1.2049 24 1 -0.4850 0.8401 0.0004 25 1 3.8570 -3.0250 0.7776 26 1 6.2211 -3.0092 0.1165 27 1 5.2849 1.3678 -2.6938 28 1 7.2162 1.7317 -4.5061 29 1 7.7052 2.5683 -3.0131 30 1 9.2405 -0.8307 -3.6427 31 1 8.4862 -0.2371 -5.1579 32 1 10.7119 -0.7739 -5.9099 33 1 11.4540 -0.2170 -4.3740 34 1 10.4582 1.4091 -6.7162 35 1 11.7529 1.7933 -5.5419 36 1 8.9595 2.6114 -5.4711 37 1 10.2574 3.0282 -4.3191 38 1 3.3059 0.5361 -1.5981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820991783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = 16.270576 kcal Electronic energy + Delta-G solvation = -20863.035641 eV Core-core repulsion = 17705.727074 eV Total energy + Delta-G solvation = -3157.308567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10910 -38.81412 -37.55944 -34.42792 -33.82329 -32.36664 -31.32544 -29.17480 -28.87158 -26.52561 -25.92777 -22.42655 -22.01836 -21.04875 -20.83979 -19.78952 -17.77490 -17.22737 -16.27555 -16.00892 -15.66411 -15.30838 -15.17089 -14.57262 -14.14446 -13.95681 -13.62585 -13.31969 -13.00999 -12.96361 -12.70605 -12.31257 -12.23382 -11.67408 -11.58738 -11.39581 -11.06509 -10.97740 -10.82288 -10.71775 -10.68837 -9.99909 -9.88130 -9.48221 -9.29485 -8.47863 -8.26691 -7.86675 -7.26379 -7.11484 -4.77049 2.27360 2.60672 2.95510 3.05226 3.20023 3.25378 3.32495 3.84363 4.01323 4.53400 4.56472 4.60624 4.82425 4.92154 5.15842 5.21813 5.30432 5.41017 5.43172 5.57868 5.66563 5.74357 5.75406 5.91159 6.08471 6.23176 6.28186 6.37513 6.41569 6.55396 6.81614 6.85121 6.92302 7.11479 7.24074 7.55585 7.71668 8.01080 8.17308 8.40072 8.61617 8.68352 9.44271 9.89499 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.004296 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.995972 B = 6515.644560 C = 7197.457129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.085 3.915 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.434 4.434 8 H 0.095 0.905 9 C 0.127 3.873 10 C -0.274 4.274 11 C 0.129 3.871 12 N -0.556 5.556 13 C 0.371 3.629 14 N -0.665 5.665 15 C 0.499 3.501 16 O -0.460 6.460 17 C 0.027 3.973 18 N -0.500 5.500 19 C 0.030 3.970 20 C -0.126 4.126 21 C -0.131 4.131 22 C 0.034 3.966 23 C -0.324 4.324 24 H 0.288 0.712 25 H 0.109 0.891 26 H 0.130 0.870 27 H 0.407 0.593 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 6.528 -9.283 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.167 1.167 7 C -0.464 4.464 8 H 0.113 0.887 9 C 0.119 3.881 10 C -0.298 4.298 11 C -0.023 4.023 12 N -0.276 5.276 13 C 0.144 3.856 14 N -0.312 5.312 15 C 0.283 3.717 16 O -0.328 6.328 17 C -0.105 4.105 18 N -0.225 5.225 19 C -0.097 4.097 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.094 4.094 23 C -0.349 4.349 24 H 0.099 0.901 25 H 0.128 0.872 26 H 0.147 0.853 27 H 0.241 0.759 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.020 5.939 -8.774 17.573 hybrid contribution -1.713 1.293 -0.751 2.274 sum 12.307 7.232 -9.525 17.161 Atomic orbital electron populations 1.69641 1.08176 1.30634 1.33649 1.26232 0.94781 1.02037 0.90570 0.86210 0.81324 0.79317 0.78564 1.19798 1.21856 1.16659 1.19537 0.92290 0.96186 1.38417 0.88672 1.17667 0.93034 0.89686 0.87746 1.21869 0.94561 1.04670 1.08653 1.21889 0.93165 0.94482 0.92727 1.67309 1.37321 1.05586 1.17391 1.17976 0.88489 0.88891 0.90236 1.43525 1.11786 1.27477 1.48369 1.20479 0.81748 0.88043 0.81437 1.90715 1.60331 1.31018 1.50747 1.22254 0.90063 0.98615 0.99560 1.64674 1.13999 1.03087 1.40755 1.23557 0.95375 0.92370 0.98424 1.22527 0.98112 0.95946 0.99790 1.22391 0.99584 0.96015 0.98902 1.22933 0.97253 0.96238 0.92979 1.21146 0.93920 1.07680 1.12166 0.90124 0.87248 0.85284 0.75888 0.92026 0.87840 0.86633 0.94524 0.91266 0.90709 0.91697 0.91090 0.93869 0.90263 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.33 13.92 55.55 0.77 -19.56 16 2 C 0.08 2.14 5.45 -17.35 -0.09 2.04 16 3 Si 0.92 19.91 24.42 -169.99 -4.15 15.75 16 4 H -0.27 -5.49 6.70 56.52 0.38 -5.11 16 5 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.24 -5.54 6.66 56.52 0.38 -5.16 16 7 C -0.43 -11.38 9.66 -37.65 -0.36 -11.75 16 8 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.13 3.19 5.23 -106.55 -0.56 2.63 16 10 C -0.27 -6.39 9.90 -38.71 -0.38 -6.77 16 11 C 0.13 2.92 11.15 -17.68 -0.20 2.73 16 12 N -0.56 -13.40 7.87 -12.52 -0.10 -13.50 16 13 C 0.37 8.48 7.41 -154.70 -1.15 7.33 16 14 N -0.66 -12.17 5.39 -11.49 -0.06 -12.24 16 15 C 0.50 8.79 7.49 -10.99 -0.08 8.70 16 16 O -0.46 -9.76 11.79 5.56 0.07 -9.70 16 17 C 0.03 0.34 5.52 -4.98 -0.03 0.32 16 18 N -0.50 -6.64 5.26 -231.90 -1.22 -7.86 16 19 C 0.03 0.40 5.30 -1.90 -0.01 0.39 16 20 C -0.13 -1.33 7.06 -24.87 -0.18 -1.50 16 21 C -0.13 -1.17 6.93 -25.38 -0.18 -1.34 16 22 C 0.03 0.34 6.70 -2.75 -0.02 0.32 16 23 C -0.32 -7.67 7.01 -38.48 -0.27 -7.94 16 24 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 25 H 0.11 2.35 8.06 -52.48 -0.42 1.92 16 26 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 27 H 0.41 5.95 8.69 -40.82 -0.35 5.60 16 28 H 0.06 0.66 7.81 -51.93 -0.41 0.25 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.12 1.94 5.97 -51.93 -0.31 1.63 16 31 H 0.04 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.39 7.57 -51.93 -0.39 -0.01 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 2.39 4.23 -52.49 -0.22 2.17 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -30.61 307.53 -8.65 -39.26 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.09 Total: 8.04 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -3.50 Total: -4.84 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.61 Total: -53.15 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.15 Total: 15.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.61 -8.65 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820991783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.533 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds